Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008430

Physical Location & Seq

Genomic Coordinates Forward (+)

28121369 .. 28122541

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAAACTAAACTTCTCGAACATTCTTAACCGTCGATCAATCATCAGTCCCTTACAGAGCTCCAAAATGGCCAAGACGACACCGTCGCACCAGACGCTTCTCTTCCTCACCGTTCTCCTCCTGACCACAGCACAGCCCTCCCAATCCTTCTCCTACTCTCAGTACCCAACCCTCTTCTCCCTCGCCCACTCGCTCATGACGCGGGTGGCCAACCTCCGGGAGGCACGCGGCGACGTTTCGGGATCGCAGGGGGCCAGGGCCATCGCGTCGAAGCTGGAGCGGGGGCTCGGGATGGGTGTGTGGGGGTTCACGTGGTCCGCCGGCTGGGACTATCTCAGGAACTACGCGTGGAGGGACTTTCCCTATTCGGAGGTATACGGCGCCGTTGCGGACGCCAACGAGTTGCTGAGGTGGCTGGGTGACTTGACACAGAGGCAATCGGATTCCGATCGAGCCGTTTGGGTCGCGCAGAATTACCAAACTATCCTCAAGGTTTCCAATTCGCTGCTCCGTCGGCTCCTCAAAGTGTTCTACCACTCGGGAACGTTGAGAGAAATGGTGAAGACAGTGCAGAGAGAGGTGGTGGAGGGTGAGCTATTAAGGGATTGTCTTGAATTGGGCTCCAATGATTTGAACGGTGTGATTCAAATCCTCAAGGATTTGGAATCGCAAAACGGTTCCACCACCCACCAAGAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

26.31

Weight (kDa)

