FvH4_3g06600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008430
Physical Location & Seq
Forward (+)
3800280 .. 3802744
2465 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06600.t2

Sequence Viewer

Length: 642 bp
ATGGCCAAAACGACGCCGTCGCCGGCAATTCTCCTCCTCACCCTCCTCCTCCTGATCACACCGCCGCCCTCCCAGTCCCTCCCCTACTCCCAATACCGCACCCTCTTCTCCCTCGCCCACTCGCTCATGACGCGCGTGGCCAACCTCCGCGCCTCCCGCGGCGACCACGCCGGATCGGACCGGGCCAGGAACATCGCCGCCAAAATGGAGAGCGGGCTGGGCCTCGGCGTCTGGGGCTTCATGTGGTCGGCGGGGTGGGACTACCTCAAGAACTACTCCTGGAGGGAGCTGCCGTACGCGGAGATGTACGGCGCCGCGTCGGAGGCGAGCGAGTTGATGAGGTGGCTCGGTGAGTTGACTCGGAAGGAATCGGACTCCGAGCGAGCCGCTTGGATCGGTCAGAATTACCAAAATGTCTTCAGGGTCTCCACTTCGCTGCTGCGTAGGCTTCTCAGGGTGTTCAGTCAGTCGGGAGCTTTGAGAGAAGTGGTGAAGGCAGTTCAAAGAGAGGTGGTGGAGGGCGAGCTATTGAAGGACTGTCTTGAATTGGGCAGCAATGACTTTCGTGGTGTGCTTCAGATTCTCAAGGATTTGGGATTACAGTACGGTTCCGCCGCTAGTTCTAAGCACCAAGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.83

Weight (kDa)

