Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007876

Physical Location & Seq

Genomic Coordinates Forward (+)

6211960 .. 6215615

Gene Structure 3656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG072500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAATCACAGTGACCATGTTCATATTGCCTATTACTTTGTCATCTCCCTCCTCACCACGTCTCTTATTGTTCTCGGTCTTGTGCTTCTTCTGACCCTCCTCTGCAAGAGGAAACAGAACACTGATGATCAATCTGAAGAAACTGTAATCCCAGCTAAGATTTGTGCCAGAGTATACCCTTTAACCGATATTGATGCCGCCACAGATGGCTTCAACCGCAGAAGAATCGTCGGTGAGGGCCGTTTGGGAACTGTGTATGCTGCAATATTCGAAAAGGGGGAGATAGCGGCCGTGAAGAGAATTCATCCGAGGCTTGTGTTGGGAAATATTGGTTTTGGGTTTTCAAGAACACTTGGCTCTCTCTCATTGGCTCAACACCCCAATGTAGTGCCCATTGTTGGGTACTCAGAAGCACCAGGTGAGAGAATCATTGTCATGGAGTTTGTAGGTATGGTTTGCTTGGATTTTTACTTGCATCAAAACCCAGATGGGGCTTCTCTGTTGGATTGGAACCACAGGCTTAAAATTGCAGCAGGGGCAGCAAGAGGGCTTCAGTACTTGCATGAAGAAGTTGCTCCAAATATTGTTCATGGATGTGTGAAGGCTTCAAATATCTTGATTGATGTGAAATTCTGTGCTAGGGTTTGTGATTATGGTCTATCATTTTTGGCACCAAAAGAGAAGAGGGGTCTAGTTGGTTATGTGGATGATGAGTATTGGAGAGGAGGTGGTGTGTGCAAAGAGAGCGATATGTTTGGTTTTGGGGTGGTTCTGTTGGAACTTCTGAGTGGGAGACGATGTGATGAAGGGTTTCTAGTGAAATGGGCAATGCCATTGATTCAGGAGATGAGGTTTAGTGAGTTTTTGGACCCAAGACTAGTTATTCCTCATGACATTAGGCCTCTTGTCAGATTGACCAAAGTTGCCTCGACTTGTGTTAGTAATTCCAGAAAGAGCAGACCTTCAATTAGTCAAGTCACAACTATCCTCAACAATTTGGAGATTGATTCAACTTACGGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

341

Amino Acids

37.86

Weight (kDa)

