Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007876

Physical Location & Seq

Genomic Coordinates Reverse (-)

18689361 .. 18690857

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGACAAATCTGAAAAAATCGCTTACGCTTCAGTTTTGTCTCTTCTCTCTCTTTCTCTTCTTCTTCTCATAATCTTCCTCTTCTTATTATGCAGAAAAAAACCAAACCGGTCCGACGACGAATATCTTCTTCCAGAAACCAAACCGGCTGGTCTTTCTTATTCGTTAACCGAATTAGACTCAGCAACCGACGGATTTAACCAACGACGAATCATCGGTTCTGGTCGGTTAGGAACGGTTTACGCTGCGATTATTCCAGATCATAAAAATCTCGTCGCGGTTAAAAGAATACATCCCGGTTTGGTTTTGAGTAAACCGGGTTTCGGTTTTTCCACGGTTATTAAATCGCTTTCTTCTTCTCATCATCCAAACGTCGTTTCGATTTTAGGATTCTCAGAAGCTCCCGGAGAAAGAATCGTCGTAACAGAATTCGTCGGAGAAGGTAAGAGCTTGAGTGATCACTTACACGGAGGTTCCAATTCAGCGACTGCGGTTGAATTTGGATGGAAAACGCGTTTTAAAATCGCGGCGGGAGCAGCGAGAGGATTGGAGTATTTACACGAAATCGCAAACCCTAGAATCGTTCACGGTAGATTCACATCATCGAATGTTTTGGTAGACGAGAAATCAACGGCTAAGATTTGCGATTACGGATTTGGGTTTTTGATTCCGATTGAAAAATCTGGGATTTTTGGGTATATAGAAGAAGGTTATTGCAAAGAGAGTGATGTGTATGGATACGGCGTCGTTTTAATGGAGATTTTGAGTGGAAGAAGAAGTGAAAATGGATTGATTGTGAAATGGGCAACTCCATTGATTAAAGAACAGAGATTTGCTGAGCTTTTAGATCCGAGGATTGTTGTTCAAAGTGAGATCAAGAGTTTGGTAATAAGATTAGCGAAGGTTGCTTTAGCTTGTGTCGGGAATTCACGGAGGAGTCGACCGTCGATTTCTGAAGTGGCGGCGATTTTGAATAGTTTGGAGAGGGAAGGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

332

Amino Acids

36.23

Weight (kDa)