9.24

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45660
fragaria_vesca	FvH4_3g06600 FvH4_3g06600 FvH4_3g06600 FvH4_3g06600 FvH4_3g06600 FvH4_4g34020
malus_domestica	MD00G1093500.v1.1 MD10G1270500.v1.1
prunus_persica	Prupe.4G071300_v2.0.a1
pyrus_communis	pycom05g27050
rosa_chinensis	RchiOBHm_Chr5g0012541
rosa_laevigata	RLG00000031923
rosa_multiflora	Rmu_co8311175.1_g000001 Rmu_sc0001889.1_g000035 Rmu_sc0023128.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064150
rosa_rugosa	Rorug05G0002300
rosa_samantha	Rh5AG096300 Rh5BG092500 Rh5CG105400 Rh5DG092000
rosa_wichuraiana	Rw5G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	380
AccBSI	CCGCTC	1 cut(s)	280
AccI	GTMKAC	1 cut(s)	375
AccII	CGCG	5 cut(s)	202, 228, 266, 347, 467
AciI	CCGC	5 cut(s)	202, 228, 280, 318, 389
AclI	AACGTT	1 cut(s)	545
AclWI	GGATC	1 cut(s)	250
AcoI	YGGCCR	2 cut(s)	69, 207
AcvI	CACGTG	1 cut(s)	312
AcyI	GRCGYC	2 cut(s)	381, 393
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	3 cut(s)	216, 220, 324
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	614, 634, 647
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	3 cut(s)	60, 274, 595
AluI	AGCT	3 cut(s)	60, 274, 595
Alw21I	GWGCWC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	250
Ama87I	CYCGRG	2 cut(s)	287, 538
AoxI	GGCC	4 cut(s)	69, 207, 252, 258
ApeKI	GCWGC	1 cut(s)	505
AspLEI	GCGC	2 cut(s)	383, 469
AspS9I	GGNCC	3 cut(s)	252, 258, 315
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	4 cut(s)	100, 431, 571, 602
AvaI	CYCGRG	2 cut(s)	287, 538
AvaII	GGWCC	1 cut(s)	315
BalI	TGGCCA	2 cut(s)	71, 209
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	3 cut(s)	62, 288, 623
BbrPI	CACGTG	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	62
BbvCI	CCTCAGC	1 cut(s)	407
BbvI	GCAGC	1 cut(s)	492
BccI	CCATC	2 cut(s)	269, 286
BceAI	ACGGC	3 cut(s)	368, 394, 440
BciT130I	CCWGG	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	218
BfoI	RGCGCY	1 cut(s)	384
BisI	GCNGC	2 cut(s)	229, 506
BlsI	GCNGC	2 cut(s)	230, 507
Bme1390I	CCNGG	2 cut(s)	218, 256
Bme18I	GGWCC	1 cut(s)	315
BmeT110I	CYCGRG	2 cut(s)	287, 538
BmgT120I	GGNCC	3 cut(s)	252, 258, 315
BmiI	GGNNCC	5 cut(s)	253, 382, 518, 622, 679
BmrFI	CCNGG	2 cut(s)	218, 256
BpiI	GAAGAC	1 cut(s)	569
BpmI	CTGGAG	1 cut(s)	296
Bpu10I	CCTNAGC	1 cut(s)	407
BpuEI	CTTGAG	2 cut(s)	473, 638
BpuMI	CCSGG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	312
BsaBI	GATNNNNATC	2 cut(s)	447, 647
BsaHI	GRCGYC	2 cut(s)	381, 393
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 220, 324
Bse118I	RCCGGY	1 cut(s)	320
Bse8I	GATNNNNATC	2 cut(s)	447, 647
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	297
BseJI	GATNNNNATC	2 cut(s)	447, 647
BseLI	CCNNNNNNNGG	3 cut(s)	216, 220, 324
BseMII	CTCAG	3 cut(s)	173, 349, 398
BseRI	GAGGAG	2 cut(s)	107, 509
BseXI	GCAGC	1 cut(s)	492
BseYI	CCCAGC	2 cut(s)	324, 415
BsgI	GTGCAG	1 cut(s)	590
Bsh1236I	CGCG	5 cut(s)	202, 228, 266, 347, 467
Bsh1285I	CGRYCG	1 cut(s)	451
BshFI	GGCC	4 cut(s)	71, 209, 254, 260
BshNI	GGYRCC	1 cut(s)	380
BsiEI	CGRYCG	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	2 cut(s)	287, 538
BsiSI	CCGG	2 cut(s)	217, 321
BslFI	GGGAC	3 cut(s)	33, 341, 368
BslI	CCNNNNNNNGG	3 cut(s)	216, 220, 324
BsmFI	GGGAC	3 cut(s)	33, 341, 368
BsnI	GGCC	4 cut(s)	71, 209, 254, 260
BsoBI	CYCGRG	2 cut(s)	287, 538
Bsp1286I	GDGCHC	3 cut(s)	62, 288, 623
Bsp143I	GATC	3 cut(s)	35, 242, 448