7.6

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	72 - 326	2.2e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	74 - 328	8e-26	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46080
fragaria_vesca	FvH4_3g08510
malus_domestica	MD05G1309800.v1.1 MD10G1288400.v1.1
prunus_persica	Prupe.4G053200_v2.0.a1
pyrus_communis	pycom05g28620
rosa_chinensis	RchiOBHm_Chr5g0009231 RchiOBHm_Chr5g0009321
rosa_laevigata	RLG00000031651
rosa_multiflora	Rmu_co8140636.1_g000001 Rmu_sc0006233.1_g000002 Rmu_sc0006233.1_g000028
rosa_roxburghii	Rroxscaffold_1G00066770 Rroxscaffold_1G00067470
rosa_rugosa	Rorug04G0441700 Rorug04G0441800 Rorug04G0441800
rosa_samantha	Rh5AG072500 Rh5BG068800 Rh5CG081400 Rh5DG068100 Rh5DG069100
rosa_wichuraiana	Rw5G006680 Rw5G006770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	670
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	3 cut(s)	198, 217, 287
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	300, 629
AcuI	CTGAAG	2 cut(s)	156, 536
AdeI	CACNNNGTG	1 cut(s)	419
AfaI	GTAC	2 cut(s)	404, 557
AfiI	CCNNNNNNNGG	3 cut(s)	398, 399, 490
AgsI	TTSAA	5 cut(s)	214, 345, 609, 966, 1011
AhlI	ACTAGT	1 cut(s)	877
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	415
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw26I	GTCTC	2 cut(s)	66, 787
AoxI	GGCC	3 cut(s)	238, 288, 899
ApeKI	GCWGC	3 cut(s)	260, 530, 539
ApoI	RAATTY	2 cut(s)	300, 629
Asp700I	GAANNNNTTC	1 cut(s)	810
AspS9I	GGNCC	2 cut(s)	238, 868
AsuHPI	GGTGA	3 cut(s)	46, 245, 431
AsuII	TTCGAA	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	868
BaeGI	GKGCMC	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	670
BbvI	GCAGC	3 cut(s)	247, 542, 551
BccI	CCATC	2 cut(s)	200, 482
BceAI	ACGGC	2 cut(s)	225, 275
BcgI	CGANNNNNNTGC	4 cut(s)	176, 208, 210, 242
BciT130I	CCWGG	1 cut(s)	417
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	66, 787
BcuI	ACTAGT	1 cut(s)	877
BfaI	CTAG	4 cut(s)	639, 692, 815, 878
BisI	GCNGC	5 cut(s)	198, 261, 288, 531, 540
BlsI	GCNGC	5 cut(s)	199, 262, 289, 532, 541
BmcAI	AGTACT	1 cut(s)	557
Bme1390I	CCNGG	1 cut(s)	417
Bme18I	GGWCC	1 cut(s)	868
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	238, 868
BmiI	GGNNCC	3 cut(s)	512, 672, 870
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	2 cut(s)	184, 484
Bpu14I	TTCGAA	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	308
BsaXI	ACNNNNNCTCC	8 cut(s)	712, 717, 742, 747, 784, 814, 836, 866
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 399, 490
Bse3DI	GCAATG	1 cut(s)	834
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	3 cut(s)	304, 599, 712
BseLI	CCNNNNNNNGG	3 cut(s)	398, 399, 490
BseMI	GCAATG	1 cut(s)	834
BseMII	CTCAG	2 cut(s)	420, 776
BseRI	GAGGAG	3 cut(s)	41, 89, 738
BseSI	GKGCMC	1 cut(s)	393
BseX3I	CGGCCG	1 cut(s)	288
BseXI	GCAGC	3 cut(s)	247, 542, 551
BseYI	CCCAGC	1 cut(s)	151
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	3 cut(s)	240, 290, 901
BshNI	GGYRCC	1 cut(s)	670
BsiEI	CGRYCG	1 cut(s)	291
BslI	CCNNNNNNNGG	3 cut(s)	398, 399, 490
BsmAI	GTCTC	2 cut(s)	66, 787
BsmBI	CGTCTC	2 cut(s)	66, 787
BsnI	GGCC	3 cut(s)	240, 290, 901
Bsp119I	TTCGAA	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	3 cut(s)	198, 217, 287
BspANI	GGCC	3 cut(s)	240, 290, 901
BspCNI	CTCAG	2 cut(s)	419, 777
BspHI	TCATGA	1 cut(s)	889
BspLI	GGNNCC	3 cut(s)	512, 672, 870
BspT104I	TTCGAA	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	670
BsrDI	GCAATG	1 cut(s)	834
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	1 cut(s)	127
BssNAI	GTATAC	1 cut(s)	175
Bst1107I	GTATAC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	3 cut(s)	11, 145, 253
Bst6I	CTCTTC	2 cut(s)	290, 677
BstBI	TTCGAA	1 cut(s)	270
BstDEI	CTNAG	3 cut(s)	156, 406, 785
BstF5I	GGATG	3 cut(s)	304, 599, 712
BstKTI	GATC	1 cut(s)	130
BstMAI	GTCTC	2 cut(s)	66, 787
BstMBI	GATC	1 cut(s)	127
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 536, 539, 744
BstNI	CCWGG	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	415
BstSLI	GKGCMC	1 cut(s)	393
BstV1I	GCAGC	3 cut(s)	247, 542, 551
BstZ17I	GTATAC	1 cut(s)	175
BstZI	CGGCCG	1 cut(s)	288
BsuRI	GGCC	3 cut(s)	240, 290, 901
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	3 cut(s)	304, 599, 712
BtsIMutI	CAGTG	2 cut(s)	16, 120
CciI	TCATGA	1 cut(s)	889
Cfr13I	GGNCC	2 cut(s)	238, 868
CsiI	ACCWGGT	1 cut(s)	415
Csp6I	GTAC	2 cut(s)	403, 556
CviAII	CATG	5 cut(s)	17, 436, 563, 590, 890
