Rh5DG092000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0008430
Physical Location & Seq
Reverse (-)
8396140 .. 8397146
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG092000.1

Sequence Viewer

Length: 516 bp
ATGACGCGCGTGGCCAACCTCCGCGCCTCCCGCGGCGACCACGCCGGTTCGGACCGGGCCAGGAACATCGCGGCGAAAATGGAGAGCGGGCTGGGCCTCGGCGTCTGGGGGTTCATGTGGTCGGCGGGGTGGGACTACGTCAAGAACTACTCGTGGAGGGAGCTGCCGTACACGGAGATGTACGGCGCCGCTTCGGAGGCGGGCGAGTTGATGAGGTGGCTGGGTGAGTTGACTCGGAAGGAATCGGACTCCGAGCGAGCGGCGTGGATCGGTCAGAATTACCAAAATGTCTTCAGGGTCTCTACTTCGCTGCTGCGTAGGCTCCTCCGAGTGTTCAGTCAGTCGGGAACGTTGAGAGAAGTGGTGAAGGCAGTTCAAAGAGAGGTAGTGGAGGGCGAGTTATTGAAGGACTGTCTTGAATTGGGCAGCAATGACTTTCAAGGTGTGCTTCAAATCCTCAAGGATTTGGGAGTACAATACGGCTCGGCTCCTAGTTCTAAGCACCAAGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.23

Weight (kDa)

