Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011927

Physical Location & Seq

Genomic Coordinates Forward (+)

17943192 .. 17943629

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1199000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGACACAGGGAAACAAACCCCTCCACCAGTGCTAACCTATGTTCTTCAGTCATTCCATCTTGAGATGCCTGTGATGGTGATTGGTTCAGGTTTGGGTGAAGTGAAAAGGAACCCTCTATTTCCTCCTTGTGCTCCAAAGGGTGTTAACCATGAGGACTTCTTCAACGAATGCCGGAAACTGGCTTGTTATTTTGTGGCAAGGGATTATGGCCATCTTGACATGCTAGATGATGATACCAAGGGGATTACAGGGAAAGCTACATATTGTTTATGCAAAAATGGGAAGTCTAGGGAGCCCATGAGGAGGTTTGTTGGAGGGGTTGTGGTTGCTTTCATAAAAGCTTATTTAGAAGGCGATAGTAGCCACCTATTGGCTATAAGAGAAGGGGTTGAGACTTTGCCAATAGAGCTTCAAATTGTCAAACTTCTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0051186 GO:0051187 GO:0052689 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

146

Amino Acids

16.13

Weight (kDa)

6.89

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	2 - 142	2.6e-62	Chlorophyllase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43860
fragaria_vesca	FvH4_4g00030 FvH4_4g01061 FvH4_4g01061
malus_domestica	MD13G1198800.v1.1 MD16G1199000.v1.1
prunus_persica	Prupe.1G020600_v2.0.a1
pyrus_communis	pycom13g17260 pycom16g16760
rosa_laevigata	RLG00000010105
rosa_multiflora	Rmu_sc0003953.1_g000005 Rmu_sc0012183.1_g000004
rosa_roxburghii	Rroxscaffold_5G00334310
rosa_rugosa	Rorug03G0311700
rosa_samantha	Rh4AG017300 Rh4BG012100 Rh4CG018500 Rh4DG013100
rosa_wichuraiana	Rw4G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	373
AcoI	YGGCCR	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	32
AfiI	CCNNNNNNNGG	3 cut(s)	181, 306, 373
AgsI	TTSAA	2 cut(s)	166, 416
AluBI	AGCT	3 cut(s)	260, 344, 412
AluI	AGCT	3 cut(s)	260, 344, 412
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	389
AoxI	GGCC	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	91, 110
BalI	TGGCCA	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	136
BccI	CCATC	3 cut(s)	66, 70, 222
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	2 cut(s)	227, 291
BmiI	GGNNCC	2 cut(s)	113, 297
BmsI	GCATC	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	240
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 306, 373
Bse1I	ACTGG	2 cut(s)	29, 186
BseDI	CCNNGG	1 cut(s)	240
BseLI	CCNNNNNNNGG	3 cut(s)	181, 306, 373
BseNI	ACTGG	2 cut(s)	29, 186
BseRI	GAGGAG	1 cut(s)	319
BshFI	GGCC	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	175
BslI	CCNNNNNNNGG	3 cut(s)	181, 306, 373
BsmAI	GTCTC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	136, 300
BspANI	GGCC	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	113, 297
BsrI	ACTGG	2 cut(s)	29, 186
BssECI	CCNNGG	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	389
BstMWI	GCNNNNNNNGC	2 cut(s)	363, 409
BstNSI	RCATGY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	36
CviAII	CATG	3 cut(s)	152, 223, 301
CviJI	RGCY	8 cut(s)	185, 213, 260, 298, 344, 366, 377, 412
CviKI_1	RGCY	8 cut(s)	185, 213, 260, 298, 344, 366, 377, 412
EaeI	YGGCCR	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	3 cut(s)	155, 226, 304
FaiI	YATR	9 cut(s)	42, 153, 210, 224, 265, 274, 302, 338, 380
FatI	CATG	3 cut(s)	151, 222, 300
FriOI	GRGCYC	1 cut(s)	300
FspBI	CTAG	2 cut(s)	227, 291
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	175
Hin1II	CATG	3 cut(s)	155, 226, 304
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	342
HpaI	GTTAAC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	2 cut(s)	91, 110
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	62, 218
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	347, 380
HpyCH4V	TGCA	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	363, 409
Hsp92II	CATG	3 cut(s)	155, 226, 304
KspAI	GTTAAC	1 cut(s)	148
LmnI	GCTCC	2 cut(s)	139, 295
LpnPI	CCDG	6 cut(s)	42, 75, 84, 167, 188, 237
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	2 cut(s)	227, 291
MboII	GAAGA	2 cut(s)	38, 154
MhlI	GDGCHC	2 cut(s)	136, 300
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	1 cut(s)	417
MluNI	TGGCCA	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	7 cut(s)	33, 126, 135, 148, 297, 300, 311
Mox20I	TGGCCA	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	213
MspI	CCGG	1 cut(s)	175
Mva1269I	GAATGC	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	363, 409
NlaIII	CATG	3 cut(s)	155, 226, 304
NlaIV	GGNNCC	2 cut(s)	113, 297
NspI	RCATGY	1 cut(s)	226
PctI	GAATGC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	113, 297
SaqAI	TTAA	1 cut(s)	147
SduI	GDGCHC	2 cut(s)	136, 300
SetI	ASST	7 cut(s)	41, 94, 262, 311, 346, 372, 414
SfaNI	GCATC	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	417
SspMI	CTAG	2 cut(s)	227, 291
StyI	CCWWGG	1 cut(s)	240
TasI	AATT	1 cut(s)	417
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	36
TspDTI	ATGAA	1 cut(s)	325
TspRI	CASTG	1 cut(s)	36
Van91I	CCANNNNNTGG	1 cut(s)	373
XceI	RCATGY	1 cut(s)	226
XspI	CTAG	2 cut(s)	227, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.