Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007876

Physical Location & Seq

Genomic Coordinates Reverse (-)

29258304 .. 29259323

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGATGAAGCACAGTAAGGATGTTGCCTATCTTTTTATCATATCCATACTTTGCACATCGACTGTTGTTCTTGGTATCGTCCTTACTCTTATCCTCCTCTGCAAGAAAAAACCAGTCCAAACCCAAGAAACACCACCACAAACCAAGCCTACCGCTCAAGTGTATCCCTTAACCGACATAGACGTTGCCACAGACGGTTTCAACCCCCGTAGAATTGTAGGCGAAGGCCGGTTGGGAACCGTCTACGCCGCCATATTCGAAAAGGGGGAGATAGTAGCAGTGAAAAGAATACACTCTAGGCATGTTTTGAGCAATGCAGGGTTTGGGTTTTGTAGAATACTTAGGTCAATATCTCTAGCTCAGCACCCCAACATAGTTCCAATTATTGGGTACTCAGAAGGCCCAGGTGAGAGGATTATAGTGATGGAGTTTGTAGGCATGGTGTGCTTAGACTACTATTTGCATCAAAATCCAGATGGCGCGTCGTTATTGGACTGGAACCACAGGTTGAAGATTGCAGCTGGAGCAGCCAAAGGGCTTGAGTATTTGCATGAAGTCGTCGCGCCAAACATAATACATGGGTGTGTCAAGGCTACAAATATTTTGATAGATGTTAACTTTTGTGCTAGGGTTTGCGATTATGGGCTCTCATTTTTGGCTCCCCAAGAGAAGAGAGGCCTATTGGGATACGTGGACGACGAGTATTGGGGCGGTGGGGGCGGAGGAGGAGGAGGCGGCGGCGCTTGCAAGGAGAACGACGTGTACGGATTTGGTGTGGTTTTGTTGGAGATTTTGAGTGGGAGGTTGTGTGAAGATGGGAGGCTTGTGAATTGGTCACTGCCATTGATCAAGGAAAAGAGGTTTAGTGAGTTTTTGGACCCAAGACTTGTGATTCCTTCTGATATCATGCCTCTTGTTAGATTGGCCAAAGTTGCTTCTGCTTGTGTTGGCAATTCCAGAAAAAGCAGGCCTTCAATTGGTCAAGTGGCAACCATTTTGAGCAATTTGGAGATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

340

Amino Acids

36.89

Weight (kDa)

