Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006233.1

Orthogroup ID

OG0007876

Physical Location & Seq

Genomic Coordinates Reverse (-)

6115 .. 7309

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006233.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atgaatcacagtgaccatgttcatattgcctattactttgtcatctccctcctcaccacgtctcttattgttctcggtcttgtgcttcttctgaccctcctctgcaagaggaaacagaacactgatgatcaatctgaagaaactgtaatcccagctaagatttgtgccagagtataccctttaaccgatattgatgccgccacagatggcttcaaccgcagaagaatcgtcggtgagggccgtttaggaactgtgtatgctgcaatattcgaaaagggggagatagcggccgtgaagagaattcatccgaggcttgtgttgggaaatattggttttgggttttcaagaacacttggctctctctcattggctcaacaccccaatgtagtgcccattgttgggtactcagaagcaccaggtgagagaatcattgtcatggagtttgtaggtatggtttgcttggatttttacttgcatcaaaacccagatggggcttctctgttggattggaaccacaggcttaaaattgcagcaggggcagcaagagggcttcaggtttgtgattatggtctatcatttttggcaccaaaagagaagaggggtctagttggttatgtggatgatgagtattggagaggaggtggtgtgtgcaaagagagcgatatgtttggttttggggtggttctgttggaacttctgagtgggagacgatgtgatgaagggtttctagtgaaatgggcaatgccattgattcaggagatgaggtttataattccagaaagagcagaccttcaattagtcaagtcacaactatcctcaacaatttggagattgattcaacgtgatcacatttttctgcattatttgccggttgttccacatcaaagtcactgtcaatatgaacttgtattaggaaaaggttgcaatccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

310

Amino Acids

34.68

Weight (kDa)

