Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007876

Physical Location & Seq

Genomic Coordinates Reverse (-)

5889153 .. 5889734

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG068100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGTTTGTAGGTATGGTTTGCTTGGATTTTTACTTGCATCAAAACCCAGATGGGGCTTCTCTGTTGGATTGGAACCGCAGGCTTAAAATTGCAGCAGGGGCAGCAAGAGGGCTTCAGTACTTGCATCAAGGAGTTGCTCCAAATATTGTTCATGGATTTGTGAAGGCTTCAAATATCTTGATTGATGTGAAATTCTGTGCTAGGGTTTGTGATTATGGTCTATCATTTTTGGCACCAAAAGAGAAGAGGGGTCTAGTTGGTCATGTGGATGATGAGTATTGGAGAGGAGGTGGTGTGTGCAAAGAGAGCGATATGTTTGGTTTTGGGGTGGTTCTGTTGGAACTTCTGAGTGGGAGACGATGTGATGAAGGGTTTCTAGTGAAATGGGCAATGCCATTGATTCAGGAGATGAGGTTTACTGAGTTTTTGGACCCAAGACTTGTTATTCCTCATGACATTAGGCCTCTTGTCAGATTGACCAAAGTTGCCTCGACTTGTGTTAGTAATTCCAGAAAGAGAAGACGTTCAATTAGTCAAGTTGCAACTATCCTCAACAATTTGGAGATAGATTCAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

193

Amino Acids

21.72

Weight (kDa)

