Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011927

Physical Location & Seq

Genomic Coordinates Forward (+)

17629714 .. 17633062

Gene Structure 3349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1198800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGACAGCCATGTCCTCCTCCGCTTCTTCTTCTTCGATTGCCATCTCTGGTACAAATGTTTTTGAGATTGGAACTTACAAAGTTGTCCTCCAGATAATTGAAGCAGCAGAGAGGAGTGCATGCAGCAGCAAAACCAAGTCGTCGTCGTCGTCGTCAACTTCTCCTCCTACTAATCCACCGCCTCCAAAACCACTATTGATTGGCATGCCTTGTGAAGCTGCTGGAGAGTTCCCAGTGTTGCTGCTCCTCCATGGTTACCTTCTCTCCAACTCCTTCTACTCCCAGCTTATCAGCCACATCGCTTCTCATGGCTTCATTGTCATTGCCCCTCAGTTATATACCATAGCTGGACCAGACACAACTGATGAGATCAAGTCCACAGCTGCAATAACAAACTGGTTATCTAATGGACTTCAACCCTTGCTTCCACCCAATGTTCAGGCAAATCTAAGCAAGCTAGGACTCGCCGGCCATAGCCGCGGAGGCAAGGTTTCATTTGCACTAGCTTTAGGGAAAGAAGAAATTGGCACCAGCTTAAAGTTTTCAGCCCTAATCGGCATTGACCCGGTTGACGGAATGGACAAAGGGAAACAAACTCCTCCGCCAGTGCTAACCTATGCTCCTCATTCATTTGATCTTGACATGGCGGTGATGGTGATCGGTTCGGGTTTGGGAGAAGTGAAAAAGAACCCTCTATTCCCTCCTTGTGCTCCAAAGGGTGTTAACCATGAGGACTTCTTCAACGAATGCCGGAAACCGGCTTGTTATTTTGTGGCGAAGGATTATGGCCATCTTGACATGCTAGACGATGAGACCAAAGGGATTAGAGGGAAAGCTACGTATTGTTTGTGCAAAAATGGGCAGTCTAGGGAGCCCATGAGGAGGTTTGTTGGAGGGGTTGTGGTTGCTTTCATAAAAGCTTATTTAGAAGGTGATAGTAGCCACTTATTGGCTATAAGAGAAGGGGTTGAGACTTTGCCAATAGAGCTTCAACGTGTTAAATTTCCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0051186 GO:0051187 GO:0052689 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

338

Amino Acids

35.95

Weight (kDa)

