Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011927

Physical Location & Seq

Genomic Coordinates Reverse (-)

63048455 .. 63050327

Gene Structure 1873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010105

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGTCTACTTCATCTTGTTCAAATGTTTTTGAGCTTGGAAAGTACAGGGTAGAACTCCAAACAGTTGAGGCAGCAGAGTCTAGTCGATGCTGCAGCAACAAGTCTTCTTCAAGTGTTTCGGTTCCGCCTCCGAAACCGCTTTTGATTGGCTTGCCTTGTGAAGCTGGAGAGTTCCCAGTGCTGCTTCTCCTCCATGGTTTCCTTCTCTCCAACTCTTTCTATTCTCAGCTTATCCAACACGTTGCTTCTCATGGCTTCATCGTCATTGCTCCTCAGTTGTATACAATAGCTGGATCAGATACAAGTGATGAGATCAAGTCCACAGCTGCAATAACAAACTGGTTATCAGAAGGACTTCAATCCTTGCTTCCACCCCATGTTCAAGCAAATCTAAACAAGCTAGCACTCGCCGGCCACAGCCGCGGAGGCAAAGTTTCTTTTGCTCTAGCATTAGGGAAAGAAGGCATCACTACTAGCTTGAAATTTTCAGCCTTAATAGGCATAGACCCCGTTGATGGAATGGACACAGGGAAACAGACCCCTCCACCAGTACTAACCTATGTCCCTCATTCTTTCGATCTCGATGACATGGCGGTAATGGTGGTTGGTACTGGTTTGGGTGAAGTGAAGAGAAACCCTCTATTCCCTGCTTGTGCTCCAAAGGGTGTTAACCATAAGGAGTTCTTCAACGAGTGTCGCAAACCGGCTTGTTACTTTGTGGCCAAGGATTATGGGCATCTTGATATGCTTGATGATGAGACGAAGGGGATTAGAGGGAAGGCTACATATTGTTTGTGCAAAAATGGCAAGTCTAGGGAACCCATGAGAAAATTTGTTGGAGGAGTTGTGGTTGCTTTCGTTAAAGCCTATTTGGGAGGGGATATGAGTGAACTAATGGCTATAAGAGAAGGAAGGCATGAGGCTGCACCAATTGAGCTTCAAACTGTTGAATTCTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0051186 GO:0051187 GO:0052689 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

321

Amino Acids

34.5

Weight (kDa)