9.24

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AccBSI CCGCTC 1 cut(s) 213
AccII CGCG 6 cut(s) 133, 135, 150, 159, 299, 317
AclWI GGATC 2 cut(s) 181, 401
AcoI YGGCCR 2 cut(s) 3, 138
AcuI CTGAAG 2 cut(s) 403, 560
AcyI GRCGYC 3 cut(s) 14, 228, 312
AfaI GTAC 3 cut(s) 296, 308, 605
AgsI TTSAA 3 cut(s) 503, 532, 545
AjnI CCWGG 2 cut(s) 185, 278
AluBI AGCT 3 cut(s) 289, 476, 526
AluI AGCT 3 cut(s) 289, 476, 526
Alw26I GTCTC 1 cut(s) 430
AlwI GGATC 2 cut(s) 181, 401
AoxI GGCC 4 cut(s) 3, 138, 183, 220
ApeKI GCWGC 4 cut(s) 289, 436, 439, 552
AspLEI GCGC 3 cut(s) 135, 152, 314
AspS9I GGNCC 3 cut(s) 178, 183, 220
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 3 cut(s) 31, 362, 502
AvaII GGWCC 1 cut(s) 178
BalI TGGCCA 2 cut(s) 5, 140
BanI GGYRCC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 409
BbvI GCAGC 4 cut(s) 276, 423, 426, 564
BceAI ACGGC 2 cut(s) 277, 325
BciT130I CCWGG 2 cut(s) 187, 280
BclI TGATCA 1 cut(s) 54
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 430
BfaI CTAG 1 cut(s) 618
BfoI RGCGCY 1 cut(s) 315
Bme1390I CCNGG 3 cut(s) 182, 187, 280
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 3 cut(s) 178, 183, 220
BmiI GGNNCC 2 cut(s) 313, 610
BmrFI CCNGG 3 cut(s) 182, 187, 280
BmrI ACTGGG 1 cut(s) 67
BmuI ACTGGG 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 409
BpmI CTGGAG 1 cut(s) 301
BpuEI CTTGAG 2 cut(s) 251, 569
BpuMI CCSGG 1 cut(s) 182
BsaHI GRCGYC 3 cut(s) 14, 228, 312
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 2 cut(s) 157, 223
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 73
Bse3DI GCAATG 1 cut(s) 562
BseBI CCWGG 2 cut(s) 187, 280
BseDI CCNNGG 2 cut(s) 157, 223
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 1 cut(s) 466
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 4 cut(s) 23, 26, 35, 38
BseXI GCAGC 4 cut(s) 276, 423, 426, 564
BseYI CCCAGC 1 cut(s) 217
Bsh1236I CGCG 6 cut(s) 133, 135, 150, 159, 299, 317
BshFI GGCC 4 cut(s) 5, 140, 185, 222
BshNI GGYRCC 1 cut(s) 311
BsiSI CCGG 3 cut(s) 23, 171, 181
BsiWI CGTACG 1 cut(s) 294
BslFI GGGAC 2 cut(s) 61, 272
BsmAI GTCTC 1 cut(s) 430
BsmFI GGGAC 2 cut(s) 61, 272
BsnI GGCC 4 cut(s) 5, 140, 185, 222
Bso31I GGTCTC 1 cut(s) 430
Bsp143I GATC 3 cut(s) 54, 173, 393
BspANI GGCC 4 cut(s) 5, 140, 185, 222
BspCNI CTCAG 1 cut(s) 465
BspFNI CGCG 6 cut(s) 133, 135, 150, 159, 299, 317
BspHI TCATGA 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 313, 610
BspPI GGATC 2 cut(s) 181, 401
BspT107I GGYRCC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 430
BsrBI CCGCTC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 562
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 1 cut(s) 73
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 157, 223
BssMI GATC 3 cut(s) 54, 173, 393
BssNI GRCGYC 3 cut(s) 14, 228, 312
Bst2UI CCWGG 2 cut(s) 187, 280
Bst4CI ACNGT 3 cut(s) 539, 603, 608
Bst6I CTCTTC 1 cut(s) 110
BstACI GRCGYC 3 cut(s) 14, 228, 312
BstC8I GCNNGC 5 cut(s) 24, 215, 328, 384, 524
BstDEI CTNAG 2 cut(s) 452, 624
BstDSI CCRYGG 1 cut(s) 157
BstFNI CGCG 6 cut(s) 133, 135, 150, 159, 299, 317
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 3 cut(s) 135, 152, 314
BstKTI GATC 3 cut(s) 57, 176, 396
BstMAI GTCTC 1 cut(s) 430
BstMBI GATC 3 cut(s) 54, 173, 393
BstMWI GCNNNNNNNGC 6 cut(s) 130, 156, 219, 234, 323, 445
BstNI CCWGG 2 cut(s) 187, 280
BstSCI CCNGG 3 cut(s) 180, 185, 278
BstUI CGCG 6 cut(s) 133, 135, 150, 159, 299, 317
BstV1I GCAGC 4 cut(s) 276, 423, 426, 564
BstV2I GAAGAC 1 cut(s) 409
BsuRI GGCC 4 cut(s) 5, 140, 185, 222
BtgI CCRYGG 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 178
Cac8I GCNNGC 5 cut(s) 24, 215, 328, 384, 524
CciI TCATGA 1 cut(s) 126
CfoI GCGC 3 cut(s) 135, 152, 314
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 3 cut(s) 178, 183, 220
Cfr42I CCGCGG 1 cut(s) 160
CpoI CGGWCCG 1 cut(s) 178
CseI GACGC 4 cut(s) 22, 139, 217, 306
Csp6I GTAC 3 cut(s) 295, 307, 604
CspI CGGWCCG 1 cut(s) 178
CviAII CATG 2 cut(s) 127, 241
CviQI GTAC 3 cut(s) 295, 307, 604
DdeI CTNAG 2 cut(s) 452, 624
DinI GGCGCC 1 cut(s) 313
DpnI GATC 3 cut(s) 56, 175, 395
DpnII GATC 3 cut(s) 54, 173, 393
