Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011927

Physical Location & Seq

Genomic Coordinates Reverse (-)

23886 .. 24185

Gene Structure 300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGTTGTAAACCATGAGGACTTCTTCAACGAATGTCGAAAACCGGCTTGTTACTTTGTGGCCAAGGACTATGGGCATGTTGATATGCTTGATGATGAGACAAAGGGGGTTAGGGGGAAGGCTACATATTGTTTGTGCAAAAAAGACAAGTCTAGGGAACCCATGAGAAAATTTGTTGGAGTTGTGGTTGCTTTCATCAAAGCCTATTTGGGAGGGGAAATGAGTGAACTAATGGCTATAAGAGAAGGAGGGCATGAAGCTGCACCAATTGAGCTTCAAAGTGTTGAATTCCTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0051186 GO:0051187 GO:0052689 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

100

Amino Acids

11.21

Weight (kDa)

5.9

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	3 - 97	1.1e-35	Chlorophyllase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43860
fragaria_vesca	FvH4_4g00030 FvH4_4g01061 FvH4_4g01061
malus_domestica	MD13G1198800.v1.1 MD16G1199000.v1.1
prunus_persica	Prupe.1G020600_v2.0.a1
pyrus_communis	pycom13g17260 pycom16g16760
rosa_laevigata	RLG00000010105
rosa_multiflora	Rmu_sc0003953.1_g000005 Rmu_sc0012183.1_g000004
rosa_roxburghii	Rroxscaffold_5G00334310
rosa_rugosa	Rorug03G0311700
rosa_samantha	Rh4AG017300 Rh4BG012100 Rh4CG018500 Rh4DG013100
rosa_wichuraiana	Rw4G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	170, 287
AgsI	TTSAA	3 cut(s)	28, 278, 287
AluBI	AGCT	2 cut(s)	260, 274
AluI	AGCT	2 cut(s)	260, 274
Alw26I	GTCTC	1 cut(s)	92
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	2 cut(s)	170, 287
BalI	TGGCCA	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	153
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bse118I	RCCGGY	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	62
Cfr10I	RCCGGY	1 cut(s)	43
CviAII	CATG	4 cut(s)	14, 77, 163, 254
CviJI	RGCY	7 cut(s)	47, 62, 122, 203, 236, 260, 274
CviKI_1	RGCY	7 cut(s)	47, 62, 122, 203, 236, 260, 274
EaeI	YGGCCR	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	4 cut(s)	17, 80, 166, 257
FaiI	YATR	8 cut(s)	15, 72, 78, 86, 127, 164, 239, 255
FatI	CATG	4 cut(s)	13, 76, 162, 253
Fnu4HI	GCNGC	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	4 cut(s)	17, 80, 166, 257
HpaII	CCGG	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	10, 227
Hpy8I	GTNNAC	2 cut(s)	10, 227
HpyAV	CCTTC	2 cut(s)	112, 239
HpyCH4V	TGCA	2 cut(s)	138, 263
Hsp92II	CATG	4 cut(s)	17, 80, 166, 257
LpnPI	CCDG	1 cut(s)	57
Lsp1109I	GCAGC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	50
MboII	GAAGA	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	267
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	3 cut(s)	170, 267, 287
MluNI	TGGCCA	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	3 cut(s)	10, 206, 242
Mox20I	TGGCCA	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	62
Msp20I	TGGCCA	1 cut(s)	62
MspI	CCGG	1 cut(s)	44
MunI	CAATTG	1 cut(s)	267
NlaIII	CATG	4 cut(s)	17, 80, 166, 257
NlaIV	GGNNCC	1 cut(s)	159
NspI	RCATGY	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	159
SatI	GCNGC	1 cut(s)	261
SetI	ASST	2 cut(s)	262, 276
Sse9I	AATT	3 cut(s)	170, 267, 287
SspMI	CTAG	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	63
TaqI	TCGA	1 cut(s)	37
TasI	AATT	3 cut(s)	170, 267, 287
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	184, 270
XapI	RAATTY	2 cut(s)	170, 287
XceI	RCATGY	1 cut(s)	80
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.