7.07

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	18 - 334	9.5e-136	Chlorophyllase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43860
fragaria_vesca	FvH4_4g00030 FvH4_4g01061 FvH4_4g01061
malus_domestica	MD13G1198800.v1.1 MD16G1199000.v1.1
prunus_persica	Prupe.1G020600_v2.0.a1
pyrus_communis	pycom13g17260 pycom16g16760
rosa_laevigata	RLG00000010105
rosa_multiflora	Rmu_sc0003953.1_g000005 Rmu_sc0012183.1_g000004
rosa_roxburghii	Rroxscaffold_5G00334310
rosa_rugosa	Rorug03G0311700
rosa_samantha	Rh4AG017300 Rh4BG012100 Rh4CG018500 Rh4DG013100
rosa_wichuraiana	Rw4G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AccB1I	GGYRCC	1 cut(s)	527
AccB7I	CCANNNNNTGG	1 cut(s)	949
AccII	CGCG	1 cut(s)	480
AciI	CCGC	6 cut(s)	21, 179, 478, 480, 602, 647
AcoI	YGGCCR	2 cut(s)	469, 787
AcsI	RAATTY	1 cut(s)	1001
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	4 cut(s)	572, 757, 882, 949
AflIII	ACRYGT	1 cut(s)	994
AgsI	TTSAA	4 cut(s)	101, 416, 742, 992
Alw21I	GWGCWC	1 cut(s)	712
Alw26I	GTCTC	2 cut(s)	806, 965
AoxI	GGCC	2 cut(s)	469, 787
ApeKI	GCWGC	6 cut(s)	104, 123, 126, 218, 241, 383
ApoI	RAATTY	1 cut(s)	1001
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	566
AsuHPI	GGTGA	3 cut(s)	661, 667, 944
AvaII	GGWCC	1 cut(s)	350
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BalI	TGGCCA	1 cut(s)	789
BanI	GGYRCC	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	876
Bbv12I	GWGCWC	1 cut(s)	712
BbvI	GCAGC	6 cut(s)	116, 135, 138, 205, 228, 370
BccI	CCATC	3 cut(s)	50, 646, 798
BcnI	CCSGG	1 cut(s)	566
BcoDI	GTCTC	2 cut(s)	806, 965
BfaI	CTAG	4 cut(s)	458, 503, 803, 867
BglI	GCCNNNNNGGC	1 cut(s)	483
BisI	GCNGC	7 cut(s)	105, 124, 127, 219, 242, 384, 478
BlsI	GCNGC	7 cut(s)	106, 125, 128, 220, 243, 385, 479
Bme1390I	CCNGG	1 cut(s)	566
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	529, 873
BmrFI	CCNGG	1 cut(s)	566
BmrI	ACTGGG	1 cut(s)	227
BmuI	ACTGGG	1 cut(s)	227
BpmI	CTGGAG	2 cut(s)	74, 243
BpuMI	CCSGG	1 cut(s)	566
BsaAI	YACGTR	1 cut(s)	840
BsaBI	GATNNNNATC	2 cut(s)	41, 656
BsaI	GGTCTC	1 cut(s)	806
BsaJI	CCNNGG	2 cut(s)	250, 478
Bsc4I	CCNNNNNNNGG	4 cut(s)	572, 757, 882, 949
Bse118I	RCCGGY	2 cut(s)	467, 757
Bse1I	ACTGG	3 cut(s)	233, 401, 605
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	2 cut(s)	41, 656
BseDI	CCNNGG	2 cut(s)	250, 478
BseJI	GATNNNNATC	2 cut(s)	41, 656
BseLI	CCNNNNNNNGG	4 cut(s)	572, 757, 882, 949
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	3 cut(s)	233, 401, 605
BseRI	GAGGAG	7 cut(s)	7, 127, 153, 236, 588, 612, 895
BseXI	GCAGC	6 cut(s)	116, 135, 138, 205, 228, 370
BseYI	CCCAGC	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	2 cut(s)	471, 789
BshNI	GGYRCC	1 cut(s)	527
BsiHKAI	GWGCWC	1 cut(s)	712
BsiSI	CCGG	4 cut(s)	468, 566, 751, 758
BslI	CCNNNNNNNGG	4 cut(s)	572, 757, 882, 949
BsmAI	GTCTC	2 cut(s)	806, 965
BsmI	GAATGC	1 cut(s)	752
BsnI	GGCC	2 cut(s)	471, 789
Bso31I	GGTCTC	1 cut(s)	806
Bsp1286I	GDGCHC	2 cut(s)	712, 876
Bsp143I	GATC	3 cut(s)	369, 634, 657
Bsp19I	CCATGG	1 cut(s)	250