8.9

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	66 - 262	7.4e-21	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	68 - 219	1.5e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46080
fragaria_vesca	FvH4_3g08510
malus_domestica	MD05G1309800.v1.1 MD10G1288400.v1.1
prunus_persica	Prupe.4G053200_v2.0.a1
pyrus_communis	pycom05g28620
rosa_chinensis	RchiOBHm_Chr5g0009231 RchiOBHm_Chr5g0009321
rosa_laevigata	RLG00000031651
rosa_multiflora	Rmu_co8140636.1_g000001 Rmu_sc0006233.1_g000002 Rmu_sc0006233.1_g000028
rosa_roxburghii	Rroxscaffold_1G00066770 Rroxscaffold_1G00067470
rosa_rugosa	Rorug04G0441700 Rorug04G0441800 Rorug04G0441800
rosa_samantha	Rh5AG072500 Rh5BG068800 Rh5CG081400 Rh5DG068100 Rh5DG069100
rosa_wichuraiana	Rw5G006680 Rw5G006770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	618, 940
AccII	CGCG	3 cut(s)	278, 514, 527
AciI	CCGC	5 cut(s)	278, 491, 527, 530, 962
AclWI	GGATC	1 cut(s)	842
AcsI	RAATTY	3 cut(s)	428, 497, 925
AcuI	CTGAAG	2 cut(s)	15, 975
AcyI	GRCGYC	1 cut(s)	744
AfiI	CCNNNNNNNGG	1 cut(s)	323
AflIII	ACRYGT	1 cut(s)	512
AgeI	ACCGGT	1 cut(s)	108
AgsI	TTSAA	4 cut(s)	497, 677, 866, 973
AjuI	GAANNNNNNNTTGG	2 cut(s)	361, 393
AluBI	AGCT	4 cut(s)	401, 450, 841, 914
AluI	AGCT	4 cut(s)	401, 450, 841, 914
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	842
AlwNI	CAGNNNCTG	1 cut(s)	488
ApeKI	GCWGC	2 cut(s)	245, 536
ApoI	RAATTY	3 cut(s)	428, 497, 925
AsiGI	ACCGGT	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	111
AsuC2I	CCSGG	3 cut(s)	297, 318, 405
AvaII	GGWCC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	232, 548
BccI	CCATC	1 cut(s)	498
BceAI	ACGGC	2 cut(s)	648, 757
BciVI	GTATCC	1 cut(s)	731
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	3 cut(s)	297, 318, 405
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	576
BfuI	GTATCC	1 cut(s)	731
BisI	GCNGC	4 cut(s)	246, 528, 537, 963
BlpI	GCTNAGC	1 cut(s)	837
BlsI	GCNGC	4 cut(s)	247, 529, 538, 964
Bme1390I	CCNGG	3 cut(s)	297, 318, 405
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	3 cut(s)	297, 318, 405
Bpu1102I	GCTNAGC	1 cut(s)	837
BpuEI	CTTGAG	1 cut(s)	472
BpuMI	CCSGG	3 cut(s)	297, 318, 405
BsaBI	GATNNNNATC	1 cut(s)	598
BsaHI	GRCGYC	1 cut(s)	744
BsaJI	CCNNGG	2 cut(s)	333, 851
BsaWI	WCCGGW	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse118I	RCCGGY	2 cut(s)	108, 145
Bse8I	GATNNNNATC	1 cut(s)	598
BseDI	CCNNGG	2 cut(s)	333, 851
BseGI	GGATG	3 cut(s)	292, 364, 509
BseJI	GATNNNNATC	1 cut(s)	598
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	3 cut(s)	195, 408, 828
BseRI	GAGGAG	1 cut(s)	949
BseXI	GCAGC	2 cut(s)	232, 548
Bsh1236I	CGCG	3 cut(s)	278, 514, 527
Bsh1285I	CGRYCG	1 cut(s)	944
BshTI	ACCGGT	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	944
BsiSI	CCGG	5 cut(s)	109, 146, 297, 317, 405
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	45
Bsp143I	GATC	4 cut(s)	259, 457, 847, 873
Bsp1720I	GCTNAGC	1 cut(s)	837
BspACI	CCGC	5 cut(s)	278, 491, 527, 530, 962
BspCNI	CTCAG	3 cut(s)	194, 407, 829
BspFNI	CGCG	3 cut(s)	278, 514, 527
BspLI	GGNNCC	1 cut(s)	475
BspPI	GGATC	1 cut(s)	842
BsrFI	RCCGGY	2 cut(s)	108, 145
BssAI	RCCGGY	2 cut(s)	108, 145
BssECI	CCNNGG	2 cut(s)	333, 851
BssMI	GATC	4 cut(s)	259, 457, 847, 873
BssNI	GRCGYC	1 cut(s)	744
Bst4CI	ACNGT	4 cut(s)	238, 337, 590, 945
Bst6I	CTCTTC	3 cut(s)	48, 63, 86
BstACI	GRCGYC	1 cut(s)	744
BstDEI	CTNAG	4 cut(s)	181, 394, 636, 837
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	3 cut(s)	292, 364, 509
BstFNI	CGCG	3 cut(s)	278, 514, 527
BstKTI	GATC	4 cut(s)	262, 460, 850, 876
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	4 cut(s)	259, 457, 847, 873
BstMCI	CGRYCG	1 cut(s)	944
BstMWI	GCNNNNNNNGC	3 cut(s)	533, 536, 905
BstSCI	CCNGG	3 cut(s)	295, 316, 403
BstUI	CGCG	3 cut(s)	278, 514, 527
BstV1I	GCAGC	2 cut(s)	232, 548
BstX2I	RGATCY	1 cut(s)	847
BstYI	RGATCY	1 cut(s)	847
BsuI	GTATCC	1 cut(s)	731
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	3 cut(s)	292, 364, 509
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr10I	RCCGGY	2 cut(s)	108, 145
