Rmu_co8311175.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8311175.1
OG0008430
Physical Location & Seq
Reverse (-)
2 .. 180
179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8311175.1_g000001.1.cds

Sequence Viewer

Length: 179 bp
atggccaaaacgacgccgtcgccggcaattctcttcctcaccctcctcctcctgatcacgccgccgccctcccaatccctcccctactcccaataccggaccctcttctccctcgcccactcgctcatgacgcgcgtggccaacctccgcgcctcccgcggcgaccacgccggttcgga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.41

Weight (kDa)

10.93

Isoelectric Point (pI)

55.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 133, 135, 150, 159
AciI CCGC 5 cut(s) 62, 65, 148, 157, 159
AcoI YGGCCR 2 cut(s) 3, 138
AcyI GRCGYC 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 96
AoxI GGCC 2 cut(s) 3, 138
AspLEI GCGC 2 cut(s) 135, 152
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 31
AvaII GGWCC 1 cut(s) 99
BalI TGGCCA 2 cut(s) 5, 140
BclI TGATCA 1 cut(s) 54
BisI GCNGC 3 cut(s) 62, 65, 160
BlsI GCNGC 3 cut(s) 63, 66, 161
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 157
BsaWI WCCGGW 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse118I RCCGGY 2 cut(s) 22, 170
BseDI CCNNGG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 96
BseRI GAGGAG 2 cut(s) 35, 38
Bsh1236I CGCG 4 cut(s) 133, 135, 150, 159
BshFI GGCC 2 cut(s) 5, 140
BsiSI CCGG 3 cut(s) 23, 97, 171
BslI CCNNNNNNNGG 1 cut(s) 96
BsnI GGCC 2 cut(s) 5, 140
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 5 cut(s) 62, 65, 148, 157, 159
BspANI GGCC 2 cut(s) 5, 140
BspFNI CGCG 4 cut(s) 133, 135, 150, 159
BspHI TCATGA 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 101
BsrFI RCCGGY 2 cut(s) 22, 170
BssAI RCCGGY 2 cut(s) 22, 170
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 54
BssNI GRCGYC 1 cut(s) 14
Bst6I CTCTTC 2 cut(s) 38, 110
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 24
BstDSI CCRYGG 1 cut(s) 157
BstFNI CGCG 4 cut(s) 133, 135, 150, 159
BstHHI GCGC 2 cut(s) 135, 152
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 2 cut(s) 130, 156
BstUI CGCG 4 cut(s) 133, 135, 150, 159
BsuRI GGCC 2 cut(s) 5, 140
BtgI CCRYGG 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 24
CciI TCATGA 1 cut(s) 126
CfoI GCGC 2 cut(s) 135, 152
Cfr10I RCCGGY 2 cut(s) 22, 170
Cfr13I GGNCC 1 cut(s) 99
Cfr42I CCGCGG 1 cut(s) 160
CseI GACGC 2 cut(s) 22, 139
CviAII CATG 1 cut(s) 127
CviJI RGCY 2 cut(s) 5, 140
CviKI_1 RGCY 2 cut(s) 5, 140
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
EaeI YGGCCR 2 cut(s) 3, 138
Eam1104I CTCTTC 2 cut(s) 38, 110
EarI CTCTTC 2 cut(s) 38, 110
Eco47I GGWCC 1 cut(s) 99
FaeI CATG 1 cut(s) 130
FaiI YATR 1 cut(s) 128
FatI CATG 1 cut(s) 126
FauI CCCGC 1 cut(s) 164
FbaI TGATCA 1 cut(s) 54
Fnu4HI GCNGC 3 cut(s) 62, 65, 160
Fsp4HI GCNGC 3 cut(s) 62, 65, 160
GlaI GCGC 2 cut(s) 134, 151
GluI GCNGC 3 cut(s) 62, 65, 160
HaeIII GGCC 2 cut(s) 5, 140
HapII CCGG 3 cut(s) 23, 97, 171
HgaI GACGC 2 cut(s) 22, 139
HhaI GCGC 2 cut(s) 135, 152
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 2 cut(s) 133, 150
HinP1I GCGC 2 cut(s) 133, 150
HpaII CCGG 3 cut(s) 23, 97, 171
HphI GGTGA 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 2 cut(s) 52, 127
Hpy99I CGWCG 2 cut(s) 16, 22
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 156
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 2 cut(s) 133, 150
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 54
KspI CCGCGG 1 cut(s) 160
Kzo9I GATC 1 cut(s) 54
LpnPI CCDG 3 cut(s) 36, 65, 110
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 2 cut(s) 25, 97
MlsI TGGCCA 2 cut(s) 5, 140
MluCI AATT 1 cut(s) 27
MluNI TGGCCA 2 cut(s) 5, 140
Mox20I TGGCCA 2 cut(s) 5, 140
MroNI GCCGGC 1 cut(s) 22
MscI TGGCCA 2 cut(s) 5, 140
Msp20I TGGCCA 2 cut(s) 5, 140
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 3 cut(s) 23, 97, 171
MvnI CGCG 4 cut(s) 133, 135, 150, 159
MwoI GCNNNNNNNGC 2 cut(s) 130, 156
NaeI GCCGGC 1 cut(s) 24
NdeII GATC 1 cut(s) 54
NgoMIV GCCGGC 1 cut(s) 22
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 101
PagI TCATGA 1 cut(s) 126
PdiI GCCGGC 1 cut(s) 24
PflFI GACNNNGTC 1 cut(s) 16
PkrI GCNGC 3 cut(s) 63, 66, 161
PspN4I GGNNCC 1 cut(s) 101
PspPI GGNCC 1 cut(s) 99
PsyI GACNNNGTC 1 cut(s) 16
SacII CCGCGG 1 cut(s) 160
SatI GCNGC 3 cut(s) 62, 65, 160
Sau3AI GATC 1 cut(s) 54
Sau96I GGNCC 1 cut(s) 99
SetI ASST 1 cut(s) 147
Sfr303I CCGCGG 1 cut(s) 160
SgrBI CCGCGG 1 cut(s) 160
SinI GGWCC 1 cut(s) 99
Sse9I AATT 1 cut(s) 27
SsiI CCGC 5 cut(s) 62, 65, 148, 157, 159
TasI AATT 1 cut(s) 27
TauI GCSGC 3 cut(s) 64, 67, 162
Tth111I GACNNNGTC 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.