7.15

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46080
fragaria_vesca	FvH4_3g08510
malus_domestica	MD05G1309800.v1.1 MD10G1288400.v1.1
prunus_persica	Prupe.4G053200_v2.0.a1
pyrus_communis	pycom05g28620
rosa_chinensis	RchiOBHm_Chr5g0009231 RchiOBHm_Chr5g0009321
rosa_laevigata	RLG00000031651
rosa_multiflora	Rmu_co8140636.1_g000001 Rmu_sc0006233.1_g000002 Rmu_sc0006233.1_g000028
rosa_roxburghii	Rroxscaffold_1G00066770 Rroxscaffold_1G00067470
rosa_rugosa	Rorug04G0441700 Rorug04G0441800 Rorug04G0441800
rosa_samantha	Rh5AG072500 Rh5BG068800 Rh5CG081400 Rh5DG068100 Rh5DG069100
rosa_wichuraiana	Rw5G006680 Rw5G006770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	770
AccB1I	GGYRCC	1 cut(s)	583
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	3 cut(s)	198, 217, 287
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	300
AcuI	CTGAAG	2 cut(s)	156, 536
AdeI	CACNNNGTG	1 cut(s)	419
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	3 cut(s)	398, 399, 490
AgsI	TTSAA	4 cut(s)	214, 345, 794, 839
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	415
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw26I	GTCTC	2 cut(s)	66, 700
AoxI	GGCC	2 cut(s)	238, 288
ApeKI	GCWGC	3 cut(s)	260, 530, 539
ApoI	RAATTY	1 cut(s)	300
ArsI	GACNNNNNNTTYG	2 cut(s)	877, 909
Asp700I	GAANNNNTTC	1 cut(s)	723
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	3 cut(s)	46, 245, 431
AsuII	TTCGAA	1 cut(s)	270
BaeGI	GKGCMC	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	583
BbvI	GCAGC	3 cut(s)	247, 542, 551
BccI	CCATC	2 cut(s)	200, 482
BceAI	ACGGC	2 cut(s)	225, 275
BcgI	CGANNNNNNTGC	4 cut(s)	176, 208, 210, 242
BciT130I	CCWGG	1 cut(s)	417
BclI	TGATCA	2 cut(s)	127, 844
BcoDI	GTCTC	2 cut(s)	66, 700
BfaI	CTAG	2 cut(s)	605, 728
BisI	GCNGC	5 cut(s)	198, 261, 288, 531, 540
BlsI	GCNGC	5 cut(s)	199, 262, 289, 532, 541
Bme1390I	CCNGG	1 cut(s)	417
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	512, 585
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	2 cut(s)	184, 484
Bpu14I	TTCGAA	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	308
BsaXI	ACNNNNNCTCC	8 cut(s)	625, 630, 655, 660, 697, 727, 749, 779
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 399, 490
Bse118I	RCCGGY	1 cut(s)	868
Bse3DI	GCAATG	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	2 cut(s)	304, 625
BseLI	CCNNNNNNNGG	3 cut(s)	398, 399, 490
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	2 cut(s)	420, 689
BseRI	GAGGAG	3 cut(s)	41, 89, 651
BseSI	GKGCMC	1 cut(s)	393
BseX3I	CGGCCG	1 cut(s)	288
BseXI	GCAGC	3 cut(s)	247, 542, 551
BseYI	CCCAGC	1 cut(s)	151
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	240, 290
BshNI	GGYRCC	1 cut(s)	583
BsiEI	CGRYCG	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	869
BslI	CCNNNNNNNGG	3 cut(s)	398, 399, 490
BsmAI	GTCTC	2 cut(s)	66, 700
BsmBI	CGTCTC	2 cut(s)	66, 700
BsnI	GGCC	2 cut(s)	240, 290
Bsp119I	TTCGAA	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	2 cut(s)	127, 844
BspACI	CCGC	3 cut(s)	198, 217, 287
BspANI	GGCC	2 cut(s)	240, 290
BspCNI	CTCAG	2 cut(s)	419, 690
BspLI	GGNNCC	2 cut(s)	512, 585
BspT104I	TTCGAA	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	583
BsrDI	GCAATG	1 cut(s)	747
BsrFI	RCCGGY	1 cut(s)	868
BssAI	RCCGGY	1 cut(s)	868
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	2 cut(s)	127, 844
BssNAI	GTATAC	1 cut(s)	175
Bst1107I	GTATAC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	4 cut(s)	11, 145, 253, 893
Bst6I	CTCTTC	2 cut(s)	290, 590
BstAPI	GCANNNNNTGC	1 cut(s)	865
BstBI	TTCGAA	1 cut(s)	270
BstDEI	CTNAG	4 cut(s)	156, 406, 698, 930
BstF5I	GGATG	2 cut(s)	304, 625
BstKTI	GATC	2 cut(s)	130, 847
BstMAI	GTCTC	2 cut(s)	66, 700
BstMBI	GATC	2 cut(s)	127, 844
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	5 cut(s)	216, 536, 539, 657, 865
BstNI	CCWGG	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	415
BstSLI	GKGCMC	1 cut(s)	393
BstV1I	GCAGC	3 cut(s)	247, 542, 551
BstZ17I	GTATAC	1 cut(s)	175
BstZI	CGGCCG	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	240, 290
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	304, 625
