Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0011927

Physical Location & Seq

Genomic Coordinates Forward (+)

3700618 .. 3702770

Gene Structure 2153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG018500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCTTTGTTTAGCAACAGTGACTCATATGCAGACAGTGTTCATATCCAATTTTCCTTCAAGCCACTCTCAATTATTAATGATTGCCTTACTCTGCAAGATAGAGGCTTTTAGGTTCTTTAAGTTGTATACAATAGCTGGATCAGATACAAGTGATGAGATCAAGTCCACAGCTGCAATAACAAACTGGTTATCAGAAGGACTTCAATCCTTGCTTCCACCCCATGTTCAAGCAAATCTAAACAAGCTAGCACTCGCCGGCCACAGCCGCGGAGGCAAAGTTTCTTTTGCTCTAGCATTAGGGAAAGAAGGCATCACTACTGGCTTGAAATTTTCAGCCTTAATAGGCATAGACCCAGTTGATGGAATGGACACAGGGAAACAGACCCCTCCACCAGTACTAACCTATGTCCCTCATTCTTTCGATCTCGATGACATGGCAGTGATGGTGATTGGTACTGGTTTGGGTGAAGTGAAGAGAAACCCTCTATTCCCTGCCTGTGCTCCAAAGGGTGTTAACCATGTGGAGTTCTTCAAAGAGTGTCGAAAACCGGCTTGTTACTTTGTGGCCAAGGATTATGGGCATCTTGATATGCTTGATGATGAGACAAAGGGGATTAGAGGGAAGGCTACATATTGTTTGTGCAAAAATGGCAAGTCTAGGGAACCCTTGAGAAAATTTGTTGGAGGAGTTGTGGTTGCTTTCGTTAAAGCCTATTTGGGAGGGGATATGAGTGAACTAATGGCTATAAGAGAAGGAGGGCATGAGGCTGCACCAATTGAGCTTCAAACTGTTGAATTCTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0051186 GO:0051187 GO:0052689 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

269

Amino Acids

29.19

Weight (kDa)

