Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008430

Physical Location & Seq

Genomic Coordinates Reverse (-)

8271148 .. 8272688

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG092500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCCAAAACGACGCCGTCGCCGGCAATTCTCTTCCTCACCCTCCTCCTCGTGATCACGCCGCCGCCCTCCCAATCCCTCCCCTACTCCCAATACCGGACCCTCTTCTCCCTCGCCCACTCGCTCATGACGCGCGTGGCCAACCTCCGCGCCTCCCGCGGCGACCACGCCGGTTCGGACCGGGCCAGGAACATCGAGGCGAAAATGGAGAGGGGGCTGGGCCTCGGCGTCTGGGGGTTCATGTGGTCGGCTGGGTGGGACTACGTCAAGAACTACTCGTGGAGGGAGCTGCCGTACACGGAGATGTACGGCGCCGCGTCGGAGGCGGGCGAGTTGATGAGGTGGCTGGGTGAGTTGACTCGGAAGGAATCGGACTCCGAGCGAGCGGCGTGGATCGGTCAGAATTACCAAAATGTCTTCAGGGTCTCTACTTCGCTGCTGCGTAGGCTCCTCCGAGTGTTCAGTCAGTCGGGAACGTTGAGAGAAGTGGTGAAGGCAGTTCAAAGAGAGGTAGTGGAGGGCGAGTTATTGAAGGACTGTCTTGAATTGGGCAGCAATGACTTTCAAGGTGTGCTTCAAATCCTCAAGGATTTGGGAGTACAATACGGCTCGGCTCCTAGTTCTAAGCACCAAGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.96

Weight (kDa)

