Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011927

Physical Location & Seq

Genomic Coordinates Forward (+)

13020942 .. 13025496

Gene Structure 4555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGCATGAGCGTTTAAAGAGGCTTAAAAGGACTTTAGTTGATCCCATAGGCAGCCTTGTCCGAGTGCATCCATGTATGCAATGTACAAGAGTCCAACTTCAGTGTCAAAATATCTGGGAACTGAACCCCTTATCTGCGCACAAAAAGTTAGATGCTCTCTCAATGACAGCCATGTCCTCCTCCACTTCTTCTTCTTCGTTTGCCATCTCTGGTACAAATGTTTTTGAGATGGGAAAATACAAAGTTGTCTTCCAGAGAGTTGAAGCAGCAGAGAGGAGTGGATGCAGCAGCAAAACCAAGTCGTCGTCGTCGTCGTCAACTTCTCCTCCTGCTAACCCACCGCCTCCGAAACCACTATTGATTGGCATGCCTTGTGAAGCTGCTGGAGAGTTCCCAGTGTTGCTGCTCCTCCATGGTTATCTTCTCTCCAACTCTTTCTACTCTCAGCTTATCAACCACATCGCTTCTCATGGCTTCATTGTCATTGCCCCTCAGTTATATACCATAGCTGGACCAGACACAACTGATGAGATCAAGTCCACGGCTGCAATAACAAACTGGTTATCTAATGGACTTCAACCCTTGCTTCCACCCAATGTTCATGCAAATTTAAGCAAGCTAGCACTCGCCGGCCATAGCCGCGGAGGCAAGGTTTCATTTGCACTAGCTTTAGGGAAAGAAGAAACTGGCACCAGCTTAAAGTTTTCAGCCTTGATAGGCATTGACCCAGTTGACGGAATGGACAAGGGGAAACAAACTCCTCCGCCAGTGCTAACCTATGTTCCTCATTCATTTGATCTTGACATGGCAGTGATGGTGATTGGTTCGGGTTTGGGTGAAGTGAAAAAGAACCCTCTATTCCCTCCTTGTGCTCCAAAGGGTGTTAACCATGAGGACTTCTTCAACGAATGCCGGAAATTGGCTTGTTATTTTGTGGCAAAGGATTATGGCCATCTTGACATGCTAGATGATGAGACCAAAGGGATTAGAGGGAAAGCTACGTATTGTTTGTGCAAAAATGGGAAGTCTAGGGAGCCCATGAGGAGGTTTGTTGGAGGGGTTGTGGTTGCTTTCATAAAAGCTTATTTAGAAGGTGATAGTAGCCACCTATTGGCTATAAGAGAAGGGGTTGAGACTTTGCCCATAGAGCTTCAATGTGTTAAATTTCTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0051186 GO:0051187 GO:0052689 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

392

Amino Acids

42.41

Weight (kDa)