Cfr13I	GGNCC	1 cut(s)	111
CpoI	CGGWCCG	1 cut(s)	111
CseI	GACGC	1 cut(s)	733
CspAI	ACCGGT	1 cut(s)	108
CspI	CGGWCCG	1 cut(s)	111
CviJI	RGCY	6 cut(s)	149, 401, 450, 635, 841, 914
CviKI_1	RGCY	6 cut(s)	149, 401, 450, 635, 841, 914
DdeI	CTNAG	4 cut(s)	181, 394, 636, 837
DpnI	GATC	4 cut(s)	261, 459, 849, 875
DpnII	GATC	4 cut(s)	259, 457, 847, 873
DraI	TTTAAA	1 cut(s)	520
Eam1104I	CTCTTC	3 cut(s)	48, 63, 86
EarI	CTCTTC	3 cut(s)	48, 63, 86
Eco47I	GGWCC	1 cut(s)	111
Eco57I	CTGAAG	2 cut(s)	15, 975
EcoRI	GAATTC	2 cut(s)	428, 925
FaiI	YATR	6 cut(s)	71, 91, 264, 699, 701, 735
FauI	CCCGC	1 cut(s)	523
FbaI	TGATCA	1 cut(s)	457
FblI	GTMKAC	2 cut(s)	618, 940
Fnu4HI	GCNGC	4 cut(s)	246, 528, 537, 963
FokI	GGATG	3 cut(s)	279, 351, 516
Fsp4HI	GCNGC	4 cut(s)	246, 528, 537, 963
FspBI	CTAG	1 cut(s)	576
GluI	GCNGC	4 cut(s)	246, 528, 537, 963
HapII	CCGG	5 cut(s)	109, 146, 297, 317, 405
HgaI	GACGC	1 cut(s)	733
Hin1I	GRCGYC	1 cut(s)	744
HincII	GTYRAC	2 cut(s)	168, 941
HindII	GTYRAC	2 cut(s)	168, 941
HinfI	GANTC	8 cut(s)	179, 210, 390, 414, 579, 594, 667, 937
HpaI	GTTAAC	1 cut(s)	168
HpaII	CCGG	5 cut(s)	109, 146, 297, 317, 405
Hpy166II	GTNNAC	6 cut(s)	168, 241, 314, 586, 619, 941
Hpy188I	TCNGA	7 cut(s)	13, 115, 397, 437, 672, 852, 955
Hpy188III	TCNNGA	4 cut(s)	134, 257, 877, 922
Hpy8I	GTNNAC	6 cut(s)	168, 241, 314, 586, 619, 941
HpyAV	CCTTC	4 cut(s)	434, 701, 895, 983
HpyCH4III	ACNGT	4 cut(s)	238, 337, 590, 945
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	2 cut(s)	93, 717
HpyF10VI	GCNNNNNNNGC	3 cut(s)	533, 536, 905
HpyF3I	CTNAG	4 cut(s)	181, 394, 636, 837
HpySE526I	ACGT	1 cut(s)	372
Hsp92I	GRCGYC	1 cut(s)	744
Ksp22I	TGATCA	1 cut(s)	457
KspAI	GTTAAC	1 cut(s)	168
Kzo9I	GATC	4 cut(s)	259, 457, 847, 873
LmnI	GCTCC	2 cut(s)	406, 533
Lsp1109I	GCAGC	2 cut(s)	232, 548
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	4 cut(s)	261, 459, 849, 875
MboI	GATC	4 cut(s)	259, 457, 847, 873
MflI	RGATCY	1 cut(s)	847
MluCI	AATT	5 cut(s)	173, 428, 478, 497, 925
MluI	ACGCGT	1 cut(s)	512
MlyI	GAGTC	2 cut(s)	173, 946
MmeI	TCCRAC	2 cut(s)	138, 415
MnlI	CCTC	7 cut(s)	89, 464, 536, 846, 927, 978, 986
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	7 cut(s)	167, 198, 282, 342, 519, 752, 819
MspI	CCGG	5 cut(s)	109, 146, 297, 317, 405
MspR9I	CCNGG	3 cut(s)	297, 318, 405
MvnI	CGCG	3 cut(s)	278, 514, 527
MwoI	GCNNNNNNNGC	3 cut(s)	533, 536, 905
NciI	CCSGG	3 cut(s)	297, 318, 405
NdeII	GATC	4 cut(s)	259, 457, 847, 873
NlaIV	GGNNCC	1 cut(s)	475
PcsI	WCGNNNNNNNCGW	1 cut(s)	937
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	6 cut(s)	210, 390, 414, 579, 594, 667
PfoI	TCCNGGA	1 cut(s)	403
PinAI	ACCGGT	1 cut(s)	108
PkrI	GCNGC	4 cut(s)	247, 529, 538, 964
PleI	GAGTC	2 cut(s)	173, 945
PpsI	GAGTC	2 cut(s)	173, 945
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	1 cut(s)	111
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	847
Rsr2I	CGGWCCG	1 cut(s)	111
RsrII	CGGWCCG	1 cut(s)	111
SalI	GTCGAC	1 cut(s)	939
SaqAI	TTAA	7 cut(s)	167, 198, 282, 342, 519, 752, 819
SatI	GCNGC	4 cut(s)	246, 528, 537, 963
Sau3AI	GATC	4 cut(s)	259, 457, 847, 873
Sau96I	GGNCC	1 cut(s)	111
SchI	GAGTC	2 cut(s)	173, 946
ScrFI	CCNGG	3 cut(s)	297, 318, 405
SetI	ASST	9 cut(s)	375, 403, 445, 452, 475, 712, 843, 906, 916
SinI	GGWCC	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse9I	AATT	5 cut(s)	173, 428, 478, 497, 925
SsiI	CCGC	5 cut(s)	278, 491, 527, 530, 962
SspMI	CTAG	1 cut(s)	576
StyD4I	CCNGG	3 cut(s)	295, 316, 403
TaaI	ACNGT	4 cut(s)	238, 337, 590, 945
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	4 cut(s)	380, 605, 940, 947
TasI	AATT	5 cut(s)	173, 428, 478, 497, 925
TauI	GCSGC	2 cut(s)	530, 965
TfiI	GAWTC	6 cut(s)	210, 390, 414, 579, 594, 667
Tru1I	TTAA	7 cut(s)	167, 198, 282, 342, 519, 752, 819
Tru9I	TTAA	7 cut(s)	167, 198, 282, 342, 519, 752, 819
TseI	GCWGC	2 cut(s)	245, 536
TspGWI	ACGGA	4 cut(s)	207, 483, 666, 946
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	3 cut(s)	428, 497, 925
XmiI	GTMKAC	2 cut(s)	618, 940
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.