Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011927

Physical Location & Seq

Genomic Coordinates Forward (+)

1449523 .. 1451692

Gene Structure 2170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G020600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCTCATGACAGTCATGTCCTCCTCCACTTCCTCTTCTTCAGTTGCTAGCACTGCTGCTACAAATGTCGTTTTTGAGATTGGAAAATACAAGGTGGTGCTCCAAAGAGCTGAACCAGAGACTACATGCAGCACCAAGTCCTCAAATATTCCAGTTCCACCTCCAAAGCCTCTTCTGATTGGCATGCCTTGTGAAGCTGGAGAATTCCCTCTCTTGCTGCTCCTCCATGGTTATCTTCTCTCCAACTCTTTCTACTCTCAGCTTATCCAACACATCGCTTCTCACGGCTTCATTGTCGTTGCCCCTCAGTTATATACAATAGCTGGACCAGATACAACAGGTGAGATCAAGTCTACAGCGGCAATAACAAATTGGTTATCTGAAGGACTTCAGTTCTTGCTTCCACCCCATGTTCAGGCAAATCTAAGCAAGCTAGCACTTGCCGGCCACAGCCGTGGAGGCAAAGTCTCTTTTGCACTAGCATTAGGGAAAGAAGGAAACACTAATCGAAAGTTTTCAGCCTTAATAGGCATTGACCCAGTTGATGGAATGGACAAAGGGAAACAAACCCCTCCACCAGTACTAACCTATGTTCCTCATTCATTTGATCTTGATATGGCAGTGATGGTGATTGGTTCTGGTTTGGGTGAGGTGAAAAGGAACCCTCTGTTCCCTCCTTGTGCTCCAAAAGGTGTTAACCATGAGGACTTCTTCAACGAATGCCAAAAACCAGCATGTTATTTTGTGGCAAAGGATTATGGTCATCTTGATATGCTGGATGATGAAACCAAGGGGATCAGAGGGAAATCTACATACTGTCTGTGCAAAAATGGGAAGTCAAGGGAACCCATGAGGAAGTTTGTTGGAGGGGTTGTGGTTGCATTCCTTCAAGCTTATTTGGAAGGTGATAATAGCCACTTAATGGCTATAAGAGATGGGCTTGATGAGACTGTGCCAGTAGAGCTTCAAATTGTTAAATTTAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0051186 GO:0051187 GO:0052689 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

330

Amino Acids

35.53

Weight (kDa)