BtsIMutI	CAGTG	3 cut(s)	16, 120, 889
Cfr10I	RCCGGY	1 cut(s)	868
Cfr13I	GGNCC	1 cut(s)	238
CsiI	ACCWGGT	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	2 cut(s)	17, 436
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	4 cut(s)	156, 406, 698, 930
DpnI	GATC	2 cut(s)	129, 846
DpnII	GATC	2 cut(s)	127, 844
DraIII	CACNNNGTG	1 cut(s)	419
EaeI	YGGCCR	1 cut(s)	288
EagI	CGGCCG	1 cut(s)	288
Eam1104I	CTCTTC	2 cut(s)	290, 590
EarI	CTCTTC	2 cut(s)	290, 590
EclXI	CGGCCG	1 cut(s)	288
Eco52I	CGGCCG	1 cut(s)	288
Eco57I	CTGAAG	2 cut(s)	156, 536
EcoRI	GAATTC	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	415
Esp3I	CGTCTC	2 cut(s)	66, 700
FaeI	CATG	2 cut(s)	20, 439
FatI	CATG	2 cut(s)	16, 435
FbaI	TGATCA	2 cut(s)	127, 844
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	5 cut(s)	198, 261, 288, 531, 540
FokI	GGATG	2 cut(s)	291, 632
Fsp4HI	GCNGC	5 cut(s)	198, 261, 288, 531, 540
FspBI	CTAG	2 cut(s)	605, 728
GluI	GCNGC	5 cut(s)	198, 261, 288, 531, 540
GsaI	CCCAGC	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	240, 290
HapII	CCGG	1 cut(s)	869
Hin1II	CATG	2 cut(s)	20, 439
HinfI	GANTC	5 cut(s)	4, 225, 426, 751, 835
HpaII	CCGG	1 cut(s)	869
HphI	GGTGA	3 cut(s)	46, 245, 431
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	5 cut(s)	93, 136, 309, 409, 699
Hpy188III	TCNNGA	3 cut(s)	345, 755, 776
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	713, 800
HpyCH4III	ACNGT	4 cut(s)	11, 145, 253, 893
HpyCH4IV	ACGT	2 cut(s)	59, 841
HpyCH4V	TGCA	7 cut(s)	105, 263, 475, 530, 651, 859, 924
HpyF10VI	GCNNNNNNNGC	5 cut(s)	216, 536, 539, 657, 865
HpyF3I	CTNAG	4 cut(s)	156, 406, 698, 930
HpySE526I	ACGT	2 cut(s)	59, 841
Hsp92II	CATG	2 cut(s)	20, 439
Ksp22I	TGATCA	2 cut(s)	127, 844
Kzo9I	GATC	2 cut(s)	127, 844
Lsp1109I	GCAGC	3 cut(s)	247, 542, 551
LweI	GCATC	2 cut(s)	184, 484
MabI	ACCWGGT	1 cut(s)	415
MaeI	CTAG	2 cut(s)	605, 728
MaeII	ACGT	2 cut(s)	59, 841
MaeIII	GTNAC	3 cut(s)	11, 804, 887
MalI	GATC	2 cut(s)	129, 846
MboI	GATC	2 cut(s)	127, 844
MboII	GAAGA	5 cut(s)	80, 149, 234, 307, 607
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	5 cut(s)	300, 525, 771, 794, 822
MmeI	TCCRAC	2 cut(s)	483, 669
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	2 cut(s)	182, 522
MslI	CAYNNNNRTG	2 cut(s)	381, 434
MspI	CCGG	1 cut(s)	869
MspR9I	CCNGG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	5 cut(s)	216, 536, 539, 657, 865
NdeII	GATC	2 cut(s)	127, 844
NlaIII	CATG	2 cut(s)	20, 439
NlaIV	GGNNCC	2 cut(s)	512, 585
NmuCI	GTSAC	3 cut(s)	11, 804, 887
NspV	TTCGAA	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	5 cut(s)	4, 225, 426, 751, 835
PkrI	GCNGC	5 cut(s)	199, 262, 289, 532, 541
PsiI	TTATAA	1 cut(s)	770
Psp6I	CCWGG	1 cut(s)	415
PspFI	CCCAGC	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	512, 585
PspPI	GGNCC	1 cut(s)	238
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
RseI	CAYNNNNRTG	2 cut(s)	381, 434
SaqAI	TTAA	2 cut(s)	182, 522
SatI	GCNGC	5 cut(s)	198, 261, 288, 531, 540
Sau3AI	GATC	2 cut(s)	127, 844
Sau96I	GGNCC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	417
SduI	GDGCHC	1 cut(s)	393
SexAI	ACCWGGT	1 cut(s)	415
SfaNI	GCATC	2 cut(s)	184, 484
SfuI	TTCGAA	1 cut(s)	270
SmiMI	CAYNNNNRTG	2 cut(s)	381, 434
Sse9I	AATT	5 cut(s)	300, 525, 771, 794, 822
SsiI	CCGC	3 cut(s)	198, 217, 287
SspI	AATATT	2 cut(s)	267, 328
SspMI	CTAG	2 cut(s)	605, 728
StyD4I	CCNGG	1 cut(s)	415
TaaI	ACNGT	4 cut(s)	11, 145, 253, 893
TaiI	ACGT	2 cut(s)	62, 844
TaqI	TCGA	1 cut(s)	270
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	5 cut(s)	300, 525, 771, 794, 822
TauI	GCSGC	2 cut(s)	200, 290
TfiI	GAWTC	5 cut(s)	4, 225, 426, 751, 835
Tru1I	TTAA	2 cut(s)	182, 522
Tru9I	TTAA	2 cut(s)	182, 522
TscAI	CASTG	3 cut(s)	16, 127, 896
TseFI	GTSAC	3 cut(s)	11, 804, 887
TseI	GCWGC	3 cut(s)	260, 530, 539
Tsp45I	GTSAC	3 cut(s)	11, 804, 887
TspDTI	ATGAA	5 cut(s)	11, 17, 293, 732, 915
TspRI	CASTG	3 cut(s)	16, 127, 896
XapI	RAATTY	1 cut(s)	300
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	2 cut(s)	605, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.