BspACI	CCGC	6 cut(s)	21, 179, 478, 480, 602, 647
BspANI	GGCC	2 cut(s)	471, 789
BspCNI	CTCAG	1 cut(s)	343
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	2 cut(s)	529, 873
BspT107I	GGYRCC	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	806
BsrDI	GCAATG	1 cut(s)	321
BsrFI	RCCGGY	2 cut(s)	467, 757
BsrI	ACTGG	3 cut(s)	233, 401, 605
BssAI	RCCGGY	2 cut(s)	467, 757
BssECI	CCNNGG	2 cut(s)	250, 478
BssMI	GATC	3 cut(s)	369, 634, 657
BssT1I	CCWWGG	1 cut(s)	250
BstBAI	YACGTR	1 cut(s)	840
BstC8I	GCNNGC	4 cut(s)	121, 206, 455, 469
BstDEI	CTNAG	2 cut(s)	330, 449
BstDSI	CCRYGG	2 cut(s)	250, 478
BstEII	GGTNACC	1 cut(s)	254
BstFNI	CGCG	1 cut(s)	480
BstKTI	GATC	3 cut(s)	372, 637, 660
BstMAI	GTCTC	2 cut(s)	806, 965
BstMBI	GATC	3 cut(s)	369, 634, 657
BstMWI	GCNNNNNNNGC	3 cut(s)	477, 483, 985
BstNSI	RCATGY	3 cut(s)	123, 208, 802
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	564
BstSNI	TACGTA	1 cut(s)	840
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	6 cut(s)	116, 135, 138, 205, 228, 370
BsuRI	GGCC	2 cut(s)	471, 789
BtgI	CCRYGG	2 cut(s)	250, 478
BtgZI	GCGATG	1 cut(s)	283
BtsIMutI	CAGTG	2 cut(s)	240, 612
Cac8I	GCNNGC	4 cut(s)	121, 206, 455, 469
Cfr10I	RCCGGY	2 cut(s)	467, 757
Cfr13I	GGNCC	1 cut(s)	350
Cfr42I	CCGCGG	1 cut(s)	481
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	9 cut(s)	10, 120, 205, 251, 308, 643, 728, 799, 877
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	2 cut(s)	330, 449
DpnI	GATC	3 cut(s)	371, 636, 659
DpnII	GATC	3 cut(s)	369, 634, 657
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	2 cut(s)	469, 787
EciI	GGCGGA	1 cut(s)	591
Eco105I	TACGTA	1 cut(s)	840
Eco130I	CCWWGG	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	876
Eco31I	GGTCTC	1 cut(s)	806
Eco47I	GGWCC	1 cut(s)	350
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	876
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	9 cut(s)	13, 123, 208, 254, 311, 646, 731, 802, 880
FatI	CATG	9 cut(s)	9, 119, 204, 250, 307, 642, 727, 798, 876
Fnu4HI	GCNGC	7 cut(s)	105, 124, 127, 219, 242, 384, 478
FriOI	GRGCYC	1 cut(s)	876
Fsp4HI	GCNGC	7 cut(s)	105, 124, 127, 219, 242, 384, 478
FspBI	CTAG	4 cut(s)	458, 503, 803, 867
GluI	GCNGC	7 cut(s)	105, 124, 127, 219, 242, 384, 478
GsaI	CCCAGC	1 cut(s)	286
GsuI	CTGGAG	2 cut(s)	74, 243
HaeIII	GGCC	2 cut(s)	471, 789
HapII	CCGG	4 cut(s)	468, 566, 751, 758
Hin1II	CATG	9 cut(s)	13, 123, 208, 254, 311, 646, 731, 802, 880
HincII	GTYRAC	3 cut(s)	156, 571, 724
HindII	GTYRAC	3 cut(s)	156, 571, 724
HindIII	AAGCTT	1 cut(s)	918
HinfI	GANTC	1 cut(s)	462
HpaI	GTTAAC	1 cut(s)	724
HpaII	CCGG	4 cut(s)	468, 566, 751, 758
HphI	GGTGA	3 cut(s)	661, 667, 944
Hpy166II	GTNNAC	4 cut(s)	156, 378, 571, 724
Hpy188III	TCNNGA	3 cut(s)	91, 638, 794
Hpy8I	GTNNAC	4 cut(s)	156, 378, 571, 724
Hpy99I	CGWCG	4 cut(s)	145, 148, 151, 154
HpyAV	CCTTC	5 cut(s)	269, 283, 772, 923, 956
HpyCH4IV	ACGT	2 cut(s)	839, 994
HpyCH4V	TGCA	5 cut(s)	119, 123, 386, 500, 852
HpyF10VI	GCNNNNNNNGC	3 cut(s)	477, 483, 985
HpyF3I	CTNAG	2 cut(s)	330, 449