6.75

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43860
fragaria_vesca	FvH4_4g00030 FvH4_4g01061 FvH4_4g01061
malus_domestica	MD13G1198800.v1.1 MD16G1199000.v1.1
prunus_persica	Prupe.1G020600_v2.0.a1
pyrus_communis	pycom13g17260 pycom16g16760
rosa_laevigata	RLG00000010105
rosa_multiflora	Rmu_sc0003953.1_g000005 Rmu_sc0012183.1_g000004
rosa_roxburghii	Rroxscaffold_5G00334310
rosa_rugosa	Rorug03G0311700
rosa_samantha	Rh4AG017300 Rh4BG012100 Rh4CG018500 Rh4DG013100
rosa_wichuraiana	Rw4G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AccB7I	CCANNNNNTGG	2 cut(s)	545, 922
AccI	GTMKAC	1 cut(s)	353
AciI	CCGC	1 cut(s)	359
AclWI	GGATC	1 cut(s)	803
AcoI	YGGCCR	1 cut(s)	445
AcsI	RAATTY	2 cut(s)	203, 977
AcuI	CTGAAG	3 cut(s)	24, 374, 402
AfaI	GTAC	1 cut(s)	582
AfiI	CCNNNNNNNGG	3 cut(s)	415, 545, 922
AgsI	TTSAA	3 cut(s)	715, 890, 968
AleI	CACNNNNGTG	1 cut(s)	453
AluBI	AGCT	7 cut(s)	110, 197, 262, 323, 433, 893, 964
AluI	AGCT	7 cut(s)	110, 197, 262, 323, 433, 893, 964
Alw21I	GWGCWC	2 cut(s)	102, 685
Alw26I	GTCTC	3 cut(s)	113, 472, 941
AlwI	GGATC	1 cut(s)	803
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	3 cut(s)	56, 129, 217
ApoI	RAATTY	2 cut(s)	203, 977
Asp700I	GAANNNNTTC	2 cut(s)	387, 514
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	5 cut(s)	353, 640, 659, 664, 917
AsuNHI	GCTAGC	2 cut(s)	47, 433
AvaII	GGWCC	1 cut(s)	326
Bbv12I	GWGCWC	2 cut(s)	102, 685
BbvI	GCAGC	3 cut(s)	43, 141, 204
BccI	CCATC	3 cut(s)	539, 619, 929
BceAI	ACGGC	2 cut(s)	301, 438
BcoDI	GTCTC	3 cut(s)	113, 472, 941
BfaI	CTAG	3 cut(s)	48, 434, 479
BfmI	CTRYAG	1 cut(s)	354
BglI	GCCNNNNNGGC	1 cut(s)	459
BisI	GCNGC	4 cut(s)	57, 130, 218, 360
BlsI	GCNGC	4 cut(s)	58, 131, 219, 361
BmcAI	AGTACT	1 cut(s)	582
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	2 cut(s)	662, 846
BmrI	ACTGGG	1 cut(s)	533
BmtI	GCTAGC	2 cut(s)	51, 437
BmuI	ACTGGG	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	226, 454, 789
BsaXI	ACNNNNNCTCC	4 cut(s)	450, 480, 858, 888
Bsc4I	CCNNNNNNNGG	3 cut(s)	415, 545, 922
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	4 cut(s)	152, 539, 578, 956
BseDI	CCNNGG	3 cut(s)	226, 454, 789
BseGI	GGATG	1 cut(s)	784
BseLI	CCNNNNNNNGG	3 cut(s)	415, 545, 922
BseMII	CTCAG	2 cut(s)	272, 320
BseNI	ACTGG	4 cut(s)	152, 539, 578, 956
BseRI	GAGGAG	2 cut(s)	13, 212
BseXI	GCAGC	3 cut(s)	43, 141, 204
BshFI	GGCC	1 cut(s)	447
BsiHKAI	GWGCWC	2 cut(s)	102, 685
BsiSI	CCGG	1 cut(s)	444
BslI	CCNNNNNNNGG	3 cut(s)	415, 545, 922
BsmAI	GTCTC	3 cut(s)	113, 472, 941
BsmI	GAATGC	2 cut(s)	725, 881
BsnI	GGCC	1 cut(s)	447
Bsp1286I	GDGCHC	2 cut(s)	102, 685
Bsp143I	GATC	3 cut(s)	345, 607, 795
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	2 cut(s)	271, 319
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	662, 846
BspOI	GCTAGC	2 cut(s)	51, 437
BspPI	GGATC	1 cut(s)	803
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	4 cut(s)	152, 539, 578, 956
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	3 cut(s)	226, 454, 789
BssMI	GATC	3 cut(s)	345, 607, 795
BssT1I	CCWWGG	2 cut(s)	226, 789
Bst4CI	ACNGT	3 cut(s)	13, 818, 952
Bst6I	CTCTTC	2 cut(s)	40, 177
BstC8I	GCNNGC	5 cut(s)	49, 185, 431, 435, 445
BstDEI	CTNAG	3 cut(s)	258, 306, 425
BstDSI	CCRYGG	2 cut(s)	226, 454
BstF5I	GGATG	1 cut(s)	784
BstKTI	GATC	3 cut(s)	348, 610, 798
BstMAI	GTCTC	3 cut(s)	113, 472, 941
BstMBI	GATC	3 cut(s)	345, 607, 795
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 459, 961
BstNSI	RCATGY	3 cut(s)	129, 187, 738
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	3 cut(s)	43, 141, 204
BstXI	CCANNNNNNTGG	1 cut(s)	455
BsuRI	GGCC	1 cut(s)	447
BtgI	CCRYGG	2 cut(s)	226, 454
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	784
BtsI	GCAGTG	2 cut(s)	51, 627
BtsIMutI	CAGTG	2 cut(s)	51, 627
Cac8I	GCNNGC	5 cut(s)	49, 185, 431, 435, 445
CciI	TCATGA	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	581
CviAII	CATG	9 cut(s)	7, 16, 126, 184, 227, 410, 701, 735, 850
