Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011927

Physical Location & Seq

Genomic Coordinates Forward (+)

1014632 .. 1016726

Gene Structure 2095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g01061.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAATGGCCATACCGCCAGCAGTAGAGAGCTTTTGGGTATGAATATCCATCCAACTATGGCAAGACTCACAAGTGAGGCTATAAATGCCACTTGCTTTGATATTTATTATGCTCCAATTCCAGTCATGTCTACTTCATCTTGTTCAAACGTTTTTGAGCTTGGAAAGTACAGGGTAGAGTTCCAAACAGTTGATGCAGCAGAGACTAGTAGTGGATGCTGCAGCACCAAGTCTTCTTCAACTGTTTCGCTTCGGCCTCCGAAGCAGCTTTTGATTGGCTTGCCTTGCGAAGCTGGAGAGTTCCCAGTGCTGCTCCTCCTCCATGGTTTTCTTCTCTCCAACTCTTTCTACTCTCAGCTTATCCAACACATCGCCTCTCATGGCTTCATCGTCATTTCCCCTCAGTTGTATACAATAGCTGGATCAGATACAAGTGATGAGATCAAGTCCACAGCTGCAATAACAAACTGGTTATCAGAAGGACTTCAATCCTTGCTTCCACCGCATGTTCATGCAAATCTAAACAAGCTAGCACTCGCCGGGCATAGTCGAGGAGGCAAAGTTTCTTTTGCACTAGCATTAGGGAAAGAAGGCATCACTACTAGCTTGAAATTTTCAGCCTTAATAGGCATAGACCCAGTTGATGGAATGGACAAGGGAAAACAGACCCCTCCACCAGTACTAACCTATGTCCCTCATTCTTTCGATCTTGAAGGCATGGCAGTAATGGTGATTGGTACTGGTTTGGGTGAAGTGAAGAGAAACCCTCTATTCCCTGCTTGTGCTCCAAAGGGTGTAAACCATGAGGACTTCTTCAATGAATGCCGAAAACCGGCTTGTTACTTTGTGGCCAAGGACTACGGGCATCTTGATATGCTTGATGATGAGACAAAGGGGGTTAGAGGGAAGGCTACATATTGTTTGTGCAAAAATGGCAAGTCTAGGGAACCCATGAGAAAATTTGTTGGAGGAGTTGTGGTTGCTTTCATTAAAGCCTATTTGGGAGGGGATAGCAATGAACTAATGGCTATAAGTGAAGCAGGGTATGATGCTGCACCAATTGAGCTTCAAAGTGTTGAATTCCTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0051186 GO:0051187 GO:0052689 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

364

Amino Acids

39.03

Weight (kDa)