6.51

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	6 - 318	6e-137	Chlorophyllase
Abhydrolase_6	PF12697	61 - 186	9.5e-06	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43860
fragaria_vesca	FvH4_4g00030 FvH4_4g01061 FvH4_4g01061
malus_domestica	MD13G1198800.v1.1 MD16G1199000.v1.1
prunus_persica	Prupe.1G020600_v2.0.a1
pyrus_communis	pycom13g17260 pycom16g16760
rosa_laevigata	RLG00000010105
rosa_multiflora	Rmu_sc0003953.1_g000005 Rmu_sc0012183.1_g000004
rosa_roxburghii	Rroxscaffold_5G00334310
rosa_rugosa	Rorug03G0311700
rosa_samantha	Rh4AG017300 Rh4BG012100 Rh4CG018500 Rh4DG013100
rosa_wichuraiana	Rw4G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	5, 281
AccII	CGCG	1 cut(s)	423
AciI	CCGC	5 cut(s)	125, 137, 421, 423, 593
AclWI	GGATC	1 cut(s)	301
AcoI	YGGCCR	2 cut(s)	412, 720
AcsI	RAATTY	3 cut(s)	482, 830, 950
AfaI	GTAC	3 cut(s)	44, 552, 610
AfiI	CCNNNNNNNGG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	8 cut(s)	21, 111, 359, 383, 481, 688, 941, 950
AluBI	AGCT	8 cut(s)	34, 164, 229, 290, 326, 400, 477, 937
AluI	AGCT	8 cut(s)	34, 164, 229, 290, 326, 400, 477, 937
Alw21I	GWGCWC	1 cut(s)	658
Alw26I	GTCTC	1 cut(s)	752
AlwI	GGATC	1 cut(s)	301
AoxI	GGCC	2 cut(s)	412, 720
ApeKI	GCWGC	6 cut(s)	71, 90, 93, 181, 326, 923
ApoI	RAATTY	3 cut(s)	482, 830, 950
Asp700I	GAANNNNTTC	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	632
AsuNHI	GCTAGC	1 cut(s)	400
BalI	TGGCCA	1 cut(s)	722
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	658
BbvI	GCAGC	6 cut(s)	77, 83, 105, 168, 313, 910
BccI	CCATC	1 cut(s)	509
BcoDI	GTCTC	1 cut(s)	752
BfaI	CTAG	5 cut(s)	81, 401, 446, 474, 813
BfmI	CTRYAG	1 cut(s)	91
BglI	GCCNNNNNGGC	1 cut(s)	426
BisI	GCNGC	7 cut(s)	72, 91, 94, 182, 327, 421, 924
BlsI	GCNGC	7 cut(s)	73, 92, 95, 183, 328, 422, 925
BmcAI	AGTACT	1 cut(s)	552
BmiI	GGNNCC	2 cut(s)	123, 819
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	3 cut(s)	77, 474, 745
BmtI	GCTAGC	1 cut(s)	404
BmuI	ACTGGG	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	96
BplI	GAGNNNNNCTC	2 cut(s)	622, 654
BpmI	CTGGAG	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	193, 421, 723
BsaXI	ACNNNNNCTCC	6 cut(s)	417, 447, 831, 834, 861, 864
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse118I	RCCGGY	2 cut(s)	410, 703
Bse1I	ACTGG	4 cut(s)	176, 344, 548, 616
Bse3DI	GCAATG	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	193, 421, 723
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	239, 287
BseNI	ACTGG	4 cut(s)	176, 344, 548, 616
BseRI	GAGGAG	3 cut(s)	179, 261, 855
BseXI	GCAGC	6 cut(s)	77, 83, 105, 168, 313, 910
BsgI	GTGCAG	1 cut(s)	909
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	2 cut(s)	414, 722
BsiHKAI	GWGCWC	1 cut(s)	658
BsiSI	CCGG	2 cut(s)	411, 704
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	1 cut(s)	752
BsmBI	CGTCTC	1 cut(s)	752
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	2 cut(s)	414, 722
Bsp1286I	GDGCHC	1 cut(s)	658
Bsp143I	GATC	3 cut(s)	293, 312, 577
Bsp19I	CCATGG	1 cut(s)	193
BspACI	CCGC	5 cut(s)	125, 137, 421, 423, 593
BspANI	GGCC	2 cut(s)	414, 722
BspCNI	CTCAG	2 cut(s)	238, 286
BspFNI	CGCG	1 cut(s)	423
BspLI	GGNNCC	2 cut(s)	123, 819
BspMAI	CTGCAG	1 cut(s)	95
BspOI	GCTAGC	1 cut(s)	404
BspPI	GGATC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	264
BsrFI	RCCGGY	2 cut(s)	410, 703
BsrI	ACTGG	4 cut(s)	176, 344, 548, 616
BssAI	RCCGGY	2 cut(s)	410, 703
BssECI	CCNNGG	3 cut(s)	193, 421, 723
BssMI	GATC	3 cut(s)	293, 312, 577
BssNAI	GTATAC	1 cut(s)	282
BssT1I	CCWWGG	2 cut(s)	193, 723
Bst1107I	GTATAC	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	64, 946
Bst6I	CTCTTC	1 cut(s)	623
BstC8I	GCNNGC	3 cut(s)	152, 402, 412
BstDEI	CTNAG	2 cut(s)	225, 273
BstDSI	CCRYGG	2 cut(s)	193, 421
BstFNI	CGCG	1 cut(s)	423
BstKTI	GATC	3 cut(s)	296, 315, 580
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	3 cut(s)	293, 312, 577
BstMWI	GCNNNNNNNGC	3 cut(s)	420, 426, 804
BstSFI	CTRYAG	1 cut(s)	91
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	6 cut(s)	77, 83, 105, 168, 313, 910
BstV2I	GAAGAC	1 cut(s)	96
BstZ17I	GTATAC	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	414, 722
BtgI	CCRYGG	2 cut(s)	193, 421
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	3 cut(s)	152, 402, 412
Cfr10I	RCCGGY	2 cut(s)	410, 703
Cfr42I	CCGCGG	1 cut(s)	424
Csp6I	GTAC	3 cut(s)	43, 551, 609
CviAII	CATG	6 cut(s)	194, 251, 377, 589, 823, 917