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	3 cut(s)	258, 306, 425
DpnI	GATC	3 cut(s)	347, 609, 797
DpnII	GATC	3 cut(s)	345, 607, 795
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	445
Eam1104I	CTCTTC	2 cut(s)	40, 177
EarI	CTCTTC	2 cut(s)	40, 177
Eco130I	CCWWGG	2 cut(s)	226, 789
Eco47I	GGWCC	1 cut(s)	326
Eco57I	CTGAAG	3 cut(s)	24, 374, 402
EcoRI	GAATTC	1 cut(s)	203
EcoT14I	CCWWGG	2 cut(s)	226, 789
ErhI	CCWWGG	2 cut(s)	226, 789
FaeI	CATG	9 cut(s)	10, 19, 129, 187, 230, 413, 704, 738, 853
FatI	CATG	9 cut(s)	6, 15, 125, 183, 226, 409, 700, 734, 849
FblI	GTMKAC	1 cut(s)	353
Fnu4HI	GCNGC	4 cut(s)	57, 130, 218, 360
FokI	GGATG	1 cut(s)	791
Fsp4HI	GCNGC	4 cut(s)	57, 130, 218, 360
FspBI	CTAG	3 cut(s)	48, 434, 479
GluI	GCNGC	4 cut(s)	57, 130, 218, 360
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	1 cut(s)	444
Hin1II	CATG	9 cut(s)	10, 19, 129, 187, 230, 413, 704, 738, 853
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HindIII	AAGCTT	1 cut(s)	891
HpaI	GTTAAC	1 cut(s)	697
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	5 cut(s)	353, 640, 659, 664, 917
Hpy166II	GTNNAC	2 cut(s)	354, 697
Hpy188I	TCNGA	3 cut(s)	177, 382, 800
Hpy188III	TCNNGA	3 cut(s)	7, 611, 767
Hpy8I	GTNNAC	2 cut(s)	354, 697
HpyAV	CCTTC	4 cut(s)	377, 488, 896, 896
HpyCH4III	ACNGT	3 cut(s)	13, 818, 952
HpyCH4V	TGCA	4 cut(s)	129, 476, 825, 881
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 459, 961
HpyF3I	CTNAG	3 cut(s)	258, 306, 425
Hsp92II	CATG	9 cut(s)	10, 19, 129, 187, 230, 413, 704, 738, 853
KroI	GCCGGC	1 cut(s)	443
KroNI	GCCGGC	1 cut(s)	445
KspAI	GTTAAC	1 cut(s)	697
Kzo9I	GATC	3 cut(s)	345, 607, 795
LmnI	GCTCC	3 cut(s)	105, 225, 688
Lsp1109I	GCAGC	3 cut(s)	43, 141, 204
MaeI	CTAG	3 cut(s)	48, 434, 479
MalI	GATC	3 cut(s)	347, 609, 797
MboI	GATC	3 cut(s)	345, 607, 795
MboII	GAAGA	5 cut(s)	27, 30, 164, 227, 703
MhlI	GDGCHC	2 cut(s)	102, 685
MluCI	AATT	5 cut(s)	203, 370, 969, 977, 982
MmeI	TCCRAC	3 cut(s)	267, 292, 844
MroNI	GCCGGC	1 cut(s)	443
MroXI	GAANNNNTTC	2 cut(s)	387, 514
MseI	TTAA	5 cut(s)	524, 696, 920, 975, 981
MslI	CAYNNNNRTG	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	1 cut(s)	444
Mva1269I	GAATGC	2 cut(s)	725, 881
MwoI	GCNNNNNNNGC	3 cut(s)	53, 459, 961
NaeI	GCCGGC	1 cut(s)	445
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	3 cut(s)	345, 607, 795
NgoMIV	GCCGGC	1 cut(s)	443
NheI	GCTAGC	2 cut(s)	47, 433
NlaIII	CATG	9 cut(s)	10, 19, 129, 187, 230, 413, 704, 738, 853
NlaIV	GGNNCC	2 cut(s)	662, 846
NspI	RCATGY	3 cut(s)	129, 187, 738
OliI	CACNNNNGTG	1 cut(s)	453
PaeI	GCATGC	1 cut(s)	187
PagI	TCATGA	1 cut(s)	6
PctI	GAATGC	2 cut(s)	725, 881
PdiI	GCCGGC	1 cut(s)	445
PdmI	GAANNNNTTC	2 cut(s)	387, 514
PflMI	CCANNNNNTGG	2 cut(s)	545, 922
PkrI	GCNGC	4 cut(s)	58, 131, 219, 361
PspN4I	GGNNCC	2 cut(s)	662, 846
PspPI	GGNCC	1 cut(s)	326
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	5 cut(s)	524, 696, 920, 975, 981
SatI	GCNGC	4 cut(s)	57, 130, 218, 360
Sau3AI	GATC	3 cut(s)	345, 607, 795
Sau96I	GGNCC	1 cut(s)	326
ScaI	AGTACT	1 cut(s)	582
SduI	GDGCHC	2 cut(s)	102, 685
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	453
SphI	GCATGC	1 cut(s)	187
Sse9I	AATT	5 cut(s)	203, 370, 969, 977, 982
SsiI	CCGC	1 cut(s)	359
SspI	AATATT	1 cut(s)	148
SspMI	CTAG	3 cut(s)	48, 434, 479
StyI	CCWWGG	2 cut(s)	226, 789
TaaI	ACNGT	3 cut(s)	13, 818, 952
TaqI	TCGA	1 cut(s)	508
TasI	AATT	5 cut(s)	203, 370, 969, 977, 982
TatI	WGTACW	1 cut(s)	580
TauI	GCSGC	1 cut(s)	362
Tru1I	TTAA	5 cut(s)	524, 696, 920, 975, 981
Tru9I	TTAA	5 cut(s)	524, 696, 920, 975, 981
TscAI	CASTG	2 cut(s)	58, 627
TseI	GCWGC	3 cut(s)	56, 129, 217
TspDTI	ATGAA	3 cut(s)	280, 591, 798
TspRI	CASTG	2 cut(s)	58, 627
Van91I	CCANNNNNTGG	2 cut(s)	545, 922
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	2 cut(s)	203, 977
XceI	RCATGY	3 cut(s)	129, 187, 738
XmiI	GTMKAC	1 cut(s)	353
XmnI	GAANNNNTTC	2 cut(s)	387, 514
XspI	CTAG	3 cut(s)	48, 434, 479
ZrmI	AGTACT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.