Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008430

Physical Location & Seq

Genomic Coordinates Forward (+)

18524889 .. 18527040

Gene Structure 2152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCCGGGATTAAAACTTCTCCGGCGACGATTAAGCTCTTCACCGTTCTATTCCTCATTCTCACAATCTCATCTCCATCACCCAAATTCGTAAACGCCTTCACTTTCCCATTTTCCTTCACACAATACAAAACCCTAATCTCAATCTCACGATCACTCCTCCTCCGCGTCGCAAACCTACGCGCTTCACGTGGAGACGCATTGGGTTCGTCTCGTGTACGAGCAATGGCTGATGAAATCGATCGTGGATTAGGGTTAGGGTTTATAAGCAGAGCTTGGTCTGTTGGTTGGGATTATATGTGGAATTACGCTTGGAGAAAGGGAGGGATTGACTACGGTGAGATGTATGGTGCGATTGGTGATCTCAATGAGCTTATGGGTTTAGTGACTGAGTTTAATAGAGCTGAATCTAATGCTGATAAAGCTAGCTCTGTTGCTCGGAGTTATGGCAAAGCTCTTCGTGTTTCGAACAAATTGCTTCGTCGTCTTCTTAGAATCTTTGCTAAATCGGGTGCATTGAGGGAGTTTTGGGAGATGGTGCAAGCTGAAGTAGTCGATGGAGAGTTACTACAAGACTGTCTCGAAGTAGGCGGAAACGACGTTAAGAGTTTGCTTCAAATAGCAAAGGACATGGCTGTACAGTTTTTTTCTTCTCAAAGCCGTTCCTCTGATGAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

25.11

Weight (kDa)