6.12

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	48 - 361	2.8e-134	Chlorophyllase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43860
fragaria_vesca	FvH4_4g00030 FvH4_4g01061 FvH4_4g01061
malus_domestica	MD13G1198800.v1.1 MD16G1199000.v1.1
prunus_persica	Prupe.1G020600_v2.0.a1
pyrus_communis	pycom13g17260 pycom16g16760
rosa_laevigata	RLG00000010105
rosa_multiflora	Rmu_sc0003953.1_g000005 Rmu_sc0012183.1_g000004
rosa_roxburghii	Rroxscaffold_5G00334310
rosa_rugosa	Rorug03G0311700
rosa_samantha	Rh4AG017300 Rh4BG012100 Rh4CG018500 Rh4DG013100
rosa_wichuraiana	Rw4G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	644
AccI	GTMKAC	2 cut(s)	131, 410
AciI	CCGC	2 cut(s)	15, 503
AclI	AACGTT	1 cut(s)	150
AclWI	GGATC	1 cut(s)	430
AcoI	YGGCCR	2 cut(s)	7, 849
AcsI	RAATTY	3 cut(s)	611, 959, 1079
AfaI	GTAC	3 cut(s)	170, 681, 739
AfiI	CCNNNNNNNGG	2 cut(s)	644, 832
AgsI	TTSAA	8 cut(s)	147, 240, 488, 610, 713, 817, 1070, 1079
AhlI	ACTAGT	1 cut(s)	206
Alw21I	GWGCWC	1 cut(s)	787
Alw26I	GTCTC	2 cut(s)	197, 881
AlwI	GGATC	1 cut(s)	430
AoxI	GGCC	3 cut(s)	7, 254, 849
ApeKI	GCWGC	7 cut(s)	197, 219, 222, 265, 310, 455, 1052
ApoI	RAATTY	3 cut(s)	611, 959, 1079
Asp700I	GAANNNNTTC	1 cut(s)	483
AsuC2I	CCSGG	1 cut(s)	541
AsuHPI	GGTGA	2 cut(s)	742, 761
AsuNHI	GCTAGC	1 cut(s)	529
BalI	TGGCCA	2 cut(s)	9, 851
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	787
BbvI	GCAGC	7 cut(s)	206, 209, 234, 277, 297, 442, 1039
BccI	CCATC	2 cut(s)	57, 638
BcnI	CCSGG	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	197, 881
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	5 cut(s)	207, 530, 575, 603, 942
BfmI	CTRYAG	1 cut(s)	220
BisI	GCNGC	7 cut(s)	198, 220, 223, 266, 311, 456, 1053
BlsI	GCNGC	7 cut(s)	199, 221, 224, 267, 312, 457, 1054
BmcAI	AGTACT	1 cut(s)	681
Bme1390I	CCNGG	1 cut(s)	541
BmiI	GGNNCC	1 cut(s)	948
BmrFI	CCNGG	1 cut(s)	541
BmrI	ACTGGG	2 cut(s)	299, 632
BmsI	GCATC	5 cut(s)	184, 206, 603, 874, 1039
BmtI	GCTAGC	1 cut(s)	533
BmuI	ACTGGG	2 cut(s)	299, 632
BpiI	GAAGAC	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	751, 783
BpmI	CTGGAG	1 cut(s)	315
BpuMI	CCSGG	1 cut(s)	541
BsaJI	CCNNGG	2 cut(s)	322, 852
BsaXI	ACNNNNNCTCC	6 cut(s)	546, 576, 960, 963, 990, 993
Bsc4I	CCNNNNNNNGG	2 cut(s)	644, 832
Bse118I	RCCGGY	1 cut(s)	832
Bse1I	ACTGG	6 cut(s)	122, 305, 473, 638, 677, 745
Bse3DI	GCAATG	1 cut(s)	1021
BseDI	CCNNGG	2 cut(s)	322, 852
BseGI	GGATG	2 cut(s)	49, 221
BseLI	CCNNNNNNNGG	2 cut(s)	644, 832
BseMI	GCAATG	1 cut(s)	1021
BseMII	CTCAG	2 cut(s)	368, 416
BseNI	ACTGG	6 cut(s)	122, 305, 473, 638, 677, 745
BseRI	GAGGAG	4 cut(s)	305, 308, 567, 984
BseXI	GCAGC	7 cut(s)	206, 209, 234, 277, 297, 442, 1039
BsgI	GTGCAG	1 cut(s)	1038
BshFI	GGCC	3 cut(s)	9, 256, 851
BsiHKAI	GWGCWC	1 cut(s)	787
BsiSI	CCGG	2 cut(s)	540, 833
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	2 cut(s)	644, 832
BsmAI	GTCTC	2 cut(s)	197, 881
BsmFI	GGGAC	1 cut(s)	677
BsmI	GAATGC	1 cut(s)	827
BsnI	GGCC	3 cut(s)	9, 256, 851
Bsp1286I	GDGCHC	1 cut(s)	787