7.07

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	41 - 267	1.2e-100	Chlorophyllase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43860
fragaria_vesca	FvH4_4g00030 FvH4_4g01061 FvH4_4g01061
malus_domestica	MD13G1198800.v1.1 MD16G1199000.v1.1
prunus_persica	Prupe.1G020600_v2.0.a1
pyrus_communis	pycom13g17260 pycom16g16760
rosa_laevigata	RLG00000010105
rosa_multiflora	Rmu_sc0003953.1_g000005 Rmu_sc0012183.1_g000004
rosa_roxburghii	Rroxscaffold_5G00334310
rosa_rugosa	Rorug03G0311700
rosa_samantha	Rh4AG017300 Rh4BG012100 Rh4CG018500 Rh4DG013100
rosa_wichuraiana	Rw4G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	128
AccII	CGCG	1 cut(s)	270
AciI	CCGC	2 cut(s)	268, 270
AclWI	GGATC	1 cut(s)	148
AcoI	YGGCCR	2 cut(s)	259, 567
AcsI	RAATTY	3 cut(s)	329, 677, 797
AfaI	GTAC	2 cut(s)	399, 457
AfiI	CCNNNNNNNGG	1 cut(s)	362
AgsI	TTSAA	7 cut(s)	60, 206, 230, 328, 535, 788, 797
AluBI	AGCT	4 cut(s)	137, 173, 247, 784
AluI	AGCT	4 cut(s)	137, 173, 247, 784
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	1 cut(s)	599
AlwI	GGATC	1 cut(s)	148
AoxI	GGCC	2 cut(s)	259, 567
ApeKI	GCWGC	2 cut(s)	173, 770
ApoI	RAATTY	3 cut(s)	329, 677, 797
AseI	ATTAAT	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	201
AsuHPI	GGTGA	2 cut(s)	460, 479
AsuNHI	GCTAGC	1 cut(s)	247
BalI	TGGCCA	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	2 cut(s)	160, 757
BccI	CCATC	2 cut(s)	356, 439
BcoDI	GTCTC	1 cut(s)	599
BfaI	CTAG	3 cut(s)	248, 293, 660
BglI	GCCNNNNNGGC	1 cut(s)	273
BisI	GCNGC	3 cut(s)	174, 268, 771
BlsI	GCNGC	3 cut(s)	175, 269, 772
BmcAI	AGTACT	1 cut(s)	399
BmiI	GGNNCC	1 cut(s)	666
BmrI	ACTGGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	321, 592
BmtI	GCTAGC	1 cut(s)	251
BmuI	ACTGGG	1 cut(s)	350
BplI	GAGNNNNNCTC	2 cut(s)	469, 501
BpuEI	CTTGAG	1 cut(s)	691
BsaJI	CCNNGG	2 cut(s)	268, 570
BsaXI	ACNNNNNCTCC	6 cut(s)	264, 294, 678, 681, 708, 711
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse118I	RCCGGY	2 cut(s)	257, 550
Bse1I	ACTGG	5 cut(s)	191, 325, 356, 395, 463
BseDI	CCNNGG	2 cut(s)	268, 570
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseNI	ACTGG	5 cut(s)	191, 325, 356, 395, 463
BseRI	GAGGAG	1 cut(s)	702
BseXI	GCAGC	2 cut(s)	160, 757
BsgI	GTGCAG	1 cut(s)	756
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	2 cut(s)	261, 569
BsiHKAI	GWGCWC	1 cut(s)	505
BsiSI	CCGG	2 cut(s)	258, 551
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmAI	GTCTC	1 cut(s)	599
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	261, 569
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp143I	GATC	3 cut(s)	140, 159, 424
BspACI	CCGC	2 cut(s)	268, 270
BspANI	GGCC	2 cut(s)	261, 569
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	666
BspOI	GCTAGC	1 cut(s)	251
BspPI	GGATC	1 cut(s)	148
BsrFI	RCCGGY	2 cut(s)	257, 550
BsrI	ACTGG	5 cut(s)	191, 325, 356, 395, 463
BssAI	RCCGGY	2 cut(s)	257, 550
BssECI	CCNNGG	2 cut(s)	268, 570
BssMI	GATC	3 cut(s)	140, 159, 424
BssNAI	GTATAC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	570
Bst1107I	GTATAC	1 cut(s)	129
Bst4CI	ACNGT	3 cut(s)	19, 37, 793
Bst6I	CTCTTC	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	249, 259
BstDSI	CCRYGG	1 cut(s)	268
BstFNI	CGCG	1 cut(s)	270
BstKTI	GATC	3 cut(s)	143, 162, 427
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	3 cut(s)	140, 159, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	267, 273, 651
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	160, 757
BstZ17I	GTATAC	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	261, 569
BtgI	CCRYGG	1 cut(s)	268
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	3 cut(s)	24, 42, 447
Cac8I	GCNNGC	2 cut(s)	249, 259
Cfr10I	RCCGGY	2 cut(s)	257, 550
Cfr42I	CCGCGG	1 cut(s)	271
Csp6I	GTAC	2 cut(s)	398, 456
CviAII	CATG	4 cut(s)	224, 436, 521, 764
CviQI	GTAC	2 cut(s)	398, 456
DpnI	GATC	3 cut(s)	142, 161, 426
DpnII	GATC	3 cut(s)	140, 159, 424
EaeI	YGGCCR	2 cut(s)	259, 567
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
