Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008430

Physical Location & Seq

Genomic Coordinates Reverse (-)

3494732 .. 3495999

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G071300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGAAAACCACACCGTCGCATCCAACCCTTCTCTTCCTCACCGTCGTCCTCCTGATAACCGCGCAGCCATCACAGTCGTTCGCCTACTCGCAGTACCGAACCCTCTTCTCCCTCTCCCACTCGCTCATGACGCGAGTGGCCAACCTCCGCGAGGCACGTGGCGACGTTTCGGGGGCTGACCGGGCCAGGCTCGTCGCGGCAAAGCTGGAAGGGGGGCTCGTGGGCGGGTGGGGGTTCATGTGGTCGGCGGCCTGGGACTACATGAAGAACTACGCATGGAGGGAGTTGCCCTATTCGGAGGTATACGGTGCCGTTTCGGACGCGAACGAATTGCTCAGGTGGCTGGGTGAGTTGGGTCGAAAGGAATCGGACTCGGAGAGAGCCGCTTGGGTGGGACAGAATTACCGAAGTGTCCTCAGAGTCTCAAATTCGCTACTCCGTAGGCTCCTCACGGTGTTCTATCACTCGGGAACGTTGAGAGAATTGGTGAAGGCAGTGCAAAACGAGGTGGAGGAGGGGGAGCTGTTGAAGGATTTTCTTGAATTGGGCACCAATGATTTCAAAGGTTTGATCCAAATTCTCAAGGATTTGGGATTAAAATACGGTTCCTCTACTATGCACCAAGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.83

Weight (kDa)