9.01

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45660
fragaria_vesca	FvH4_3g06600 FvH4_3g06600 FvH4_3g06600 FvH4_3g06600 FvH4_3g06600 FvH4_4g34020
malus_domestica	MD00G1093500.v1.1 MD10G1270500.v1.1
prunus_persica	Prupe.4G071300_v2.0.a1
pyrus_communis	pycom05g27050
rosa_chinensis	RchiOBHm_Chr5g0012541
rosa_laevigata	RLG00000031923
rosa_multiflora	Rmu_co8311175.1_g000001 Rmu_sc0001889.1_g000035 Rmu_sc0023128.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064150
rosa_rugosa	Rorug05G0002300
rosa_samantha	Rh5AG096300 Rh5BG092500 Rh5CG105400 Rh5DG092000
rosa_wichuraiana	Rw5G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	311
AccBSI	CCGCTC	1 cut(s)	386
AccII	CGCG	5 cut(s)	133, 135, 150, 159, 317
AciI	CCGC	8 cut(s)	62, 65, 148, 157, 159, 315, 326, 386
AclI	AACGTT	1 cut(s)	476
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	2 cut(s)	3, 138
AcuI	CTGAAG	1 cut(s)	403
AcyI	GRCGYC	3 cut(s)	14, 228, 312
AfaI	GTAC	3 cut(s)	296, 308, 600
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	5 cut(s)	503, 532, 545, 566, 578
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	430
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	4 cut(s)	3, 138, 183, 220
ApeKI	GCWGC	4 cut(s)	289, 436, 439, 552
AspLEI	GCGC	3 cut(s)	135, 152, 314
AspS9I	GGNCC	4 cut(s)	99, 178, 183, 220
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	3 cut(s)	31, 362, 502
AvaII	GGWCC	2 cut(s)	99, 178
BalI	TGGCCA	2 cut(s)	5, 140
BanI	GGYRCC	1 cut(s)	311
BauI	CACGAG	2 cut(s)	50, 277
BbsI	GAAGAC	1 cut(s)	409
BbvI	GCAGC	4 cut(s)	276, 423, 426, 564
BceAI	ACGGC	3 cut(s)	277, 325, 622
BciT130I	CCWGG	1 cut(s)	187
BclI	TGATCA	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	430
BfaI	CTAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	315
BglII	AGATCT	1 cut(s)	634
BisI	GCNGC	9 cut(s)	62, 65, 160, 290, 315, 387, 437, 440, 553
BlsI	GCNGC	9 cut(s)	63, 66, 161, 291, 316, 388, 438, 441, 554
Bme1390I	CCNGG	2 cut(s)	182, 187
Bme18I	GGWCC	2 cut(s)	99, 178
BmgT120I	GGNCC	4 cut(s)	99, 178, 183, 220
BmiI	GGNNCC	4 cut(s)	101, 313, 449, 615
BmrFI	CCNGG	2 cut(s)	182, 187
BpiI	GAAGAC	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	182
BsaHI	GRCGYC	3 cut(s)	14, 228, 312
BsaI	GGTCTC	1 cut(s)	430
BsaJI	CCNNGG	2 cut(s)	157, 223
BsaWI	WCCGGW	1 cut(s)	96
BsaXI	ACNNNNNCTCC	4 cut(s)	278, 308, 509, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse118I	RCCGGY	2 cut(s)	22, 170
Bse3DI	GCAATG	1 cut(s)	562
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	157, 223
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	562
BseRI	GAGGAG	3 cut(s)	35, 38, 440
BseXI	GCAGC	4 cut(s)	276, 423, 426, 564
BseYI	CCCAGC	3 cut(s)	217, 251, 346
Bsh1236I	CGCG	5 cut(s)	133, 135, 150, 159, 317
BshFI	GGCC	4 cut(s)	5, 140, 185, 222
BshNI	GGYRCC	1 cut(s)	311
BsiSI	CCGG	4 cut(s)	23, 97, 171, 181
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	4 cut(s)	5, 140, 185, 222
Bso31I	GGTCTC	1 cut(s)	430
Bsp143I	GATC	3 cut(s)	54, 393, 634
BspACI	CCGC	8 cut(s)	62, 65, 148, 157, 159, 315, 326, 386
BspANI	GGCC	4 cut(s)	5, 140, 185, 222
BspFNI	CGCG	5 cut(s)	133, 135, 150, 159, 317
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	4 cut(s)	101, 313, 449, 615
BspPI	GGATC	1 cut(s)	401