7.85

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AccBSI CCGCTC 2 cut(s) 87, 260
AccII CGCG 5 cut(s) 7, 9, 24, 33, 71
AciI CCGC 9 cut(s) 22, 31, 33, 71, 87, 125, 189, 200, 260
AclI AACGTT 1 cut(s) 350
AclWI GGATC 1 cut(s) 275
AcoI YGGCCR 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 277
AcyI GRCGYC 2 cut(s) 102, 186
AfaI GTAC 3 cut(s) 170, 182, 474
AgsI TTSAA 5 cut(s) 377, 406, 419, 440, 452
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 1 cut(s) 275
AoxI GGCC 3 cut(s) 12, 57, 94
ApeKI GCWGC 4 cut(s) 163, 310, 313, 426
AspLEI GCGC 3 cut(s) 9, 26, 188
AspS9I GGNCC 3 cut(s) 52, 57, 94
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 236, 376
AvaII GGWCC 1 cut(s) 52
BalI TGGCCA 1 cut(s) 14
BanI GGYRCC 1 cut(s) 185
BauI CACGAG 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 283
BbvI GCAGC 4 cut(s) 150, 297, 300, 438
BceAI ACGGC 3 cut(s) 151, 199, 496
BciT130I CCWGG 1 cut(s) 61
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 1 cut(s) 492
BfoI RGCGCY 1 cut(s) 189
BglII AGATCT 1 cut(s) 508
BisI GCNGC 8 cut(s) 34, 72, 164, 189, 261, 311, 314, 427
BlsI GCNGC 8 cut(s) 35, 73, 165, 190, 262, 312, 315, 428
Bme1390I CCNGG 2 cut(s) 56, 61
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 3 cut(s) 52, 57, 94
BmiI GGNNCC 3 cut(s) 187, 323, 489
BmrFI CCNGG 2 cut(s) 56, 61
BpiI GAAGAC 1 cut(s) 283
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 56
BsaHI GRCGYC 2 cut(s) 102, 186
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 2 cut(s) 31, 97
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 383, 413
Bse118I RCCGGY 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 436
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 2 cut(s) 31, 97
BseMI GCAATG 1 cut(s) 436
BseRI GAGGAG 1 cut(s) 314
BseXI GCAGC 4 cut(s) 150, 297, 300, 438
BseYI CCCAGC 2 cut(s) 91, 220
Bsh1236I CGCG 5 cut(s) 7, 9, 24, 33, 71
BshFI GGCC 3 cut(s) 14, 59, 96
BshNI GGYRCC 1 cut(s) 185
BsiSI CCGG 2 cut(s) 45, 55
BslFI GGGAC 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 3 cut(s) 14, 59, 96
Bso31I GGTCTC 1 cut(s) 304
Bsp143I GATC 2 cut(s) 267, 508
BspACI CCGC 9 cut(s) 22, 31, 33, 71, 87, 125, 189, 200, 260
BspANI GGCC 3 cut(s) 14, 59, 96
BspFNI CGCG 5 cut(s) 7, 9, 24, 33, 71
BspLI GGNNCC 3 cut(s) 187, 323, 489
BspPI GGATC 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 304
BsrBI CCGCTC 2 cut(s) 87, 260
BsrDI GCAATG 1 cut(s) 436
BsrFI RCCGGY 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 31, 97
BssMI GATC 2 cut(s) 267, 508
BssNI GRCGYC 2 cut(s) 102, 186
BssSI CACGAG 1 cut(s) 151
Bst2BI CACGAG 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 413
BstACI GRCGYC 2 cut(s) 102, 186
BstC8I GCNNGC 3 cut(s) 89, 202, 258
BstDEI CTNAG 1 cut(s) 498
BstDSI CCRYGG 1 cut(s) 31
BstFNI CGCG 5 cut(s) 7, 9, 24, 33, 71
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 3 cut(s) 9, 26, 188
BstKTI GATC 2 cut(s) 270, 511
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 2 cut(s) 267, 508
BstMWI GCNNNNNNNGC 4 cut(s) 30, 93, 197, 319
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 2 cut(s) 54, 59
BstUI CGCG 5 cut(s) 7, 9, 24, 33, 71
BstV1I GCAGC 4 cut(s) 150, 297, 300, 438
BstV2I GAAGAC 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
BsuRI GGCC 3 cut(s) 14, 59, 96
BtgI CCRYGG 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 52
Cac8I GCNNGC 3 cut(s) 89, 202, 258
CfoI GCGC 3 cut(s) 9, 26, 188
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 3 cut(s) 52, 57, 94
Cfr42I CCGCGG 1 cut(s) 34
CpoI CGGWCCG 1 cut(s) 52
CseI GACGC 2 cut(s) 13, 91
Csp6I GTAC 3 cut(s) 169, 181, 473
CspI CGGWCCG 1 cut(s) 52
CviAII CATG 1 cut(s) 115
CviJI RGCY 9 cut(s) 14, 59, 91, 96, 163, 220, 322, 483, 488
CviKI_1 RGCY 9 cut(s) 14, 59, 91, 96, 163, 220, 322, 483, 488
CviQI GTAC 3 cut(s) 169, 181, 473
DdeI CTNAG 1 cut(s) 498
DinI GGCGCC 1 cut(s) 187
DpnI GATC 2 cut(s) 269, 510
DpnII GATC 2 cut(s) 267, 508
EaeI YGGCCR 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 59