6.92

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45660
fragaria_vesca	FvH4_3g06600 FvH4_3g06600 FvH4_3g06600 FvH4_3g06600 FvH4_3g06600 FvH4_4g34020
malus_domestica	MD00G1093500.v1.1 MD10G1270500.v1.1
prunus_persica	Prupe.4G071300_v2.0.a1
pyrus_communis	pycom05g27050
rosa_chinensis	RchiOBHm_Chr5g0012541
rosa_laevigata	RLG00000031923
rosa_multiflora	Rmu_co8311175.1_g000001 Rmu_sc0001889.1_g000035 Rmu_sc0023128.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064150
rosa_rugosa	Rorug05G0002300
rosa_samantha	Rh5AG096300 Rh5BG092500 Rh5CG105400 Rh5DG092000
rosa_wichuraiana	Rw5G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	311, 551
AccI	GTMKAC	1 cut(s)	306
AccII	CGCG	5 cut(s)	65, 136, 153, 200, 326
AciI	CCGC	6 cut(s)	63, 151, 200, 228, 251, 387
AclI	AACGTT	1 cut(s)	476
AclWI	GGATC	1 cut(s)	568
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	430, 579
AcvI	CACGTG	1 cut(s)	161
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	532, 545, 565
AjnI	CCWGG	2 cut(s)	188, 254
AluBI	AGCT	2 cut(s)	208, 526
AluI	AGCT	2 cut(s)	208, 526
Alw26I	GTCTC	1 cut(s)	430
AlwI	GGATC	1 cut(s)	568
Ama87I	CYCGRG	1 cut(s)	469
AoxI	GGCC	3 cut(s)	141, 186, 252
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	2 cut(s)	430, 579
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	186
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	3 cut(s)	34, 362, 502
AvaI	CYCGRG	1 cut(s)	469
BaeGI	GKGCMC	1 cut(s)	554
BalI	TGGCCA	1 cut(s)	143
BanI	GGYRCC	2 cut(s)	311, 551
BanII	GRGCYC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	221
BbrPI	CACGTG	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	299
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	2 cut(s)	190, 256
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	430
BisI	GCNGC	4 cut(s)	68, 201, 252, 387
BlsI	GCNGC	4 cut(s)	69, 202, 253, 388
Bme1390I	CCNGG	3 cut(s)	185, 190, 256
BmeT110I	CYCGRG	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	4 cut(s)	313, 449, 553, 610
BmrFI	CCNGG	3 cut(s)	185, 190, 256
BmsI	GCATC	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
BseBI	CCWGG	2 cut(s)	190, 256
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	352, 433
BseRI	GAGGAG	2 cut(s)	440, 530
BseSI	GKGCMC	1 cut(s)	554
BseXI	GCAGC	1 cut(s)	79
BseYI	CCCAGC	1 cut(s)	346
Bsh1236I	CGCG	5 cut(s)	65, 136, 153, 200, 326
BshFI	GGCC	3 cut(s)	143, 188, 254
BshNI	GGYRCC	2 cut(s)	311, 551
BsiHKCI	CYCGRG	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	184
BslFI	GGGAC	2 cut(s)	272, 411
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	430
BsmFI	GGGAC	2 cut(s)	272, 411
BsnI	GGCC	3 cut(s)	143, 188, 254
BsoBI	CYCGRG	1 cut(s)	469
Bsp1286I	GDGCHC	2 cut(s)	222, 554
Bsp143I	GATC	1 cut(s)	573
BspACI	CCGC	6 cut(s)	63, 151, 200, 228, 251, 387
BspANI	GGCC	3 cut(s)	143, 188, 254
BspCNI	CTCAG	2 cut(s)	351, 432
BspFNI	CGCG	5 cut(s)	65, 136, 153, 200, 326
BspHI	TCATGA	1 cut(s)	129
BspLI	GGNNCC	4 cut(s)	313, 449, 553, 610
BspPI	GGATC	1 cut(s)	568
BspT107I	GGYRCC	2 cut(s)	311, 551
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	573
BssNAI	GTATAC	1 cut(s)	307
BssSI	CACGAG	1 cut(s)	221
Bst1107I	GTATAC	1 cut(s)	307
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	2 cut(s)	190, 256
Bst4CI	ACNGT	6 cut(s)	18, 46, 78, 311, 457, 608
Bst6I	CTCTTC	2 cut(s)	41, 113
BstBAI	YACGTR	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	338, 419
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	22
BstFNI	CGCG	5 cut(s)	65, 136, 153, 200, 326
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	1 cut(s)	576
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	1 cut(s)	573
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 185, 343
BstNI	CCWGG	2 cut(s)	190, 256
BstSCI	CCNGG	3 cut(s)	183, 188, 254
BstSLI	GKGCMC	1 cut(s)	554
BstUI	CGCG	5 cut(s)	65, 136, 153, 200, 326
BstV1I	GCAGC	1 cut(s)	79
BstZ17I	GTATAC	1 cut(s)	307
BsuRI	GGCC	3 cut(s)	143, 188, 254
BtsCI	GGATG	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	504
CciI	TCATGA	1 cut(s)	129
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	186
CseI	GACGC	2 cut(s)	142, 332
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	4 cut(s)	130, 241, 265, 279