BspT107I	GGYRCC	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	430
BsrBI	CCGCTC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	562
BsrFI	RCCGGY	2 cut(s)	22, 170
BssAI	RCCGGY	2 cut(s)	22, 170
BssECI	CCNNGG	2 cut(s)	157, 223
BssMI	GATC	3 cut(s)	54, 393, 634
BssNI	GRCGYC	3 cut(s)	14, 228, 312
BssSI	CACGAG	2 cut(s)	50, 277
Bst2BI	CACGAG	2 cut(s)	50, 277
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	539
Bst6I	CTCTTC	2 cut(s)	38, 110
BstACI	GRCGYC	3 cut(s)	14, 228, 312
BstC8I	GCNNGC	3 cut(s)	24, 328, 384
BstDEI	CTNAG	1 cut(s)	624
BstDSI	CCRYGG	1 cut(s)	157
BstFNI	CGCG	5 cut(s)	133, 135, 150, 159, 317
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	3 cut(s)	135, 152, 314
BstKTI	GATC	3 cut(s)	57, 396, 637
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	3 cut(s)	54, 393, 634
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 156, 323, 445
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	180, 185
BstUI	CGCG	5 cut(s)	133, 135, 150, 159, 317
BstV1I	GCAGC	4 cut(s)	276, 423, 426, 564
BstV2I	GAAGAC	1 cut(s)	409
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
BsuRI	GGCC	4 cut(s)	5, 140, 185, 222
BtgI	CCRYGG	1 cut(s)	157
Cac8I	GCNNGC	3 cut(s)	24, 328, 384
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	3 cut(s)	135, 152, 314
Cfr10I	RCCGGY	2 cut(s)	22, 170
Cfr13I	GGNCC	4 cut(s)	99, 178, 183, 220
Cfr42I	CCGCGG	1 cut(s)	160
CpoI	CGGWCCG	1 cut(s)	178
CseI	GACGC	4 cut(s)	22, 139, 217, 306
Csp6I	GTAC	3 cut(s)	295, 307, 599
CspI	CGGWCCG	1 cut(s)	178
CviAII	CATG	2 cut(s)	127, 241
CviQI	GTAC	3 cut(s)	295, 307, 599
DdeI	CTNAG	1 cut(s)	624
DinI	GGCGCC	1 cut(s)	313
DpnI	GATC	3 cut(s)	56, 395, 636
DpnII	GATC	3 cut(s)	54, 393, 634
EaeI	YGGCCR	2 cut(s)	3, 138
Eam1104I	CTCTTC	2 cut(s)	38, 110
EarI	CTCTTC	2 cut(s)	38, 110
Eco31I	GGTCTC	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	99, 178
Eco57I	CTGAAG	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	185
EgeI	GGCGCC	1 cut(s)	313
EheI	GGCGCC	1 cut(s)	313
FaeI	CATG	2 cut(s)	130, 244
FaiI	YATR	2 cut(s)	128, 242
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	2 cut(s)	126, 240
FauI	CCCGC	2 cut(s)	164, 319
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	9 cut(s)	62, 65, 160, 290, 315, 387, 437, 440, 553
Fsp4HI	GCNGC	9 cut(s)	62, 65, 160, 290, 315, 387, 437, 440, 553
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	3 cut(s)	134, 151, 313
GluI	GCNGC	9 cut(s)	62, 65, 160, 290, 315, 387, 437, 440, 553
GsaI	CCCAGC	3 cut(s)	221, 255, 350
HaeII	RGCGCY	1 cut(s)	315
HaeIII	GGCC	4 cut(s)	5, 140, 185, 222
HapII	CCGG	4 cut(s)	23, 97, 171, 181
HgaI	GACGC	4 cut(s)	22, 139, 217, 306
HhaI	GCGC	3 cut(s)	135, 152, 314
Hin1I	GRCGYC	3 cut(s)	14, 228, 312
Hin1II	CATG	2 cut(s)	130, 244
Hin6I	GCGC	3 cut(s)	133, 150, 312
HinP1I	GCGC	3 cut(s)	133, 150, 312
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HinfI	GANTC	3 cut(s)	358, 368, 374
HpaII	CCGG	4 cut(s)	23, 97, 171, 181
HphI	GGTGA	3 cut(s)	31, 362, 502
Hpy166II	GTNNAC	2 cut(s)	297, 357
Hpy188I	TCNGA	7 cut(s)	178, 322, 363, 373, 379, 402, 455
Hpy188III	TCNNGA	5 cut(s)	52, 127, 268, 471, 542
Hpy8I	GTNNAC	2 cut(s)	297, 357
Hpy99I	CGWCG	3 cut(s)	16, 22, 322
HpyAV	CCTTC	3 cut(s)	358, 487, 526
HpyCH4III	ACNGT	1 cut(s)	539