Eco130I	CCWWGG	1 cut(s)	570
EcoRI	GAATTC	1 cut(s)	797
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	4 cut(s)	227, 439, 524, 767
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	4 cut(s)	223, 435, 520, 763
FauNDI	CATATG	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	3 cut(s)	174, 268, 771
Fsp4HI	GCNGC	3 cut(s)	174, 268, 771
FspBI	CTAG	3 cut(s)	248, 293, 660
GluI	GCNGC	3 cut(s)	174, 268, 771
HaeIII	GGCC	2 cut(s)	261, 569
HapII	CCGG	2 cut(s)	258, 551
Hin1II	CATG	4 cut(s)	227, 439, 524, 767
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HinfI	GANTC	1 cut(s)	22
HpaI	GTTAAC	1 cut(s)	517
HpaII	CCGG	2 cut(s)	258, 551
HphI	GGTGA	2 cut(s)	460, 479
Hpy166II	GTNNAC	4 cut(s)	129, 168, 517, 737
Hpy188I	TCNGA	2 cut(s)	145, 196
Hpy188III	TCNNGA	2 cut(s)	428, 587
Hpy8I	GTNNAC	4 cut(s)	129, 168, 517, 737
HpyAV	CCTTC	5 cut(s)	66, 191, 302, 619, 749
HpyCH4III	ACNGT	3 cut(s)	19, 37, 793
HpyCH4V	TGCA	5 cut(s)	31, 96, 176, 645, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	267, 273, 651
Hsp92II	CATG	4 cut(s)	227, 439, 524, 767
KroI	GCCGGC	1 cut(s)	257
KroNI	GCCGGC	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	517
KspI	CCGCGG	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	140, 159, 424
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	2 cut(s)	160, 757
LweI	GCATC	2 cut(s)	321, 592
MaeI	CTAG	3 cut(s)	248, 293, 660
MaeIII	GTNAC	2 cut(s)	19, 557
MalI	GATC	3 cut(s)	142, 161, 426
MboI	GATC	3 cut(s)	140, 159, 424
MboII	GAAGA	2 cut(s)	487, 523
MfeI	CAATTG	1 cut(s)	777
MhlI	GDGCHC	1 cut(s)	505
MlsI	TGGCCA	1 cut(s)	569
MluCI	AATT	6 cut(s)	49, 71, 329, 677, 777, 797
MluNI	TGGCCA	1 cut(s)	569
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	664
Mox20I	TGGCCA	1 cut(s)	569
MroNI	GCCGGC	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	569
MseI	TTAA	5 cut(s)	77, 120, 341, 516, 708
MslI	CAYNNNNRTG	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	569
MspA1I	CMGCKG	2 cut(s)	173, 270
MspI	CCGG	2 cut(s)	258, 551
MunI	CAATTG	1 cut(s)	777
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	3 cut(s)	267, 273, 651
NaeI	GCCGGC	1 cut(s)	259
NdeI	CATATG	1 cut(s)	27
NdeII	GATC	3 cut(s)	140, 159, 424
NgoMIV	GCCGGC	1 cut(s)	257
NheI	GCTAGC	1 cut(s)	247
NlaIII	CATG	4 cut(s)	227, 439, 524, 767
NlaIV	GGNNCC	1 cut(s)	666
NmuCI	GTSAC	1 cut(s)	19
PdiI	GCCGGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	201
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	3 cut(s)	175, 269, 772
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PshBI	ATTAAT	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	666
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	2 cut(s)	399, 457
RsaNI	GTAC	2 cut(s)	398, 456
RseI	CAYNNNNRTG	1 cut(s)	440
SacII	CCGCGG	1 cut(s)	271
SaqAI	TTAA	5 cut(s)	77, 120, 341, 516, 708
SatI	GCNGC	3 cut(s)	174, 268, 771
Sau3AI	GATC	3 cut(s)	140, 159, 424
ScaI	AGTACT	1 cut(s)	399
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	505
SetI	ASST	6 cut(s)	116, 139, 175, 249, 407, 786
SfaNI	GCATC	2 cut(s)	321, 592
Sfr303I	CCGCGG	1 cut(s)	271
SgrBI	CCGCGG	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	670
SmoI	CTYRAG	1 cut(s)	670
Sse9I	AATT	6 cut(s)	49, 71, 329, 677, 777, 797
SsiI	CCGC	2 cut(s)	268, 270
SspMI	CTAG	3 cut(s)	248, 293, 660
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	3 cut(s)	19, 37, 793
TaqI	TCGA	3 cut(s)	423, 429, 544
TasI	AATT	6 cut(s)	49, 71, 329, 677, 777, 797
TatI	WGTACW	1 cut(s)	397
TauI	GCSGC	1 cut(s)	270
Tru1I	TTAA	5 cut(s)	77, 120, 341, 516, 708
Tru9I	TTAA	5 cut(s)	77, 120, 341, 516, 708
TscAI	CASTG	3 cut(s)	24, 42, 447
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	173, 770
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	31
TspRI	CASTG	3 cut(s)	24, 42, 447
Van91I	CCANNNNNTGG	1 cut(s)	362
VspI	ATTAAT	1 cut(s)	77
XapI	RAATTY	3 cut(s)	329, 677, 797
XmiI	GTMKAC	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	3 cut(s)	248, 293, 660
ZrmI	AGTACT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.