Bsp143I	GATC	3 cut(s)	422, 441, 706
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	2 cut(s)	15, 503
BspANI	GGCC	3 cut(s)	9, 256, 851
BspCNI	CTCAG	2 cut(s)	367, 415
BspLI	GGNNCC	1 cut(s)	948
BspMAI	CTGCAG	1 cut(s)	224
BspOI	GCTAGC	1 cut(s)	533
BspPI	GGATC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	1021
BsrFI	RCCGGY	1 cut(s)	832
BsrI	ACTGG	6 cut(s)	122, 305, 473, 638, 677, 745
BssAI	RCCGGY	1 cut(s)	832
BssECI	CCNNGG	2 cut(s)	322, 852
BssMI	GATC	3 cut(s)	422, 441, 706
BssNAI	GTATAC	1 cut(s)	411
BssT1I	CCWWGG	2 cut(s)	322, 852
Bst1107I	GTATAC	1 cut(s)	411
Bst4CI	ACNGT	2 cut(s)	190, 244
Bst6I	CTCTTC	1 cut(s)	752
BstC8I	GCNNGC	3 cut(s)	19, 281, 531
BstDEI	CTNAG	2 cut(s)	354, 402
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	2 cut(s)	49, 221
BstKTI	GATC	3 cut(s)	425, 444, 709
BstMAI	GTCTC	2 cut(s)	197, 881
BstMBI	GATC	3 cut(s)	422, 441, 706
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 262, 285, 502, 933
BstNSI	RCATGY	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	539
BstSFI	CTRYAG	1 cut(s)	220
BstV1I	GCAGC	7 cut(s)	206, 209, 234, 277, 297, 442, 1039
BstV2I	GAAGAC	1 cut(s)	225
BstZ17I	GTATAC	1 cut(s)	411
BsuRI	GGCC	3 cut(s)	9, 256, 851
BtgI	CCRYGG	1 cut(s)	322
BtgZI	GCGATG	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	49, 221
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	19, 281, 531
Cfr10I	RCCGGY	1 cut(s)	832
Csp6I	GTAC	3 cut(s)	169, 680, 738
CspCI	CAANNNNNGTGG	2 cut(s)	79, 114
CviAII	CATG	8 cut(s)	127, 323, 380, 506, 512, 718, 803, 952
CviQI	GTAC	3 cut(s)	169, 680, 738
DdeI	CTNAG	2 cut(s)	354, 402
DpnI	GATC	3 cut(s)	424, 443, 708
DpnII	GATC	3 cut(s)	422, 441, 706
EaeI	YGGCCR	2 cut(s)	7, 849
Eam1104I	CTCTTC	1 cut(s)	752
EarI	CTCTTC	1 cut(s)	752
Eco130I	CCWWGG	2 cut(s)	322, 852
EcoRI	GAATTC	1 cut(s)	1079
EcoT14I	CCWWGG	2 cut(s)	322, 852
ErhI	CCWWGG	2 cut(s)	322, 852
FaeI	CATG	8 cut(s)	130, 326, 383, 509, 515, 721, 806, 955
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	8 cut(s)	126, 322, 379, 505, 511, 717, 802, 951
FblI	GTMKAC	2 cut(s)	131, 410
Fnu4HI	GCNGC	7 cut(s)	198, 220, 223, 266, 311, 456, 1053
FokI	GGATG	2 cut(s)	36, 228
Fsp4HI	GCNGC	7 cut(s)	198, 220, 223, 266, 311, 456, 1053
FspBI	CTAG	5 cut(s)	207, 530, 575, 603, 942
GluI	GCNGC	7 cut(s)	198, 220, 223, 266, 311, 456, 1053
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	3 cut(s)	9, 256, 851
HapII	CCGG	2 cut(s)	540, 833
Hin1II	CATG	8 cut(s)	130, 326, 383, 509, 515, 721, 806, 955
HinfI	GANTC	1 cut(s)	66
HpaII	CCGG	2 cut(s)	540, 833
HphI	GGTGA	2 cut(s)	742, 761
Hpy166II	GTNNAC	4 cut(s)	132, 411, 450, 799
Hpy188I	TCNGA	3 cut(s)	261, 427, 478
Hpy188III	TCNNGA	2 cut(s)	710, 869
Hpy8I	GTNNAC	4 cut(s)	132, 411, 450, 799
HpyAV	CCTTC	4 cut(s)	473, 584, 707, 901
HpyCH4III	ACNGT	2 cut(s)	190, 244
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	7 cut(s)	197, 222, 458, 515, 572, 927, 1055
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 262, 285, 502, 933
HpyF3I	CTNAG	2 cut(s)	354, 402