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
FaeI CATG 1 cut(s) 118
FaiI YATR 1 cut(s) 116
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 1 cut(s) 146
FatI CATG 1 cut(s) 114
FauI CCCGC 4 cut(s) 38, 80, 118, 193
Fnu4HI GCNGC 8 cut(s) 34, 72, 164, 189, 261, 311, 314, 427
Fsp4HI GCNGC 8 cut(s) 34, 72, 164, 189, 261, 311, 314, 427
FspBI CTAG 1 cut(s) 492
GlaI GCGC 3 cut(s) 8, 25, 187
GluI GCNGC 8 cut(s) 34, 72, 164, 189, 261, 311, 314, 427
GsaI CCCAGC 2 cut(s) 95, 224
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 3 cut(s) 14, 59, 96
HapII CCGG 2 cut(s) 45, 55
HgaI GACGC 2 cut(s) 13, 91
HhaI GCGC 3 cut(s) 9, 26, 188
Hin1I GRCGYC 2 cut(s) 102, 186
Hin1II CATG 1 cut(s) 118
Hin6I GCGC 3 cut(s) 7, 24, 186
HinP1I GCGC 3 cut(s) 7, 24, 186
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HinfI GANTC 3 cut(s) 232, 242, 248
HpaII CCGG 2 cut(s) 45, 55
HphI GGTGA 2 cut(s) 236, 376
Hpy166II GTNNAC 2 cut(s) 171, 231
Hpy188I TCNGA 7 cut(s) 52, 196, 237, 247, 253, 276, 329
Hpy188III TCNNGA 3 cut(s) 142, 345, 416
Hpy8I GTNNAC 2 cut(s) 171, 231
HpyAV CCTTC 3 cut(s) 232, 361, 400
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4IV ACGT 2 cut(s) 138, 350
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 93, 197, 319
HpyF3I CTNAG 1 cut(s) 498
HpySE526I ACGT 2 cut(s) 138, 350
Hsp92I GRCGYC 2 cut(s) 102, 186
Hsp92II CATG 1 cut(s) 118
HspAI GCGC 3 cut(s) 7, 24, 186
KasI GGCGCC 1 cut(s) 185
KspI CCGCGG 1 cut(s) 34
Kzo9I GATC 2 cut(s) 267, 508
LmnI GCTCC 3 cut(s) 160, 327, 493
LpnPI CCDG 8 cut(s) 46, 58, 68, 73, 77, 91, 206, 280
Lsp1109I GCAGC 4 cut(s) 150, 297, 300, 438
MaeI CTAG 1 cut(s) 492
MaeII ACGT 2 cut(s) 138, 350
MalI GATC 2 cut(s) 269, 510
MbiI CCGCTC 2 cut(s) 87, 260
MboI GATC 2 cut(s) 267, 508
MboII GAAGA 1 cut(s) 283
MflI RGATCY 1 cut(s) 508
MlsI TGGCCA 1 cut(s) 14
MluCI AATT 2 cut(s) 277, 419
MluNI TGGCCA 1 cut(s) 14
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 2 cut(s) 226, 242
Mox20I TGGCCA 1 cut(s) 14
MscI TGGCCA 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 2 cut(s) 45, 55
MspR9I CCNGG 2 cut(s) 56, 61
MvaI CCWGG 1 cut(s) 61
MvnI CGCG 5 cut(s) 7, 9, 24, 33, 71
MwoI GCNNNNNNNGC 4 cut(s) 30, 93, 197, 319
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 1 cut(s) 56
NdeII GATC 2 cut(s) 267, 508
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 3 cut(s) 187, 323, 489
NmeAIII GCCGAG 2 cut(s) 78, 464
PfeI GAWTC 1 cut(s) 242
PflFI GACNNNGTC 1 cut(s) 137
PkrI GCNGC 8 cut(s) 35, 73, 165, 190, 262, 312, 315, 428
PleI GAGTC 2 cut(s) 226, 242
PluTI GGCGCC 1 cut(s) 189
PpsI GAGTC 2 cut(s) 226, 242
Psp1406I AACGTT 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 59
PspFI CCCAGC 2 cut(s) 91, 220
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 3 cut(s) 187, 323, 489
PspPI GGNCC 3 cut(s) 52, 57, 94
PsuI RGATCY 1 cut(s) 508
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 3 cut(s) 170, 182, 474
RsaNI GTAC 3 cut(s) 169, 181, 473
RseI CAYNNNNRTG 1 cut(s) 176
Rsr2I CGGWCCG 1 cut(s) 52
RsrII CGGWCCG 1 cut(s) 52
SacII CCGCGG 1 cut(s) 34
SatI GCNGC 8 cut(s) 34, 72, 164, 189, 261, 311, 314, 427
Sau3AI GATC 2 cut(s) 267, 508
Sau96I GGNCC 3 cut(s) 52, 57, 94
SchI GAGTC 2 cut(s) 226, 242
ScrFI CCNGG 2 cut(s) 56, 61
SetI ASST 7 cut(s) 21, 141, 165, 218, 353, 387, 445
SfoI GGCGCC 1 cut(s) 187
Sfr303I CCGCGG 1 cut(s) 34
SgrBI CCGCGG 1 cut(s) 34
SinI GGWCC 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 2 cut(s) 277, 419
SsiI CCGC 9 cut(s) 22, 31, 33, 71, 87, 125, 189, 200, 260
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 1 cut(s) 492
StyD4I CCNGG 2 cut(s) 54, 59
TaaI ACNGT 1 cut(s) 413
TaiI ACGT 2 cut(s) 141, 353
TaqII GACCGA 1 cut(s) 260
TasI AATT 2 cut(s) 277, 419
TatI WGTACW 1 cut(s) 472
TauI GCSGC 4 cut(s) 36, 74, 191, 263
TfiI GAWTC 1 cut(s) 242
TseI GCWGC 4 cut(s) 163, 310, 313, 426
TspDTI ATGAA 1 cut(s) 103
TspGWI ACGGA 1 cut(s) 188
Tth111I GACNNNGTC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 52
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.