EaeI YGGCCR 2 cut(s) 3, 138
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
EciI GGCGGA 1 cut(s) 601
Eco31I GGTCTC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 2 cut(s) 403, 560
EcoRII CCWGG 2 cut(s) 185, 278
EgeI GGCGCC 1 cut(s) 313
EheI GGCGCC 1 cut(s) 313
FaeI CATG 2 cut(s) 130, 244
FaiI YATR 2 cut(s) 128, 242
FaqI GGGAC 2 cut(s) 61, 272
FatI CATG 2 cut(s) 126, 240
FauI CCCGC 3 cut(s) 164, 206, 244
FbaI TGATCA 1 cut(s) 54
FspBI CTAG 1 cut(s) 618
GlaI GCGC 3 cut(s) 134, 151, 313
GsaI CCCAGC 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 301
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 4 cut(s) 5, 140, 185, 222
HapII CCGG 3 cut(s) 23, 171, 181
HgaI GACGC 4 cut(s) 22, 139, 217, 306
HhaI GCGC 3 cut(s) 135, 152, 314
Hin1I GRCGYC 3 cut(s) 14, 228, 312
Hin1II CATG 2 cut(s) 130, 244
Hin6I GCGC 3 cut(s) 133, 150, 312
HinP1I GCGC 3 cut(s) 133, 150, 312
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HinfI GANTC 4 cut(s) 358, 368, 374, 580
HpaII CCGG 3 cut(s) 23, 171, 181
HphI GGTGA 3 cut(s) 31, 362, 502
Hpy166II GTNNAC 1 cut(s) 357
Hpy188I TCNGA 7 cut(s) 178, 322, 363, 373, 379, 402, 579
Hpy188III TCNNGA 5 cut(s) 52, 127, 268, 471, 542
Hpy8I GTNNAC 1 cut(s) 357
Hpy99I CGWCG 3 cut(s) 16, 22, 322
HpyAV CCTTC 3 cut(s) 358, 487, 526
HpyCH4III ACNGT 3 cut(s) 539, 603, 608
HpyF10VI GCNNNNNNNGC 6 cut(s) 130, 156, 219, 234, 323, 445
HpyF3I CTNAG 2 cut(s) 452, 624
Hsp92I GRCGYC 3 cut(s) 14, 228, 312
Hsp92II CATG 2 cut(s) 130, 244
HspAI GCGC 3 cut(s) 133, 150, 312
KasI GGCGCC 1 cut(s) 311
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 54
KspI CCGCGG 1 cut(s) 160
Kzo9I GATC 3 cut(s) 54, 173, 393
LmnI GCTCC 2 cut(s) 286, 473
Lsp1109I GCAGC 4 cut(s) 276, 423, 426, 564
MaeI CTAG 1 cut(s) 618
MalI GATC 3 cut(s) 56, 175, 395
MbiI CCGCTC 1 cut(s) 213
MboI GATC 3 cut(s) 54, 173, 393
MboII GAAGA 2 cut(s) 97, 409
MlsI TGGCCA 2 cut(s) 5, 140
MluCI AATT 3 cut(s) 27, 403, 545
MluNI TGGCCA 2 cut(s) 5, 140
Mly113I GGCGCC 1 cut(s) 312
MlyI GAGTC 2 cut(s) 352, 368
MmeI TCCRAC 1 cut(s) 300
Mox20I TGGCCA 2 cut(s) 5, 140
MroNI GCCGGC 1 cut(s) 22
MscI TGGCCA 2 cut(s) 5, 140
Msp20I TGGCCA 2 cut(s) 5, 140
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 3 cut(s) 23, 171, 181
MspR9I CCNGG 3 cut(s) 182, 187, 280
MvaI CCWGG 2 cut(s) 187, 280
MvnI CGCG 6 cut(s) 133, 135, 150, 159, 299, 317
MwoI GCNNNNNNNGC 6 cut(s) 130, 156, 219, 234, 323, 445
NaeI GCCGGC 1 cut(s) 24
NarI GGCGCC 1 cut(s) 312
NciI CCSGG 1 cut(s) 182
NdeII GATC 3 cut(s) 54, 173, 393
NgoMIV GCCGGC 1 cut(s) 22
NlaIII CATG 2 cut(s) 130, 244
NlaIV GGNNCC 2 cut(s) 313, 610
NmeAIII GCCGAG 1 cut(s) 204
PagI TCATGA 1 cut(s) 126
PdiI GCCGGC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 368, 580
Pfl23II CGTACG 1 cut(s) 294
PflFI GACNNNGTC 1 cut(s) 16
PfoI TCCNGGA 1 cut(s) 278
PleI GAGTC 2 cut(s) 352, 368
PluTI GGCGCC 1 cut(s) 315
PpsI GAGTC 2 cut(s) 352, 368
Psp6I CCWGG 2 cut(s) 185, 278
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 2 cut(s) 185, 278
PspLI CGTACG 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 313, 610
PspPI GGNCC 3 cut(s) 178, 183, 220
PsyI GACNNNGTC 1 cut(s) 16
RsaI GTAC 3 cut(s) 296, 308, 605
RsaNI GTAC 3 cut(s) 295, 307, 604
Rsr2I CGGWCCG 1 cut(s) 178
RsrII CGGWCCG 1 cut(s) 178
SacII CCGCGG 1 cut(s) 160
Sau3AI GATC 3 cut(s) 54, 173, 393
Sau96I GGNCC 3 cut(s) 178, 183, 220
SchI GAGTC 2 cut(s) 352, 368
ScrFI CCNGG 3 cut(s) 182, 187, 280
SetI ASST 7 cut(s) 147, 267, 291, 344, 478, 513, 528
SfoI GGCGCC 1 cut(s) 313
Sfr303I CCGCGG 1 cut(s) 160
SgrBI CCGCGG 1 cut(s) 160
SinI GGWCC 1 cut(s) 178
SmlI CTYRAG 2 cut(s) 266, 584
SmoI CTYRAG 2 cut(s) 266, 584
Sse9I AATT 3 cut(s) 27, 403, 545
SspDI GGCGCC 1 cut(s) 311
SspMI CTAG 1 cut(s) 618
StyD4I CCNGG 3 cut(s) 180, 185, 278
TaaI ACNGT 3 cut(s) 539, 603, 608
TaqII GACCGA 1 cut(s) 386
TasI AATT 3 cut(s) 27, 403, 545
TauI GCSGC 6 cut(s) 67, 162, 200, 317, 389, 617
TfiI GAWTC 2 cut(s) 368, 580
TseI GCWGC 4 cut(s) 289, 436, 439, 552
TspDTI ATGAA 1 cut(s) 229
Tth111I GACNNNGTC 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 178
XspI CTAG 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.