8.77

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43860
fragaria_vesca	FvH4_4g00030 FvH4_4g01061 FvH4_4g01061
malus_domestica	MD13G1198800.v1.1 MD16G1199000.v1.1
prunus_persica	Prupe.1G020600_v2.0.a1
pyrus_communis	pycom13g17260 pycom16g16760
rosa_laevigata	RLG00000010105
rosa_multiflora	Rmu_sc0003953.1_g000005 Rmu_sc0012183.1_g000004
rosa_roxburghii	Rroxscaffold_5G00334310
rosa_rugosa	Rorug03G0311700
rosa_samantha	Rh4AG017300 Rh4BG012100 Rh4CG018500 Rh4DG013100
rosa_wichuraiana	Rw4G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	172
Acc16I	TGCGCA	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	689
AccB7I	CCANNNNNTGG	1 cut(s)	1111
AccII	CGCG	1 cut(s)	642
AciI	CCGC	4 cut(s)	341, 640, 642, 764
AclWI	GGATC	1 cut(s)	35
AcoI	YGGCCR	2 cut(s)	631, 949
AcsI	RAATTY	2 cut(s)	607, 1163
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	2 cut(s)	85, 214
AfiI	CCNNNNNNNGG	4 cut(s)	734, 919, 1044, 1111
AgsI	TTSAA	4 cut(s)	263, 578, 904, 1154
AluBI	AGCT	9 cut(s)	380, 448, 509, 619, 668, 696, 998, 1082, 1150
AluI	AGCT	9 cut(s)	380, 448, 509, 619, 668, 696, 998, 1082, 1150
Alw21I	GWGCWC	1 cut(s)	874
Alw26I	GTCTC	2 cut(s)	968, 1127
AlwI	GGATC	1 cut(s)	35
AoxI	GGCC	2 cut(s)	631, 949
ApeKI	GCWGC	7 cut(s)	51, 266, 285, 288, 380, 403, 545
ApoI	RAATTY	2 cut(s)	607, 1163
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	512
AsuHPI	GGTGA	3 cut(s)	829, 848, 1106
AsuNHI	GCTAGC	1 cut(s)	619
AvaII	GGWCC	1 cut(s)	512
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BalI	TGGCCA	1 cut(s)	951
BanI	GGYRCC	1 cut(s)	689
BanII	GRGCYC	1 cut(s)	1038
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	874
BbvI	GCAGC	7 cut(s)	63, 278, 297, 300, 367, 390, 532
BccI	CCATC	4 cut(s)	212, 223, 808, 960
BceAI	ACGGC	1 cut(s)	558
BcoDI	GTCTC	2 cut(s)	968, 1127
BfaI	CTAG	4 cut(s)	620, 665, 965, 1029
BglI	GCCNNNNNGGC	1 cut(s)	645
BisI	GCNGC	8 cut(s)	52, 267, 286, 289, 381, 404, 546, 640
BlsI	GCNGC	8 cut(s)	53, 268, 287, 290, 382, 405, 547, 641
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	512
BmiI	GGNNCC	2 cut(s)	691, 1035
BmrI	ACTGGG	2 cut(s)	389, 722
BmsI	GCATC	3 cut(s)	76, 142, 272
BmtI	GCTAGC	1 cut(s)	623
BmuI	ACTGGG	2 cut(s)	389, 722
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	405
BsaAI	YACGTR	1 cut(s)	1002
BsaI	GGTCTC	1 cut(s)	968
BsaJI	CCNNGG	3 cut(s)	412, 540, 640
BsaXI	ACNNNNNCTCC	6 cut(s)	310, 340, 636, 666, 1047, 1077
Bsc4I	CCNNNNNNNGG	4 cut(s)	734, 919, 1044, 1111
Bse118I	RCCGGY	1 cut(s)	629
Bse1I	ACTGG	5 cut(s)	395, 563, 691, 728, 767
Bse3DI	GCAATG	2 cut(s)	86, 483
BseDI	CCNNGG	3 cut(s)	412, 540, 640
BseGI	GGATG	2 cut(s)	67, 287
BseLI	CCNNNNNNNGG	4 cut(s)	734, 919, 1044, 1111
BseMI	GCAATG	2 cut(s)	86, 483
BseMII	CTCAG	2 cut(s)	458, 506
BseNI	ACTGG	5 cut(s)	395, 563, 691, 728, 767
BseRI	GAGGAG	6 cut(s)	169, 289, 315, 398, 750, 1057
BseXI	GCAGC	7 cut(s)	63, 278, 297, 300, 367, 390, 532
Bsh1236I	CGCG	1 cut(s)	642
BshFI	GGCC	2 cut(s)	633, 951
BshNI	GGYRCC	1 cut(s)	689
BsiHKAI	GWGCWC	1 cut(s)	874
BsiSI	CCGG	2 cut(s)	630, 913
BslI	CCNNNNNNNGG	4 cut(s)	734, 919, 1044, 1111
BsmAI	GTCTC	2 cut(s)	968, 1127
BsmI	GAATGC	1 cut(s)	914
BsnI	GGCC	2 cut(s)	633, 951