BspACI	CCGC	5 cut(s)	202, 228, 280, 318, 389
BspANI	GGCC	4 cut(s)	71, 209, 254, 260
BspCNI	CTCAG	3 cut(s)	172, 348, 399
BspFNI	CGCG	5 cut(s)	202, 228, 266, 347, 467
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	5 cut(s)	253, 382, 518, 622, 679
BspPI	GGATC	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	380
BsrBI	CCGCTC	1 cut(s)	280
BsrFI	RCCGGY	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	3 cut(s)	35, 242, 448
BssNAI	GTATAC	1 cut(s)	376
BssNI	GRCGYC	2 cut(s)	381, 393
Bst1107I	GTATAC	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	6 cut(s)	32, 84, 112, 568, 638, 677
Bst6I	CTCTTC	2 cut(s)	107, 179
BstACI	GRCGYC	2 cut(s)	381, 393
BstBAI	YACGTR	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	226, 322
BstDEI	CTNAG	3 cut(s)	159, 335, 407
BstENI	CCTNNNNNAGG	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	297
BstFNI	CGCG	5 cut(s)	202, 228, 266, 347, 467
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	2 cut(s)	383, 469
BstKTI	GATC	3 cut(s)	38, 245, 451
BstMBI	GATC	3 cut(s)	35, 242, 448
BstMCI	CGRYCG	1 cut(s)	451
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 199, 412, 514
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	216, 254
BstUI	CGCG	5 cut(s)	202, 228, 266, 347, 467
BstV1I	GCAGC	1 cut(s)	492
BstV2I	GAAGAC	1 cut(s)	569
BstZ17I	GTATAC	1 cut(s)	376
BsuRI	GGCC	4 cut(s)	71, 209, 254, 260
BtgZI	GCGATG	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	2 cut(s)	226, 322
CciI	TCATGA	1 cut(s)	195
CfoI	GCGC	2 cut(s)	383, 469
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	3 cut(s)	252, 258, 315
CseI	GACGC	4 cut(s)	103, 208, 255, 401
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	1 cut(s)	196
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	3 cut(s)	159, 335, 407
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	3 cut(s)	37, 244, 450
DpnII	GATC	3 cut(s)	35, 242, 448
DrdI	GACNNNNNNGTC	1 cut(s)	82
DseDI	GACNNNNNNGTC	1 cut(s)	82
EaeI	YGGCCR	2 cut(s)	69, 207
Eam1104I	CTCTTC	2 cut(s)	107, 179
EarI	CTCTTC	2 cut(s)	107, 179
EciI	GGCGGA	1 cut(s)	307
Ecl136II	GAGCTC	1 cut(s)	60
Eco24I	GRGCYC	3 cut(s)	62, 288, 623
Eco47I	GGWCC	1 cut(s)	315
Eco53kI	GAGCTC	1 cut(s)	60
Eco72I	CACGTG	1 cut(s)	312
Eco88I	CYCGRG	2 cut(s)	287, 538
EcoICRI	GAGCTC	1 cut(s)	60
EcoNI	CCTNNNNNAGG	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	254
EcoT38I	GRGCYC	3 cut(s)	62, 288, 623
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
FaeI	CATG	1 cut(s)	199
FaiI	YATR	3 cut(s)	197, 376, 700
FaqI	GGGAC	3 cut(s)	33, 341, 368
FatI	CATG	1 cut(s)	195
FauI	CCCGC	2 cut(s)	195, 273
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	2 cut(s)	229, 506
FokI	GGATG	1 cut(s)	304
FriOI	GRGCYC	3 cut(s)	62, 288, 623
Fsp4HI	GCNGC	2 cut(s)	229, 506
GlaI	GCGC	2 cut(s)	382, 468
GluI	GCNGC	2 cut(s)	229, 506
GsaI	CCCAGC	2 cut(s)	328, 419
GsuI	CTGGAG	1 cut(s)	296
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	4 cut(s)	71, 209, 254, 260
HapII	CCGG	2 cut(s)	217, 321
HgaI	GACGC	4 cut(s)	103, 208, 255, 401
HhaI	GCGC	2 cut(s)	383, 469
Hin1I	GRCGYC	2 cut(s)	381, 393
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	2 cut(s)	381, 467
HinP1I	GCGC	2 cut(s)	381, 467
HinfI	GANTC	3 cut(s)	443, 643, 665
HpaII	CCGG	2 cut(s)	217, 321
HphI	GGTGA	4 cut(s)	100, 431, 571, 602
Hpy166II	GTNNAC	2 cut(s)	309, 376
Hpy188I	TCNGA	3 cut(s)	370, 442, 448
