Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8140636.1

Orthogroup ID

OG0007876

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 511

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8140636.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atggtttgcttggatttttacttgcatcaaaacccagatggggcttctctgttggattggaaccacaggcttaaaattgcagcaggggcagcaagagggcttcagtacttgcatcaaggagttgctccaaatattgttcatggatgtgtgaaggcttcaaatatcttgattgatgtgaaattctgtgctagggtttgtgattatggtctatcatttttggcaccaaaagagaagaggggtctagttggtcatgtggatgatgagtattggagaggaggtggtgtgtgcaaagagagcgatatgtttggttttggggtggttctgttggaacttctgagtgggagacgatgtgatgaagggtttctagtgaaatgggcaatgccattgattcaggagatgaggtttagtgagtttttggacccaagacttgttattcctcatgacattaggcctcttgtcagattgaccaaagttgcctcgacttgtgttagtaattccagaaagagcaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

170

Amino Acids

19.06

Weight (kDa)

8.71

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46080
fragaria_vesca	FvH4_3g08510
malus_domestica	MD05G1309800.v1.1 MD10G1288400.v1.1
prunus_persica	Prupe.4G053200_v2.0.a1
pyrus_communis	pycom05g28620
rosa_chinensis	RchiOBHm_Chr5g0009231 RchiOBHm_Chr5g0009321
rosa_laevigata	RLG00000031651
rosa_multiflora	Rmu_co8140636.1_g000001 Rmu_sc0006233.1_g000002 Rmu_sc0006233.1_g000028
rosa_roxburghii	Rroxscaffold_1G00066770 Rroxscaffold_1G00067470
rosa_rugosa	Rorug04G0441700 Rorug04G0441800 Rorug04G0441800
rosa_samantha	Rh5AG072500 Rh5BG068800 Rh5CG081400 Rh5DG068100 Rh5DG069100
rosa_wichuraiana	Rw5G006680 Rw5G006770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	337
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	2 cut(s)	80, 89
ApoI	RAATTY	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	92, 101
BccI	CCATC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	337
BfaI	CTAG	3 cut(s)	189, 242, 365
BisI	GCNGC	2 cut(s)	81, 90
BlsI	GCNGC	2 cut(s)	82, 91
BmcAI	AGTACT	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	3 cut(s)	62, 222, 420
BmsI	GCATC	2 cut(s)	34, 121
BsaXI	ACNNNNNCTCC	8 cut(s)	262, 267, 292, 297, 334, 364, 386, 416
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	384
BseGI	GGATG	2 cut(s)	149, 262
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	92, 101
BshFI	GGCC	1 cut(s)	451
BshNI	GGYRCC	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	337
BsmBI	CGTCTC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	451
BspANI	GGCC	1 cut(s)	451
BspCNI	CTCAG	1 cut(s)	327
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	3 cut(s)	62, 222, 420
BspT107I	GGYRCC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	384
Bst6I	CTCTTC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	335
BstF5I	GGATG	2 cut(s)	149, 262
BstMAI	GTCTC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 89, 294
BstV1I	GCAGC	2 cut(s)	92, 101
BsuRI	GGCC	1 cut(s)	451
BtsCI	GGATG	2 cut(s)	149, 262
CciI	TCATGA	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	3 cut(s)	140, 251, 440
CviJI	RGCY	5 cut(s)	44, 70, 100, 155, 451
CviKI_1	RGCY	5 cut(s)	44, 70, 100, 155, 451
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco147I	AGGCCT	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	86
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	3 cut(s)	143, 254, 443
FaiI	YATR	5 cut(s)	141, 204, 252, 302, 441
FatI	CATG	3 cut(s)	139, 250, 439
Fnu4HI	GCNGC	2 cut(s)	81, 90
FokI	GGATG	2 cut(s)	156, 269
Fsp4HI	GCNGC	2 cut(s)	81, 90
FspBI	CTAG	3 cut(s)	189, 242, 365
GluI	GCNGC	2 cut(s)	81, 90
HaeIII	GGCC	1 cut(s)	451
Hin1II	CATG	3 cut(s)	143, 254, 443
HinfI	GANTC	1 cut(s)	388
Hpy188I	TCNGA	2 cut(s)	336, 461
Hpy188III	TCNNGA	4 cut(s)	166, 392, 440, 498
HpyAV	CCTTC	2 cut(s)	145, 350
HpyCH4V	TGCA	4 cut(s)	25, 80, 112, 288
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 89, 294
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	3 cut(s)	143, 254, 443
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	4 cut(s)	48, 52, 69, 377
Lsp1109I	GCAGC	2 cut(s)	92, 101
LweI	GCATC	2 cut(s)	34, 121
MaeI	CTAG	3 cut(s)	189, 242, 365
MboII	GAAGA	1 cut(s)	244
MluCI	AATT	3 cut(s)	75, 179, 493
MmeI	TCCRAC	2 cut(s)	33, 306
MnlI	CCTC	8 cut(s)	89, 228, 266, 269, 393, 447, 462, 487
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	2 cut(s)	144, 255
MwoI	GCNNNNNNNGC	3 cut(s)	86, 89, 294
NlaIII	CATG	3 cut(s)	143, 254, 443
NlaIV	GGNNCC	3 cut(s)	62, 222, 420
PagI	TCATGA	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	388
PkrI	GCNGC	2 cut(s)	82, 91
PspN4I	GGNNCC	3 cut(s)	62, 222, 420
PspPI	GGNCC	1 cut(s)	418
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
RseI	CAYNNNNRTG	2 cut(s)	144, 255
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	2 cut(s)	81, 90
Sau96I	GGNCC	1 cut(s)	418
ScaI	AGTACT	1 cut(s)	107
SetI	ASST	2 cut(s)	280, 404
SfaNI	GCATC	2 cut(s)	34, 121
SinI	GGWCC	1 cut(s)	418
SmiMI	CAYNNNNRTG	2 cut(s)	144, 255
Sse9I	AATT	3 cut(s)	75, 179, 493
SseBI	AGGCCT	1 cut(s)	451
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	3 cut(s)	189, 242, 365
StuI	AGGCCT	1 cut(s)	451
TaqI	TCGA	1 cut(s)	479
TasI	AATT	3 cut(s)	75, 179, 493
TatI	WGTACW	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseI	GCWGC	2 cut(s)	80, 89
TspDTI	ATGAA	2 cut(s)	128, 369
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	3 cut(s)	189, 242, 365
ZrmI	AGTACT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.