9.38

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45660
fragaria_vesca	FvH4_3g06600 FvH4_3g06600 FvH4_3g06600 FvH4_3g06600 FvH4_3g06600 FvH4_4g34020
malus_domestica	MD00G1093500.v1.1 MD10G1270500.v1.1
prunus_persica	Prupe.4G071300_v2.0.a1
pyrus_communis	pycom05g27050
rosa_chinensis	RchiOBHm_Chr5g0012541
rosa_laevigata	RLG00000031923
rosa_multiflora	Rmu_co8311175.1_g000001 Rmu_sc0001889.1_g000035 Rmu_sc0023128.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064150
rosa_rugosa	Rorug05G0002300
rosa_samantha	Rh5AG096300 Rh5BG092500 Rh5CG105400 Rh5DG092000
rosa_wichuraiana	Rw5G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	266
AccII	CGCG	2 cut(s)	168, 183
AciI	CCGC	2 cut(s)	166, 591
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	567
AcvI	CACGTG	1 cut(s)	191
AfaI	GTAC	2 cut(s)	219, 639
AgsI	TTSAA	1 cut(s)	617
AluBI	AGCT	8 cut(s)	37, 275, 373, 404, 425, 429, 455, 545
AluI	AGCT	8 cut(s)	37, 275, 373, 404, 425, 429, 455, 545
Alw26I	GTCTC	3 cut(s)	189, 216, 584
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	7
AsuHPI	GGTGA	4 cut(s)	34, 72, 350, 371
AsuII	TTCGAA	1 cut(s)	467
AsuNHI	GCTAGC	1 cut(s)	425
BauI	CACGAG	1 cut(s)	213
BbrPI	CACGTG	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	479
BccI	CCATC	3 cut(s)	85, 529, 551
BceAI	ACGGC	1 cut(s)	645
BcgI	CGANNNNNNTGC	4 cut(s)	189, 223, 457, 491
BcnI	CCSGG	1 cut(s)	7
BcoDI	GTCTC	3 cut(s)	189, 216, 584
BfaI	CTAG	1 cut(s)	426
Bme1390I	CCNGG	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	7
BmtI	GCTAGC	1 cut(s)	429
BpiI	GAAGAC	1 cut(s)	479
Bpu14I	TTCGAA	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	7
Bsa29I	ATCGAT	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	191
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 147, 171, 177
Bse3DI	GCAATG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	381
BseRI	GAGGAG	2 cut(s)	149, 152
Bsh1236I	CGCG	2 cut(s)	168, 183
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	6, 23
BsmAI	GTCTC	3 cut(s)	189, 216, 584
BsmBI	CGTCTC	2 cut(s)	189, 216
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	467
Bsp1407I	TGTACA	1 cut(s)	637
Bsp143I	GATC	3 cut(s)	152, 241, 361
BspACI	CCGC	2 cut(s)	166, 591
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	382
BspDI	ATCGAT	1 cut(s)	240
BspFNI	CGCG	2 cut(s)	168, 183
BspOI	GCTAGC	1 cut(s)	429
BspQI	GCTCTTC	2 cut(s)	44, 462
BspT104I	TTCGAA	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	231
BsrGI	TGTACA	1 cut(s)	637
BssMI	GATC	3 cut(s)	152, 241, 361
BssSI	CACGAG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	213
Bst4CI	ACNGT	4 cut(s)	46, 338, 578, 642
Bst6I	CTCTTC	2 cut(s)	44, 462
BstAUI	TGTACA	1 cut(s)	637
BstBAI	YACGTR	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	427, 543
BstDEI	CTNAG	2 cut(s)	390, 491
BstFNI	CGCG	2 cut(s)	168, 183
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	3 cut(s)	155, 244, 364
BstMAI	GTCTC	3 cut(s)	189, 216, 584
BstMBI	GATC	3 cut(s)	152, 241, 361
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	5
BstUI	CGCG	2 cut(s)	168, 183
BstV2I	GAAGAC	1 cut(s)	479
Bsu15I	ATCGAT	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	427, 543
CfoI	GCGC	1 cut(s)	185
ClaI	ATCGAT	1 cut(s)	240
CseI	GACGC	2 cut(s)	157, 206
Csp6I	GTAC	2 cut(s)	218, 638
CviAII	CATG	1 cut(s)	631
CviQI	GTAC	2 cut(s)	218, 638
DdeI	CTNAG	2 cut(s)	390, 491
DpnI	GATC	3 cut(s)	154, 243, 363
DpnII	GATC	3 cut(s)	152, 241, 361
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	44, 462
EarI	CTCTTC	2 cut(s)	44, 462
EciI	GGCGGA	1 cut(s)	606
Eco57I	CTGAAG	1 cut(s)	567
Eco72I	CACGTG	1 cut(s)	191
Esp3I	CGTCTC	2 cut(s)	189, 216
FaeI	CATG	1 cut(s)	634
FaiI	YATR	7 cut(s)	266, 297, 299, 348, 377, 447, 632
FalI	AAGNNNNNCTT	2 cut(s)	259, 291
FatI	CATG	1 cut(s)	630
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	6, 23
HgaI	GACGC	2 cut(s)	157, 206
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	1 cut(s)	634
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	2 cut(s)	407, 495
HpaII	CCGG	2 cut(s)	6, 23
HphI	GGTGA	4 cut(s)	34, 72, 350, 371
Hpy166II	GTNNAC	2 cut(s)	94, 218
Hpy188I	TCNGA	2 cut(s)	441, 670
Hpy188III	TCNNGA	2 cut(s)	150, 581
Hpy8I	GTNNAC	2 cut(s)	94, 218
Hpy99I	CGWCG	4 cut(s)	31, 173, 486, 602
HpyAV	CCTTC	2 cut(s)	109, 127
HpyCH4III	ACNGT	4 cut(s)	46, 338, 578, 642
HpyCH4IV	ACGT	2 cut(s)	190, 600
HpyCH4V	TGCA	2 cut(s)	515, 541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	2 cut(s)	390, 491
HpySE526I	ACGT	2 cut(s)	190, 600
Hsp92II	CATG	1 cut(s)	634
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	152, 241, 361
LguI	GCTCTTC	2 cut(s)	44, 462
LpnPI	CCDG	2 cut(s)	19, 36
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	2 cut(s)	190, 600
MaeIII	GTNAC	2 cut(s)	385, 564
MalI	GATC	3 cut(s)	154, 243, 363
MboI	GATC	3 cut(s)	152, 241, 361
MboII	GAAGA	4 cut(s)	31, 449, 479, 642
MluCI	AATT	3 cut(s)	86, 304, 473
MnlI	CCTC	6 cut(s)	65, 170, 173, 317, 513, 676
MseI	TTAA	4 cut(s)	12, 33, 396, 603
MspI	CCGG	2 cut(s)	6, 23
MspR9I	CCNGG	1 cut(s)	7
MvnI	CGCG	2 cut(s)	168, 183
MwoI	GCNNNNNNNGC	1 cut(s)	422
NciI	CCSGG	1 cut(s)	7
NdeII	GATC	3 cut(s)	152, 241, 361
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	1 cut(s)	634
NmuCI	GTSAC	1 cut(s)	385
NspV	TTCGAA	1 cut(s)	467
PciSI	GCTCTTC	2 cut(s)	44, 462
PcsI	WCGNNNNNNNCGW	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	407, 495
Ple19I	CGATCG	1 cut(s)	244
PmaCI	CACGTG	1 cut(s)	191
PmlI	CACGTG	1 cut(s)	191
Ppu21I	YACGTR	1 cut(s)	191
PsiI	TTATAA	1 cut(s)	266
PspCI	CACGTG	1 cut(s)	191
PvuI	CGATCG	1 cut(s)	244
RsaI	GTAC	2 cut(s)	219, 639
RsaNI	GTAC	2 cut(s)	218, 638
SapI	GCTCTTC	2 cut(s)	44, 462
SaqAI	TTAA	4 cut(s)	12, 33, 396, 603
Sau3AI	GATC	3 cut(s)	152, 241, 361
ScrFI	CCNGG	1 cut(s)	7
SfuI	TTCGAA	1 cut(s)	467
Sse9I	AATT	3 cut(s)	86, 304, 473
SsiI	CCGC	2 cut(s)	166, 591
SspMI	CTAG	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	5
TaaI	ACNGT	4 cut(s)	46, 338, 578, 642
TaiI	ACGT	2 cut(s)	193, 603
TaqI	TCGA	4 cut(s)	240, 467, 555, 582
TasI	AATT	3 cut(s)	86, 304, 473
TatI	WGTACW	1 cut(s)	637
TfiI	GAWTC	2 cut(s)	407, 495
Tru1I	TTAA	4 cut(s)	12, 33, 396, 603
Tru9I	TTAA	4 cut(s)	12, 33, 396, 603
TseFI	GTSAC	1 cut(s)	385
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	1 cut(s)	249
XapI	RAATTY	1 cut(s)	86
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.