Hpy188III	TCNNGA	8 cut(s)	16, 121, 196, 240, 289, 337, 540, 611
Hpy8I	GTNNAC	2 cut(s)	309, 376
Hpy99I	CGWCG	5 cut(s)	36, 88, 236, 271, 516
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	6 cut(s)	32, 84, 112, 568, 638, 677
HpyCH4IV	ACGT	3 cut(s)	234, 311, 545
HpyCH4V	TGCA	1 cut(s)	571
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 199, 412, 514
HpyF3I	CTNAG	3 cut(s)	159, 335, 407
HpySE526I	ACGT	3 cut(s)	234, 311, 545
Hsp92I	GRCGYC	2 cut(s)	381, 393
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	2 cut(s)	381, 467
KasI	GGCGCC	1 cut(s)	380
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	35, 242, 448
LmnI	GCTCC	5 cut(s)	65, 277, 513, 522, 626
Lsp1109I	GCAGC	1 cut(s)	492
MaeII	ACGT	3 cut(s)	234, 311, 545
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	3 cut(s)	37, 244, 450
MbiI	CCGCTC	1 cut(s)	280
MboI	GATC	3 cut(s)	35, 242, 448
MboII	GAAGA	3 cut(s)	94, 166, 574
MhlI	GDGCHC	3 cut(s)	62, 288, 623
MlsI	TGGCCA	2 cut(s)	71, 209
MluCI	AATT	3 cut(s)	472, 499, 614
MluI	ACGCGT	1 cut(s)	345
MluNI	TGGCCA	2 cut(s)	71, 209
Mly113I	GGCGCC	1 cut(s)	381
Mox20I	TGGCCA	2 cut(s)	71, 209
MroNI	GCCGGC	1 cut(s)	320
MscI	TGGCCA	2 cut(s)	71, 209
MseI	TTAA	2 cut(s)	27, 599
Msp20I	TGGCCA	2 cut(s)	71, 209
MspI	CCGG	2 cut(s)	217, 321
MspR9I	CCNGG	2 cut(s)	218, 256
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	5 cut(s)	202, 228, 266, 347, 467
MwoI	GCNNNNNNNGC	4 cut(s)	94, 199, 412, 514
NaeI	GCCGGC	1 cut(s)	322
NarI	GGCGCC	1 cut(s)	381
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	3 cut(s)	35, 242, 448
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	5 cut(s)	253, 382, 518, 622, 679
NmuCI	GTSAC	1 cut(s)	419
PagI	TCATGA	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	322
PfeI	GAWTC	3 cut(s)	443, 643, 665
PflFI	GACNNNGTC	1 cut(s)	82
PfoI	TCCNGGA	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	230, 507
Ple19I	CGATCG	1 cut(s)	451
PluTI	GGCGCC	1 cut(s)	384
PmaCI	CACGTG	1 cut(s)	312
PmlI	CACGTG	1 cut(s)	312
Ppu21I	YACGTR	1 cut(s)	312
Psp124BI	GAGCTC	1 cut(s)	62
Psp1406I	AACGTT	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	254
PspCI	CACGTG	1 cut(s)	312
PspFI	CCCAGC	2 cut(s)	324, 415
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	5 cut(s)	253, 382, 518, 622, 679
PspPI	GGNCC	3 cut(s)	252, 258, 315
PsyI	GACNNNGTC	1 cut(s)	82
PvuI	CGATCG	1 cut(s)	451
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	27, 599
SatI	GCNGC	2 cut(s)	229, 506
Sau3AI	GATC	3 cut(s)	35, 242, 448
Sau96I	GGNCC	3 cut(s)	252, 258, 315
ScrFI	CCNGG	2 cut(s)	218, 256
SduI	GDGCHC	3 cut(s)	62, 288, 623
SfoI	GGCGCC	1 cut(s)	382
SinI	GGWCC	1 cut(s)	315
SmlI	CTYRAG	2 cut(s)	488, 653
SmoI	CTYRAG	2 cut(s)	488, 653
Sse9I	AATT	3 cut(s)	472, 499, 614
SsiI	CCGC	5 cut(s)	202, 228, 280, 318, 389
SspDI	GGCGCC	1 cut(s)	380
SstI	GAGCTC	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	216, 254
TaaI	ACNGT	6 cut(s)	32, 84, 112, 568, 638, 677
TaiI	ACGT	3 cut(s)	237, 314, 548
TaqI	TCGA	4 cut(s)	17, 34, 269, 451
TasI	AATT	3 cut(s)	472, 499, 614
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	3 cut(s)	443, 643, 665
Tru1I	TTAA	2 cut(s)	27, 599
Tru9I	TTAA	2 cut(s)	27, 599
TscAI	CASTG	1 cut(s)	573
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	1 cut(s)	573
Tth111I	GACNNNGTC	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	315
XagI	CCTNNNNNAGG	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.