CviQI	GTAC	2 cut(s)	403, 556
DdeI	CTNAG	3 cut(s)	156, 406, 785
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
DraIII	CACNNNGTG	1 cut(s)	419
EaeI	YGGCCR	1 cut(s)	288
EagI	CGGCCG	1 cut(s)	288
Eam1104I	CTCTTC	2 cut(s)	290, 677
EarI	CTCTTC	2 cut(s)	290, 677
EclXI	CGGCCG	1 cut(s)	288
Eco147I	AGGCCT	1 cut(s)	901
Eco47I	GGWCC	1 cut(s)	868
Eco52I	CGGCCG	1 cut(s)	288
Eco57I	CTGAAG	2 cut(s)	156, 536
EcoRI	GAATTC	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	415
Esp3I	CGTCTC	2 cut(s)	66, 787
FaeI	CATG	5 cut(s)	20, 439, 566, 593, 893
FatI	CATG	5 cut(s)	16, 435, 562, 589, 889
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	5 cut(s)	198, 261, 288, 531, 540
FokI	GGATG	3 cut(s)	291, 606, 719
Fsp4HI	GCNGC	5 cut(s)	198, 261, 288, 531, 540
FspBI	CTAG	4 cut(s)	639, 692, 815, 878
GluI	GCNGC	5 cut(s)	198, 261, 288, 531, 540
GsaI	CCCAGC	1 cut(s)	155
HaeIII	GGCC	3 cut(s)	240, 290, 901
Hin1II	CATG	5 cut(s)	20, 439, 566, 593, 893
HinfI	GANTC	5 cut(s)	4, 225, 426, 838, 1007
HphI	GGTGA	3 cut(s)	46, 245, 431
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	6 cut(s)	93, 136, 309, 409, 786, 911
Hpy188III	TCNNGA	5 cut(s)	345, 616, 842, 890, 948
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	3 cut(s)	595, 800, 972
HpyCH4III	ACNGT	3 cut(s)	11, 145, 253
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	6 cut(s)	105, 263, 475, 530, 562, 738
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 536, 539, 744
HpyF3I	CTNAG	3 cut(s)	156, 406, 785
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	5 cut(s)	20, 439, 566, 593, 893
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	580
LpnPI	CCDG	9 cut(s)	165, 181, 402, 429, 498, 502, 519, 827, 961
Lsp1109I	GCAGC	3 cut(s)	247, 542, 551
LweI	GCATC	2 cut(s)	184, 484
MabI	ACCWGGT	1 cut(s)	415
MaeI	CTAG	4 cut(s)	639, 692, 815, 878
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	11, 976
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	6 cut(s)	80, 149, 234, 307, 578, 694
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	6 cut(s)	300, 525, 629, 943, 966, 994
MmeI	TCCRAC	2 cut(s)	483, 756
MroXI	GAANNNNTTC	1 cut(s)	810
MseI	TTAA	2 cut(s)	182, 522
MslI	CAYNNNNRTG	3 cut(s)	381, 434, 594
MspR9I	CCNGG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	4 cut(s)	216, 536, 539, 744
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	5 cut(s)	20, 439, 566, 593, 893
NlaIV	GGNNCC	3 cut(s)	512, 672, 870
NmuCI	GTSAC	2 cut(s)	11, 976
NspV	TTCGAA	1 cut(s)	270
PagI	TCATGA	1 cut(s)	889
PceI	AGGCCT	1 cut(s)	901
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	5 cut(s)	4, 225, 426, 838, 1007
PkrI	GCNGC	5 cut(s)	199, 262, 289, 532, 541
Psp6I	CCWGG	1 cut(s)	415
PspFI	CCCAGC	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	3 cut(s)	512, 672, 870
PspPI	GGNCC	2 cut(s)	238, 868
RsaI	GTAC	2 cut(s)	404, 557
RsaNI	GTAC	2 cut(s)	403, 556
RseI	CAYNNNNRTG	3 cut(s)	381, 434, 594
SaqAI	TTAA	2 cut(s)	182, 522
SatI	GCNGC	5 cut(s)	198, 261, 288, 531, 540
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	2 cut(s)	238, 868
ScaI	AGTACT	1 cut(s)	557
ScrFI	CCNGG	1 cut(s)	417
SduI	GDGCHC	1 cut(s)	393
SetI	ASST	7 cut(s)	62, 157, 421, 451, 730, 854, 964
SexAI	ACCWGGT	1 cut(s)	415
SfaNI	GCATC	2 cut(s)	184, 484
SfuI	TTCGAA	1 cut(s)	270
SinI	GGWCC	1 cut(s)	868
SmiMI	CAYNNNNRTG	3 cut(s)	381, 434, 594
SpeI	ACTAGT	1 cut(s)	877
Sse9I	AATT	6 cut(s)	300, 525, 629, 943, 966, 994
SseBI	AGGCCT	1 cut(s)	901
SsiI	CCGC	3 cut(s)	198, 217, 287
SspI	AATATT	3 cut(s)	267, 328, 583
SspMI	CTAG	4 cut(s)	639, 692, 815, 878
StuI	AGGCCT	1 cut(s)	901
StyD4I	CCNGG	1 cut(s)	415
TaaI	ACNGT	3 cut(s)	11, 145, 253
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	2 cut(s)	270, 929
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	6 cut(s)	300, 525, 629, 943, 966, 994
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	2 cut(s)	200, 290
TfiI	GAWTC	5 cut(s)	4, 225, 426, 838, 1007
Tru1I	TTAA	2 cut(s)	182, 522
Tru9I	TTAA	2 cut(s)	182, 522
TscAI	CASTG	2 cut(s)	16, 127
TseFI	GTSAC	2 cut(s)	11, 976
TseI	GCWGC	3 cut(s)	260, 530, 539
Tsp45I	GTSAC	2 cut(s)	11, 976
TspDTI	ATGAA	6 cut(s)	11, 17, 293, 578, 579, 819
TspRI	CASTG	2 cut(s)	16, 127
VpaK11BI	GGWCC	1 cut(s)	868
XapI	RAATTY	2 cut(s)	300, 629
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	810
XspI	CTAG	4 cut(s)	639, 692, 815, 878
ZrmI	AGTACT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.