Bso31I	GGTCTC	1 cut(s)	968
Bsp1286I	GDGCHC	2 cut(s)	874, 1038
Bsp1407I	TGTACA	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	40, 531, 796
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	4 cut(s)	341, 640, 642, 764
BspANI	GGCC	2 cut(s)	633, 951
BspCNI	CTCAG	2 cut(s)	457, 505
BspFNI	CGCG	1 cut(s)	642
BspLI	GGNNCC	2 cut(s)	691, 1035
BspOI	GCTAGC	1 cut(s)	623
BspPI	GGATC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	689
BspTNI	GGTCTC	1 cut(s)	968
BsrDI	GCAATG	2 cut(s)	86, 483
BsrFI	RCCGGY	1 cut(s)	629
BsrGI	TGTACA	1 cut(s)	83
BsrI	ACTGG	5 cut(s)	395, 563, 691, 728, 767
BssAI	RCCGGY	1 cut(s)	629
BssECI	CCNNGG	3 cut(s)	412, 540, 640
BssMI	GATC	3 cut(s)	40, 531, 796
BssT1I	CCWWGG	1 cut(s)	412
BstAUI	TGTACA	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	1002
BstC8I	GCNNGC	4 cut(s)	368, 617, 621, 631
BstDEI	CTNAG	2 cut(s)	444, 492
BstDSI	CCRYGG	3 cut(s)	412, 540, 640
BstF5I	GGATG	2 cut(s)	67, 287
BstFNI	CGCG	1 cut(s)	642
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	3 cut(s)	43, 534, 799
BstMAI	GTCTC	2 cut(s)	968, 1127
BstMBI	GATC	3 cut(s)	40, 531, 796
BstMWI	GCNNNNNNNGC	3 cut(s)	639, 645, 1147
BstNSI	RCATGY	2 cut(s)	370, 964
BstSNI	TACGTA	1 cut(s)	1002
BstUI	CGCG	1 cut(s)	642
BstV1I	GCAGC	7 cut(s)	63, 278, 297, 300, 367, 390, 532
BstV2I	GAAGAC	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	633, 951
BtgI	CCRYGG	3 cut(s)	412, 540, 640
BtgZI	GCGATG	1 cut(s)	445
BtsCI	GGATG	2 cut(s)	67, 287
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	4 cut(s)	107, 402, 774, 816
Cac8I	GCNNGC	4 cut(s)	368, 617, 621, 631
CfoI	GCGC	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	629
Cfr13I	GGNCC	1 cut(s)	512
Cfr42I	CCGCGG	1 cut(s)	643
Csp6I	GTAC	2 cut(s)	84, 213
CviQI	GTAC	2 cut(s)	84, 213
DdeI	CTNAG	2 cut(s)	444, 492
DpnI	GATC	3 cut(s)	42, 533, 798
DpnII	GATC	3 cut(s)	40, 531, 796
DraI	TTTAAA	1 cut(s)	15
DrdI	GACNNNNNNGTC	1 cut(s)	172
DseDI	GACNNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	2 cut(s)	631, 949
EciI	GGCGGA	1 cut(s)	753
Eco105I	TACGTA	1 cut(s)	1002
Eco130I	CCWWGG	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	1038
Eco31I	GGTCTC	1 cut(s)	968
Eco47I	GGWCC	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	1038
ErhI	CCWWGG	1 cut(s)	412
Fnu4HI	GCNGC	8 cut(s)	52, 267, 286, 289, 381, 404, 546, 640
FokI	GGATG	2 cut(s)	54, 294
FriOI	GRGCYC	1 cut(s)	1038
Fsp4HI	GCNGC	8 cut(s)	52, 267, 286, 289, 381, 404, 546, 640
FspBI	CTAG	4 cut(s)	620, 665, 965, 1029
FspI	TGCGCA	1 cut(s)	138
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	8 cut(s)	52, 267, 286, 289, 381, 404, 546, 640
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	633, 951
HapII	CCGG	2 cut(s)	630, 913
HhaI	GCGC	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	3 cut(s)	318, 733, 886
HindII	GTYRAC	3 cut(s)	318, 733, 886
HindIII	AAGCTT	1 cut(s)	1080
HinfI	GANTC	1 cut(s)	90
HpaI	GTTAAC	1 cut(s)	886
HpaII	CCGG	2 cut(s)	630, 913
HphI	GGTGA	3 cut(s)	829, 848, 1106
Hpy166II	GTNNAC	4 cut(s)	318, 540, 733, 886
Hpy188I	TCNGA	2 cut(s)	62, 348
Hpy188III	TCNNGA	3 cut(s)	253, 800, 956
Hpy8I	GTNNAC	4 cut(s)	318, 540, 733, 886
Hpy99I	CGWCG	4 cut(s)	307, 310, 313, 316