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	338, 419
DpnI	GATC	1 cut(s)	575
DpnII	GATC	1 cut(s)	573
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	41, 113
EarI	CTCTTC	2 cut(s)	41, 113
Eco24I	GRGCYC	1 cut(s)	222
Eco72I	CACGTG	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	469
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoRII	CCWGG	2 cut(s)	188, 254
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	4 cut(s)	133, 244, 268, 282
FaiI	YATR	7 cut(s)	131, 242, 266, 280, 307, 620, 634
FaqI	GGGAC	2 cut(s)	272, 411
FatI	CATG	4 cut(s)	129, 240, 264, 278
FauI	CCCGC	1 cut(s)	221
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	4 cut(s)	68, 201, 252, 387
FokI	GGATG	1 cut(s)	9
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	4 cut(s)	68, 201, 252, 387
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	4 cut(s)	68, 201, 252, 387
GsaI	CCCAGC	1 cut(s)	350
HaeIII	GGCC	3 cut(s)	143, 188, 254
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	2 cut(s)	142, 332
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	4 cut(s)	133, 244, 268, 282
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	3 cut(s)	368, 374, 423
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	3 cut(s)	34, 362, 502
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	5 cut(s)	301, 322, 373, 379, 422
Hpy188III	TCNNGA	4 cut(s)	55, 130, 471, 542
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	4 cut(s)	22, 50, 170, 200
HpyAV	CCTTC	4 cut(s)	41, 206, 487, 526
HpyCH4III	ACNGT	6 cut(s)	18, 46, 78, 311, 457, 608
HpyCH4IV	ACGT	3 cut(s)	160, 168, 476
HpyCH4V	TGCA	2 cut(s)	502, 622
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 185, 343
HpyF3I	CTNAG	2 cut(s)	338, 419
HpySE526I	ACGT	3 cut(s)	160, 168, 476
Hsp92II	CATG	4 cut(s)	133, 244, 268, 282
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	573
LmnI	GCTCC	2 cut(s)	453, 523
LpnPI	CCDG	9 cut(s)	68, 175, 194, 197, 202, 241, 268, 325, 332
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	31
MaeII	ACGT	3 cut(s)	160, 168, 476
MalI	GATC	1 cut(s)	575
MboI	GATC	1 cut(s)	573
MboII	GAAGA	3 cut(s)	28, 100, 280
MhlI	GDGCHC	2 cut(s)	222, 554
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	6 cut(s)	332, 403, 430, 485, 545, 579
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	368, 432
MmeI	TCCRAC	1 cut(s)	50
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	1 cut(s)	599
Msp20I	TGGCCA	1 cut(s)	143
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	3 cut(s)	185, 190, 256
MvaI	CCWGG	2 cut(s)	190, 256
MvnI	CGCG	5 cut(s)	65, 136, 153, 200, 326
MwoI	GCNNNNNNNGC	3 cut(s)	133, 185, 343
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	1 cut(s)	573
NlaIII	CATG	4 cut(s)	133, 244, 268, 282
NlaIV	GGNNCC	4 cut(s)	313, 449, 553, 610
PagI	TCATGA	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	4 cut(s)	69, 202, 253, 388
PleI	GAGTC	2 cut(s)	368, 431
PmaCI	CACGTG	1 cut(s)	161
PmlI	CACGTG	1 cut(s)	161
PpsI	GAGTC	2 cut(s)	368, 431
Ppu21I	YACGTR	1 cut(s)	161
Psp1406I	AACGTT	1 cut(s)	476
Psp6I	CCWGG	2 cut(s)	188, 254
PspCI	CACGTG	1 cut(s)	161
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	2 cut(s)	188, 254
PspN4I	GGNNCC	4 cut(s)	313, 449, 553, 610
PspPI	GGNCC	1 cut(s)	186
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	599
SatI	GCNGC	4 cut(s)	68, 201, 252, 387
Sau3AI	GATC	1 cut(s)	573
Sau96I	GGNCC	1 cut(s)	186
SchI	GAGTC	2 cut(s)	368, 432
ScrFI	CCNGG	3 cut(s)	185, 190, 256
SduI	GDGCHC	2 cut(s)	222, 554
SfaNI	GCATC	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	6 cut(s)	332, 403, 430, 485, 545, 579
SsiI	CCGC	6 cut(s)	63, 151, 200, 228, 251, 387
StyD4I	CCNGG	3 cut(s)	183, 188, 254
TaaI	ACNGT	6 cut(s)	18, 46, 78, 311, 457, 608
TaiI	ACGT	3 cut(s)	163, 171, 479
TaqI	TCGA	1 cut(s)	361
TasI	AATT	6 cut(s)	332, 403, 430, 485, 545, 579
TauI	GCSGC	3 cut(s)	203, 254, 389
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TscAI	CASTG	1 cut(s)	504
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	229, 281
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	1 cut(s)	504
XagI	CCTNNNNNAGG	1 cut(s)	152
XapI	RAATTY	2 cut(s)	430, 579
XmiI	GTMKAC	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.