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	8 cut(s)	130, 326, 383, 509, 515, 721, 806, 955
Kzo9I	GATC	3 cut(s)	422, 441, 706
LmnI	GCTCC	3 cut(s)	118, 318, 790
Lsp1109I	GCAGC	7 cut(s)	206, 209, 234, 277, 297, 442, 1039
LweI	GCATC	5 cut(s)	184, 206, 603, 874, 1039
MaeI	CTAG	5 cut(s)	207, 530, 575, 603, 942
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	839
MalI	GATC	3 cut(s)	424, 443, 708
MboI	GATC	3 cut(s)	422, 441, 706
MboII	GAAGA	5 cut(s)	225, 228, 323, 769, 805
MfeI	CAATTG	1 cut(s)	1059
MhlI	GDGCHC	1 cut(s)	787
MlsI	TGGCCA	2 cut(s)	9, 851
MluCI	AATT	5 cut(s)	117, 611, 959, 1059, 1079
MluNI	TGGCCA	2 cut(s)	9, 851
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	4 cut(s)	77, 363, 388, 946
Mox20I	TGGCCA	2 cut(s)	9, 851
MroXI	GAANNNNTTC	1 cut(s)	483
MscI	TGGCCA	2 cut(s)	9, 851
MseI	TTAA	2 cut(s)	623, 990
MslI	CAYNNNNRTG	1 cut(s)	510
Msp20I	TGGCCA	2 cut(s)	9, 851
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	2 cut(s)	540, 833
MspR9I	CCNGG	1 cut(s)	541
MunI	CAATTG	1 cut(s)	1059
Mva1269I	GAATGC	1 cut(s)	827
MwoI	GCNNNNNNNGC	5 cut(s)	86, 262, 285, 502, 933
NciI	CCSGG	1 cut(s)	541
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	3 cut(s)	422, 441, 706
NheI	GCTAGC	1 cut(s)	529
NlaIII	CATG	8 cut(s)	130, 326, 383, 509, 515, 721, 806, 955
NlaIV	GGNNCC	1 cut(s)	948
NspI	RCATGY	1 cut(s)	509
PctI	GAATGC	1 cut(s)	827
PdmI	GAANNNNTTC	1 cut(s)	483
PflMI	CCANNNNNTGG	1 cut(s)	644
PkrI	GCNGC	7 cut(s)	199, 221, 224, 267, 312, 457, 1054
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
Psp1406I	AACGTT	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	948
PstI	CTGCAG	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	3 cut(s)	170, 681, 739
RsaNI	GTAC	3 cut(s)	169, 680, 738
RseI	CAYNNNNRTG	1 cut(s)	510
SaqAI	TTAA	2 cut(s)	623, 990
SatI	GCNGC	7 cut(s)	198, 220, 223, 266, 311, 456, 1053
Sau3AI	GATC	3 cut(s)	422, 441, 706
ScaI	AGTACT	1 cut(s)	681
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	541
SduI	GDGCHC	1 cut(s)	787
SfaNI	GCATC	5 cut(s)	184, 206, 603, 874, 1039
SfcI	CTRYAG	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	510
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	5 cut(s)	117, 611, 959, 1059, 1079
SsiI	CCGC	2 cut(s)	15, 503
SspMI	CTAG	5 cut(s)	207, 530, 575, 603, 942
StyD4I	CCNGG	1 cut(s)	539
StyI	CCWWGG	2 cut(s)	322, 852
TaaI	ACNGT	2 cut(s)	190, 244
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	550, 705
TasI	AATT	5 cut(s)	117, 611, 959, 1059, 1079
TatI	WGTACW	2 cut(s)	168, 679
Tru1I	TTAA	2 cut(s)	623, 990
Tru9I	TTAA	2 cut(s)	623, 990
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	7 cut(s)	197, 219, 222, 265, 310, 455, 1052
TspDTI	ATGAA	8 cut(s)	17, 56, 126, 376, 500, 834, 976, 1032
TspRI	CASTG	1 cut(s)	312
Van91I	CCANNNNNTGG	1 cut(s)	644
XapI	RAATTY	3 cut(s)	611, 959, 1079
XceI	RCATGY	1 cut(s)	509
XmiI	GTMKAC	2 cut(s)	131, 410
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	5 cut(s)	207, 530, 575, 603, 942
ZrmI	AGTACT	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.