HpyAV	CCTTC	2 cut(s)	1085, 1118
HpyCH4IV	ACGT	1 cut(s)	1001
HpyCH4V	TGCA	8 cut(s)	4, 67, 79, 285, 548, 605, 662, 1014
HpyF10VI	GCNNNNNNNGC	3 cut(s)	639, 645, 1147
HpyF3I	CTNAG	2 cut(s)	444, 492
HpySE526I	ACGT	1 cut(s)	1001
HspAI	GCGC	1 cut(s)	137
KroI	GCCGGC	1 cut(s)	629
KroNI	GCCGGC	1 cut(s)	631
KspAI	GTTAAC	1 cut(s)	886
KspI	CCGCGG	1 cut(s)	643
Kzo9I	GATC	3 cut(s)	40, 531, 796
LmnI	GCTCC	3 cut(s)	411, 877, 1033
Lsp1109I	GCAGC	7 cut(s)	63, 278, 297, 300, 367, 390, 532
LweI	GCATC	3 cut(s)	76, 142, 272
MaeI	CTAG	4 cut(s)	620, 665, 965, 1029
MaeII	ACGT	1 cut(s)	1001
MalI	GATC	3 cut(s)	42, 533, 798
MboI	GATC	3 cut(s)	40, 531, 796
MboII	GAAGA	7 cut(s)	180, 183, 186, 241, 413, 692, 892
MhlI	GDGCHC	2 cut(s)	874, 1038
MlsI	TGGCCA	1 cut(s)	951
MluCI	AATT	3 cut(s)	607, 917, 1163
MluNI	TGGCCA	1 cut(s)	951
MlyI	GAGTC	1 cut(s)	99
MmeI	TCCRAC	3 cut(s)	118, 453, 1033
Mox20I	TGGCCA	1 cut(s)	951
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	629
MscI	TGGCCA	1 cut(s)	951
MseI	TTAA	6 cut(s)	14, 24, 611, 698, 885, 1161
MslI	CAYNNNNRTG	1 cut(s)	809
Msp20I	TGGCCA	1 cut(s)	951
MspA1I	CMGCKG	1 cut(s)	642
MspI	CCGG	2 cut(s)	630, 913
Mva1269I	GAATGC	1 cut(s)	914
MvnI	CGCG	1 cut(s)	642
MwoI	GCNNNNNNNGC	3 cut(s)	639, 645, 1147
NaeI	GCCGGC	1 cut(s)	631
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	3 cut(s)	40, 531, 796
NgoMIV	GCCGGC	1 cut(s)	629
NheI	GCTAGC	1 cut(s)	619
NlaIV	GGNNCC	2 cut(s)	691, 1035
NsbI	TGCGCA	1 cut(s)	138
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	370, 964
PaeI	GCATGC	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	2 cut(s)	308, 311
PctI	GAATGC	1 cut(s)	914
PdiI	GCCGGC	1 cut(s)	631
PflMI	CCANNNNNTGG	1 cut(s)	1111
PkrI	GCNGC	8 cut(s)	53, 268, 287, 290, 382, 405, 547, 641
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	1002
PspN4I	GGNNCC	2 cut(s)	691, 1035
PspPI	GGNCC	1 cut(s)	512
RsaI	GTAC	2 cut(s)	85, 214
RsaNI	GTAC	2 cut(s)	84, 213
RseI	CAYNNNNRTG	1 cut(s)	809
SacII	CCGCGG	1 cut(s)	643
SaqAI	TTAA	6 cut(s)	14, 24, 611, 698, 885, 1161
SatI	GCNGC	8 cut(s)	52, 267, 286, 289, 381, 404, 546, 640
Sau3AI	GATC	3 cut(s)	40, 531, 796
Sau96I	GGNCC	1 cut(s)	512
SchI	GAGTC	1 cut(s)	99
SduI	GDGCHC	2 cut(s)	874, 1038
SfaNI	GCATC	3 cut(s)	76, 142, 272
Sfr303I	CCGCGG	1 cut(s)	643
SgrBI	CCGCGG	1 cut(s)	643
SinI	GGWCC	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	809
SnaBI	TACGTA	1 cut(s)	1002
SphI	GCATGC	1 cut(s)	370
Sse9I	AATT	3 cut(s)	607, 917, 1163
SsiI	CCGC	4 cut(s)	341, 640, 642, 764
SspMI	CTAG	4 cut(s)	620, 665, 965, 1029
StyI	CCWWGG	1 cut(s)	412
TaiI	ACGT	1 cut(s)	1004
TasI	AATT	3 cut(s)	607, 917, 1163
TatI	WGTACW	1 cut(s)	83
TauI	GCSGC	1 cut(s)	642
Tru1I	TTAA	6 cut(s)	14, 24, 611, 698, 885, 1161
Tru9I	TTAA	6 cut(s)	14, 24, 611, 698, 885, 1161
TscAI	CASTG	4 cut(s)	107, 402, 774, 816
TseI	GCWGC	7 cut(s)	51, 266, 285, 288, 380, 403, 545
TspDTI	ATGAA	5 cut(s)	466, 590, 645, 780, 1063
TspGWI	ACGGA	1 cut(s)	750
TspRI	CASTG	4 cut(s)	107, 402, 774, 816
Van91I	CCANNNNNTGG	1 cut(s)	1111
VpaK11BI	GGWCC	1 cut(s)	512
XapI	RAATTY	2 cut(s)	607, 1163
XceI	RCATGY	2 cut(s)	370, 964
XspI	CTAG	4 cut(s)	620, 665, 965, 1029
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.