HpySE526I	ACGT	2 cut(s)	839, 994
Hsp92II	CATG	9 cut(s)	13, 123, 208, 254, 311, 646, 731, 802, 880
KroI	GCCGGC	1 cut(s)	467
KroNI	GCCGGC	1 cut(s)	469
KspAI	GTTAAC	1 cut(s)	724
KspI	CCGCGG	1 cut(s)	481
Kzo9I	GATC	3 cut(s)	369, 634, 657
LmnI	GCTCC	4 cut(s)	249, 625, 715, 871
Lsp1109I	GCAGC	6 cut(s)	116, 135, 138, 205, 228, 370
MaeI	CTAG	4 cut(s)	458, 503, 803, 867
MaeII	ACGT	2 cut(s)	839, 994
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	3 cut(s)	371, 636, 659
MboI	GATC	3 cut(s)	369, 634, 657
MboII	GAAGA	5 cut(s)	18, 21, 24, 530, 730
MhlI	GDGCHC	2 cut(s)	712, 876
MlsI	TGGCCA	1 cut(s)	789
MluCI	AATT	3 cut(s)	96, 522, 1001
MluNI	TGGCCA	1 cut(s)	789
MlyI	GAGTC	1 cut(s)	456
MmeI	TCCRAC	2 cut(s)	291, 871
Mox20I	TGGCCA	1 cut(s)	789
MroNI	GCCGGC	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	789
MseI	TTAA	3 cut(s)	536, 723, 999
MslI	CAYNNNNRTG	1 cut(s)	647
Msp20I	TGGCCA	1 cut(s)	789
MspA1I	CMGCKG	2 cut(s)	383, 480
MspI	CCGG	4 cut(s)	468, 566, 751, 758
MspR9I	CCNGG	1 cut(s)	566
Mva1269I	GAATGC	1 cut(s)	752
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	3 cut(s)	477, 483, 985
NaeI	GCCGGC	1 cut(s)	469
NciI	CCSGG	1 cut(s)	566
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	3 cut(s)	369, 634, 657
NgoMIV	GCCGGC	1 cut(s)	467
NlaIII	CATG	9 cut(s)	13, 123, 208, 254, 311, 646, 731, 802, 880
NlaIV	GGNNCC	2 cut(s)	529, 873
NspI	RCATGY	3 cut(s)	123, 208, 802
PaeI	GCATGC	2 cut(s)	123, 208
PcsI	WCGNNNNNNNCGW	2 cut(s)	146, 149
PctI	GAATGC	1 cut(s)	752
PdiI	GCCGGC	1 cut(s)	469
PflMI	CCANNNNNTGG	1 cut(s)	949
PkrI	GCNGC	7 cut(s)	106, 125, 128, 220, 243, 385, 479
PleI	GAGTC	1 cut(s)	456
PpsI	GAGTC	1 cut(s)	456
Ppu21I	YACGTR	1 cut(s)	840
PspEI	GGTNACC	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	529, 873
PspPI	GGNCC	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
RseI	CAYNNNNRTG	1 cut(s)	647
SacII	CCGCGG	1 cut(s)	481
SaqAI	TTAA	3 cut(s)	536, 723, 999
SatI	GCNGC	7 cut(s)	105, 124, 127, 219, 242, 384, 478
Sau3AI	GATC	3 cut(s)	369, 634, 657
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	1 cut(s)	566
SduI	GDGCHC	2 cut(s)	712, 876
Sfr303I	CCGCGG	1 cut(s)	481
SgrBI	CCGCGG	1 cut(s)	481
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	647
SnaBI	TACGTA	1 cut(s)	840
SphI	GCATGC	2 cut(s)	123, 208
Sse9I	AATT	3 cut(s)	96, 522, 1001
SsiI	CCGC	6 cut(s)	21, 179, 478, 480, 602, 647
SspMI	CTAG	4 cut(s)	458, 503, 803, 867
StyD4I	CCNGG	1 cut(s)	564
StyI	CCWWGG	1 cut(s)	250
TaiI	ACGT	2 cut(s)	842, 997
TaqI	TCGA	1 cut(s)	35
TasI	AATT	3 cut(s)	96, 522, 1001
TauI	GCSGC	1 cut(s)	480
Tru1I	TTAA	3 cut(s)	536, 723, 999
Tru9I	TTAA	3 cut(s)	536, 723, 999
TscAI	CASTG	2 cut(s)	240, 612
TseI	GCWGC	6 cut(s)	104, 123, 126, 218, 241, 383
TspDTI	ATGAA	4 cut(s)	304, 483, 618, 901
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	2 cut(s)	240, 612
Van91I	CCANNNNNTGG	1 cut(s)	949
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	1001
XceI	RCATGY	3 cut(s)	123, 208, 802
XspI	CTAG	4 cut(s)	458, 503, 803, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.