CviQI	GTAC	3 cut(s)	43, 551, 609
DdeI	CTNAG	2 cut(s)	225, 273
DpnI	GATC	3 cut(s)	295, 314, 579
DpnII	GATC	3 cut(s)	293, 312, 577
EaeI	YGGCCR	2 cut(s)	412, 720
Eam1104I	CTCTTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	623
EciI	GGCGGA	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	193, 723
EcoRI	GAATTC	1 cut(s)	950
EcoT14I	CCWWGG	2 cut(s)	193, 723
ErhI	CCWWGG	2 cut(s)	193, 723
Esp3I	CGTCTC	1 cut(s)	752
FaeI	CATG	6 cut(s)	197, 254, 380, 592, 826, 920
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	6 cut(s)	193, 250, 376, 588, 822, 916
FblI	GTMKAC	2 cut(s)	5, 281
Fnu4HI	GCNGC	7 cut(s)	72, 91, 94, 182, 327, 421, 924
Fsp4HI	GCNGC	7 cut(s)	72, 91, 94, 182, 327, 421, 924
FspBI	CTAG	5 cut(s)	81, 401, 446, 474, 813
GluI	GCNGC	7 cut(s)	72, 91, 94, 182, 327, 421, 924
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	414, 722
HapII	CCGG	2 cut(s)	411, 704
Hin1II	CATG	6 cut(s)	197, 254, 380, 592, 826, 920
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HinfI	GANTC	1 cut(s)	77
HpaI	GTTAAC	1 cut(s)	670
HpaII	CCGG	2 cut(s)	411, 704
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	5 cut(s)	6, 282, 321, 670, 890
Hpy188I	TCNGA	3 cut(s)	132, 298, 349
Hpy188III	TCNNGA	2 cut(s)	581, 740
Hpy8I	GTNNAC	5 cut(s)	6, 282, 321, 670, 890
HpyAV	CCTTC	7 cut(s)	212, 344, 455, 757, 772, 902, 906
HpyCH4III	ACNGT	2 cut(s)	64, 946
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	4 cut(s)	93, 329, 798, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	420, 426, 804
HpyF3I	CTNAG	2 cut(s)	225, 273
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	6 cut(s)	197, 254, 380, 592, 826, 920
KroI	GCCGGC	1 cut(s)	410
KroNI	GCCGGC	1 cut(s)	412
KspAI	GTTAAC	1 cut(s)	670
KspI	CCGCGG	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	293, 312, 577
LmnI	GCTCC	2 cut(s)	274, 661
Lsp1109I	GCAGC	6 cut(s)	77, 83, 105, 168, 313, 910
LweI	GCATC	3 cut(s)	77, 474, 745
MaeI	CTAG	5 cut(s)	81, 401, 446, 474, 813
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	710
MalI	GATC	3 cut(s)	295, 314, 579
MboI	GATC	3 cut(s)	293, 312, 577
MboII	GAAGA	4 cut(s)	96, 99, 640, 676
MfeI	CAATTG	1 cut(s)	930
MhlI	GDGCHC	1 cut(s)	658
MlsI	TGGCCA	1 cut(s)	722
MluCI	AATT	4 cut(s)	482, 830, 930, 950
MluNI	TGGCCA	1 cut(s)	722
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	3 cut(s)	234, 259, 817
Mox20I	TGGCCA	1 cut(s)	722
MroNI	GCCGGC	1 cut(s)	410
MroXI	GAANNNNTTC	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	722
MseI	TTAA	3 cut(s)	494, 669, 861
Msp20I	TGGCCA	1 cut(s)	722
MspA1I	CMGCKG	2 cut(s)	326, 423
MspI	CCGG	2 cut(s)	411, 704
MunI	CAATTG	1 cut(s)	930
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	3 cut(s)	420, 426, 804
NaeI	GCCGGC	1 cut(s)	412
NcoI	CCATGG	1 cut(s)	193
NdeII	GATC	3 cut(s)	293, 312, 577
NgoMIV	GCCGGC	1 cut(s)	410
NheI	GCTAGC	1 cut(s)	400
NlaIII	CATG	6 cut(s)	197, 254, 380, 592, 826, 920
NlaIV	GGNNCC	2 cut(s)	123, 819
PdiI	GCCGGC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	354
PkrI	GCNGC	7 cut(s)	73, 92, 95, 183, 328, 422, 925
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	123, 819
PstI	CTGCAG	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	3 cut(s)	44, 552, 610
RsaNI	GTAC	3 cut(s)	43, 551, 609
SacII	CCGCGG	1 cut(s)	424
SaqAI	TTAA	3 cut(s)	494, 669, 861
SatI	GCNGC	7 cut(s)	72, 91, 94, 182, 327, 421, 924
Sau3AI	GATC	3 cut(s)	293, 312, 577
ScaI	AGTACT	1 cut(s)	552
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	658
SfaNI	GCATC	3 cut(s)	77, 474, 745
SfcI	CTRYAG	1 cut(s)	91
Sfr303I	CCGCGG	1 cut(s)	424
SgrBI	CCGCGG	1 cut(s)	424
Sse9I	AATT	4 cut(s)	482, 830, 930, 950
SsiI	CCGC	5 cut(s)	125, 137, 421, 423, 593
SspMI	CTAG	5 cut(s)	81, 401, 446, 474, 813
StyI	CCWWGG	2 cut(s)	193, 723
TaaI	ACNGT	2 cut(s)	64, 946
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	3 cut(s)	85, 576, 582
TasI	AATT	4 cut(s)	482, 830, 930, 950
TatI	WGTACW	2 cut(s)	42, 550
TauI	GCSGC	1 cut(s)	423
Tru1I	TTAA	3 cut(s)	494, 669, 861
Tru9I	TTAA	3 cut(s)	494, 669, 861
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	6 cut(s)	71, 90, 93, 181, 326, 923
TspDTI	ATGAA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	183
XapI	RAATTY	3 cut(s)	482, 830, 950
XmiI	GTMKAC	2 cut(s)	5, 281
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	5 cut(s)	81, 401, 446, 474, 813
ZrmI	AGTACT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.