8.78

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 183	2.8e-15	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	28 - 122	2.6e-10	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0007876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46080
fragaria_vesca	FvH4_3g08510
malus_domestica	MD05G1309800.v1.1 MD10G1288400.v1.1
prunus_persica	Prupe.4G053200_v2.0.a1
pyrus_communis	pycom05g28620
rosa_chinensis	RchiOBHm_Chr5g0009231 RchiOBHm_Chr5g0009321
rosa_laevigata	RLG00000031651
rosa_multiflora	Rmu_co8140636.1_g000001 Rmu_sc0006233.1_g000002 Rmu_sc0006233.1_g000028
rosa_roxburghii	Rroxscaffold_1G00066770 Rroxscaffold_1G00067470
rosa_rugosa	Rorug04G0441700 Rorug04G0441800 Rorug04G0441800
rosa_samantha	Rh5AG072500 Rh5BG068800 Rh5CG081400 Rh5DG068100 Rh5DG069100
rosa_wichuraiana	Rw5G006680 Rw5G006770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AciI	CCGC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	3 cut(s)	174, 531, 576
Alw26I	GTCTC	1 cut(s)	352
AoxI	GGCC	1 cut(s)	464
ApeKI	GCWGC	2 cut(s)	95, 104
ApoI	RAATTY	1 cut(s)	194
Asp700I	GAANNNNTTC	2 cut(s)	375, 526
AspS9I	GGNCC	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	529
BbvI	GCAGC	2 cut(s)	107, 116
BccI	CCATC	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	3 cut(s)	204, 257, 380
BisI	GCNGC	2 cut(s)	96, 105
BlsI	GCNGC	2 cut(s)	97, 106
BmcAI	AGTACT	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	3 cut(s)	77, 237, 435
BmsI	GCATC	2 cut(s)	49, 136
BpiI	GAAGAC	1 cut(s)	529
BsaXI	ACNNNNNCTCC	8 cut(s)	277, 282, 307, 312, 349, 379, 401, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse3DI	GCAATG	1 cut(s)	399
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	341, 414
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	107, 116
BshFI	GGCC	1 cut(s)	466
BshNI	GGYRCC	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	352
BsmBI	CGTCTC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	466
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	466
BspCNI	CTCAG	2 cut(s)	342, 415
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	3 cut(s)	77, 237, 435
BspT107I	GGYRCC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	399
Bst6I	CTCTTC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	2 cut(s)	350, 423
BstF5I	GGATG	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 104, 309
BstV1I	GCAGC	2 cut(s)	107, 116
BstV2I	GAAGAC	1 cut(s)	529
BsuRI	GGCC	1 cut(s)	466
BtsCI	GGATG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	83
CciI	TCATGA	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	3 cut(s)	155, 266, 455
CviJI	RGCY	5 cut(s)	59, 85, 115, 170, 466
CviKI_1	RGCY	5 cut(s)	59, 85, 115, 170, 466
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	350, 423
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco147I	AGGCCT	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	101
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	3 cut(s)	158, 269, 458
FaiI	YATR	6 cut(s)	17, 156, 219, 267, 317, 456
FatI	CATG	3 cut(s)	154, 265, 454
Fnu4HI	GCNGC	2 cut(s)	96, 105
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	96, 105
FspBI	CTAG	3 cut(s)	204, 257, 380
GluI	GCNGC	2 cut(s)	96, 105
HaeIII	GGCC	1 cut(s)	466
Hin1II	CATG	3 cut(s)	158, 269, 458
HinfI	GANTC	2 cut(s)	403, 572
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	2 cut(s)	351, 476
Hpy188III	TCNNGA	4 cut(s)	181, 407, 455, 513
Hpy8I	GTNNAC	1 cut(s)	420
HpyAV	CCTTC	2 cut(s)	160, 365
HpyCH4IV	ACGT	2 cut(s)	526, 578
HpyCH4V	TGCA	5 cut(s)	40, 95, 127, 303, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 104, 309
HpyF3I	CTNAG	2 cut(s)	350, 423
HpySE526I	ACGT	2 cut(s)	526, 578
Hsp92II	CATG	3 cut(s)	158, 269, 458
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	5 cut(s)	63, 67, 84, 392, 526
Lsp1109I	GCAGC	2 cut(s)	107, 116
LweI	GCATC	2 cut(s)	49, 136
MaeI	CTAG	3 cut(s)	204, 257, 380
MaeII	ACGT	2 cut(s)	526, 578
MboII	GAAGA	2 cut(s)	259, 534
MluCI	AATT	5 cut(s)	90, 194, 508, 531, 559
MmeI	TCCRAC	2 cut(s)	48, 321
MnlI	CCTC	9 cut(s)	104, 243, 281, 284, 408, 462, 477, 502, 563
MroXI	GAANNNNTTC	2 cut(s)	375, 526
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	270
MwoI	GCNNNNNNNGC	3 cut(s)	101, 104, 309
NlaIII	CATG	3 cut(s)	158, 269, 458
NlaIV	GGNNCC	3 cut(s)	77, 237, 435
PagI	TCATGA	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	466
PdmI	GAANNNNTTC	2 cut(s)	375, 526
PfeI	GAWTC	2 cut(s)	403, 572
PkrI	GCNGC	2 cut(s)	97, 106
PspN4I	GGNNCC	3 cut(s)	77, 237, 435
PspPI	GGNCC	1 cut(s)	433
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	96, 105
Sau96I	GGNCC	1 cut(s)	433
ScaI	AGTACT	1 cut(s)	122
SetI	ASST	5 cut(s)	16, 295, 419, 529, 581
SfaNI	GCATC	2 cut(s)	49, 136
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	270
Sse9I	AATT	5 cut(s)	90, 194, 508, 531, 559
SseBI	AGGCCT	1 cut(s)	466
SsiI	CCGC	1 cut(s)	79
SspI	AATATT	1 cut(s)	148
SspMI	CTAG	3 cut(s)	204, 257, 380
StuI	AGGCCT	1 cut(s)	466
TaiI	ACGT	2 cut(s)	529, 581
TaqI	TCGA	1 cut(s)	494
TasI	AATT	5 cut(s)	90, 194, 508, 531, 559
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	2 cut(s)	403, 572
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseI	GCWGC	2 cut(s)	95, 104
TspDTI	ATGAA	2 cut(s)	143, 384
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	1 cut(s)	194
XmnI	GAANNNNTTC	2 cut(s)	375, 526
XspI	CTAG	3 cut(s)	204, 257, 380
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.