HpyCH4IV	ACGT	2 cut(s)	264, 476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 156, 323, 445
HpyF3I	CTNAG	1 cut(s)	624
HpySE526I	ACGT	2 cut(s)	264, 476
Hsp92I	GRCGYC	3 cut(s)	14, 228, 312
Hsp92II	CATG	2 cut(s)	130, 244
HspAI	GCGC	3 cut(s)	133, 150, 312
KasI	GGCGCC	1 cut(s)	311
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	54
KspI	CCGCGG	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	54, 393, 634
LmnI	GCTCC	3 cut(s)	286, 453, 619
Lsp1109I	GCAGC	4 cut(s)	276, 423, 426, 564
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	2 cut(s)	264, 476
MalI	GATC	3 cut(s)	56, 395, 636
MbiI	CCGCTC	1 cut(s)	386
MboI	GATC	3 cut(s)	54, 393, 634
MboII	GAAGA	3 cut(s)	25, 97, 409
MflI	RGATCY	1 cut(s)	634
MlsI	TGGCCA	2 cut(s)	5, 140
MluCI	AATT	3 cut(s)	27, 403, 545
MluNI	TGGCCA	2 cut(s)	5, 140
Mly113I	GGCGCC	1 cut(s)	312
MlyI	GAGTC	2 cut(s)	352, 368
MmeI	TCCRAC	1 cut(s)	300
Mox20I	TGGCCA	2 cut(s)	5, 140
MroNI	GCCGGC	1 cut(s)	22
MscI	TGGCCA	2 cut(s)	5, 140
MslI	CAYNNNNRTG	1 cut(s)	302
Msp20I	TGGCCA	2 cut(s)	5, 140
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	4 cut(s)	23, 97, 171, 181
MspR9I	CCNGG	2 cut(s)	182, 187
MvaI	CCWGG	1 cut(s)	187
MvnI	CGCG	5 cut(s)	133, 135, 150, 159, 317
MwoI	GCNNNNNNNGC	4 cut(s)	130, 156, 323, 445
NaeI	GCCGGC	1 cut(s)	24
NarI	GGCGCC	1 cut(s)	312
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	3 cut(s)	54, 393, 634
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	2 cut(s)	130, 244
NlaIV	GGNNCC	4 cut(s)	101, 313, 449, 615
NmeAIII	GCCGAG	2 cut(s)	204, 590
PagI	TCATGA	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	368
PflFI	GACNNNGTC	2 cut(s)	16, 263
PkrI	GCNGC	9 cut(s)	63, 66, 161, 291, 316, 388, 438, 441, 554
PleI	GAGTC	2 cut(s)	352, 368
PluTI	GGCGCC	1 cut(s)	315
PpsI	GAGTC	2 cut(s)	352, 368
Psp1406I	AACGTT	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	185
PspFI	CCCAGC	3 cut(s)	217, 251, 346
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	4 cut(s)	101, 313, 449, 615
PspPI	GGNCC	4 cut(s)	99, 178, 183, 220
PsuI	RGATCY	1 cut(s)	634
PsyI	GACNNNGTC	2 cut(s)	16, 263
RsaI	GTAC	3 cut(s)	296, 308, 600
RsaNI	GTAC	3 cut(s)	295, 307, 599
RseI	CAYNNNNRTG	1 cut(s)	302
Rsr2I	CGGWCCG	1 cut(s)	178
RsrII	CGGWCCG	1 cut(s)	178
SacII	CCGCGG	1 cut(s)	160
SatI	GCNGC	9 cut(s)	62, 65, 160, 290, 315, 387, 437, 440, 553
Sau3AI	GATC	3 cut(s)	54, 393, 634
Sau96I	GGNCC	4 cut(s)	99, 178, 183, 220
SchI	GAGTC	2 cut(s)	352, 368
ScrFI	CCNGG	2 cut(s)	182, 187
SetI	ASST	7 cut(s)	147, 267, 291, 344, 479, 513, 571
SfoI	GGCGCC	1 cut(s)	313
Sfr303I	CCGCGG	1 cut(s)	160
SgrBI	CCGCGG	1 cut(s)	160
SinI	GGWCC	2 cut(s)	99, 178
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	3 cut(s)	27, 403, 545
SsiI	CCGC	8 cut(s)	62, 65, 148, 157, 159, 315, 326, 386
SspDI	GGCGCC	1 cut(s)	311
SspMI	CTAG	1 cut(s)	618
StyD4I	CCNGG	2 cut(s)	180, 185
TaaI	ACNGT	1 cut(s)	539
TaiI	ACGT	2 cut(s)	267, 479
TaqI	TCGA	1 cut(s)	195
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	3 cut(s)	27, 403, 545
TatI	WGTACW	1 cut(s)	598
TauI	GCSGC	5 cut(s)	64, 67, 162, 317, 389
TfiI	GAWTC	1 cut(s)	368
TseI	GCWGC	4 cut(s)	289, 436, 439, 552
TspDTI	ATGAA	1 cut(s)	229
TspGWI	ACGGA	1 cut(s)	314
Tth111I	GACNNNGTC	2 cut(s)	16, 263
VpaK11BI	GGWCC	2 cut(s)	99, 178
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.