7.99

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	70 - 269	7.2e-22	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	71 - 219	3.1e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46080
fragaria_vesca	FvH4_3g08510
malus_domestica	MD05G1309800.v1.1 MD10G1288400.v1.1
prunus_persica	Prupe.4G053200_v2.0.a1
pyrus_communis	pycom05g28620
rosa_chinensis	RchiOBHm_Chr5g0009231 RchiOBHm_Chr5g0009321
rosa_laevigata	RLG00000031651
rosa_multiflora	Rmu_co8140636.1_g000001 Rmu_sc0006233.1_g000002 Rmu_sc0006233.1_g000028
rosa_roxburghii	Rroxscaffold_1G00066770 Rroxscaffold_1G00067470
rosa_rugosa	Rorug04G0441700 Rorug04G0441800 Rorug04G0441800
rosa_samantha	Rh5AG072500 Rh5BG068800 Rh5CG081400 Rh5DG068100 Rh5DG069100
rosa_wichuraiana	Rw5G006680 Rw5G006770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	386
AccBSI	CCGCTC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	2 cut(s)	482, 563
AciI	CCGC	6 cut(s)	153, 249, 711, 720, 735, 738
AcoI	YGGCCR	1 cut(s)	924
AfaI	GTAC	2 cut(s)	392, 764
AfiI	CCNNNNNNNGG	2 cut(s)	386, 977
AflIII	ACRYGT	1 cut(s)	759
AgsI	TTSAA	3 cut(s)	202, 511, 975
AjiI	CACGTC	1 cut(s)	760
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	2 cut(s)	359, 521
AluI	AGCT	2 cut(s)	359, 521
AoxI	GGCC	5 cut(s)	226, 400, 676, 924, 968
ApeKI	GCWGC	2 cut(s)	518, 527
AspLEI	GCGC	3 cut(s)	482, 565, 743
AspS9I	GGNCC	2 cut(s)	401, 877
AsuHPI	GGTGA	1 cut(s)	419
AsuII	TTCGAA	1 cut(s)	258
AvaII	GGWCC	1 cut(s)	877
BalI	TGGCCA	1 cut(s)	926
BanII	GRGCYC	1 cut(s)	648
BbvI	GCAGC	2 cut(s)	530, 539
BccI	CCATC	4 cut(s)	418, 470, 809, 1006
BciT130I	CCWGG	1 cut(s)	405
BciVI	GTATCC	2 cut(s)	174, 680
BclI	TGATCA	1 cut(s)	846
BfaI	CTAG	3 cut(s)	297, 356, 627
BfoI	RGCGCY	1 cut(s)	744
BfuI	GTATCC	2 cut(s)	174, 680
BisI	GCNGC	5 cut(s)	249, 519, 528, 736, 739
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	5 cut(s)	250, 520, 529, 737, 740
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	877
BmgBI	CACGTC	1 cut(s)	760
BmgT120I	GGNCC	2 cut(s)	401, 877
BmiI	GGNNCC	4 cut(s)	238, 500, 660, 879
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	472
BpmI	CTGGAG	1 cut(s)	543
Bpu1102I	GCTNAGC	1 cut(s)	360
Bpu14I	TTCGAA	1 cut(s)	258
BpuEI	CTTGAG	2 cut(s)	141, 560
BsaAI	YACGTR	1 cut(s)	691
BsaJI	CCNNGG	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	793, 823
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 977
Bse118I	RCCGGY	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	113, 500
Bse3DI	GCAATG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	1 cut(s)	403
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	2 cut(s)	386, 977
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	2 cut(s)	374, 408
BseNI	ACTGG	2 cut(s)	113, 500
BseRI	GAGGAG	4 cut(s)	86, 738, 741, 744
BseXI	GCAGC	2 cut(s)	530, 539
Bsh1236I	CGCG	2 cut(s)	482, 563
BshFI	GGCC	5 cut(s)	228, 402, 678, 926, 970
BsiSI	CCGG	1 cut(s)	229
BslI	CCNNNNNNNGG	2 cut(s)	386, 977
BsnI	GGCC	5 cut(s)	228, 402, 678, 926, 970
Bsp119I	TTCGAA	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp143I	GATC	1 cut(s)	846
Bsp1720I	GCTNAGC	1 cut(s)	360
BspACI	CCGC	6 cut(s)	153, 249, 711, 720, 735, 738
BspANI	GGCC	5 cut(s)	228, 402, 678, 926, 970
BspCNI	CTCAG	2 cut(s)	373, 407
BspFNI	CGCG	2 cut(s)	482, 563
BspLI	GGNNCC	4 cut(s)	238, 500, 660, 879
BspT104I	TTCGAA	1 cut(s)	258
BsrBI	CCGCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	113, 500
BssAI	RCCGGY	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	1 cut(s)	846
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	4 cut(s)	14, 64, 197, 241
Bst6I	CTCTTC	1 cut(s)	665
BstAPI	GCANNNNNTGC	1 cut(s)	444
BstBAI	YACGTR	1 cut(s)	691
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	745, 968
BstDEI	CTNAG	4 cut(s)	341, 360, 394, 448
BstF5I	GGATG	1 cut(s)	25
BstFNI	CGCG	2 cut(s)	482, 563
BstH2I	RGCGCY	1 cut(s)	744
BstHHI	GCGC	3 cut(s)	482, 565, 743
BstKTI	GATC	1 cut(s)	849
BstMBI	GATC	1 cut(s)	846
BstMWI	GCNNNNNNNGC	6 cut(s)	444, 524, 527, 717, 744, 932
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	403
BstUI	CGCG	2 cut(s)	482, 563
BstV1I	GCAGC	2 cut(s)	530, 539
BsuI	GTATCC	2 cut(s)	174, 680
BsuRI	GGCC	5 cut(s)	228, 402, 678, 926, 970
BtrI	CACGTC	1 cut(s)	760
BtsCI	GGATG	1 cut(s)	25
BtsI	GCAGTG	2 cut(s)	285, 836
BtsIMutI	CAGTG	2 cut(s)	285, 836
Cac8I	GCNNGC	2 cut(s)	745, 968
CfoI	GCGC	3 cut(s)	482, 565, 743
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	401, 877
CseI	GACGC	1 cut(s)	471
Csp6I	GTAC	2 cut(s)	391, 763
CviAII	CATG	5 cut(s)	302, 439, 551, 578, 907
CviQI	GTAC	2 cut(s)	391, 763
DdeI	CTNAG	4 cut(s)	341, 360, 394, 448
DpnI	GATC	1 cut(s)	848
DpnII	GATC	1 cut(s)	846
EaeI	YGGCCR	1 cut(s)	924
Eam1104I	CTCTTC	1 cut(s)	665
EarI	CTCTTC	1 cut(s)	665
EciI	GGCGGA	1 cut(s)	735
Eco147I	AGGCCT	2 cut(s)	678, 970
Eco24I	GRGCYC	1 cut(s)	648
Eco32I	GATATC	1 cut(s)	904
Eco47I	GGWCC	1 cut(s)	877
EcoRII	CCWGG	1 cut(s)	403
EcoRV	GATATC	1 cut(s)	904
EcoT38I	GRGCYC	1 cut(s)	648
FaeI	CATG	5 cut(s)	305, 442, 554, 581, 910
FalI	AAGNNNNNCTT	2 cut(s)	955, 987
FatI	CATG	5 cut(s)	301, 438, 550, 577, 906
FbaI	TGATCA	1 cut(s)	846
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	5 cut(s)	249, 519, 528, 736, 739
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	5 cut(s)	249, 519, 528, 736, 739
FspBI	CTAG	3 cut(s)	297, 356, 627
GlaI	GCGC	3 cut(s)	481, 564, 742
GluI	GCNGC	5 cut(s)	249, 519, 528, 736, 739
GsuI	CTGGAG	1 cut(s)	543
HaeII	RGCGCY	1 cut(s)	744
HaeIII	GGCC	5 cut(s)	228, 402, 678, 926, 970
HapII	CCGG	1 cut(s)	229
HgaI	GACGC	1 cut(s)	471
HhaI	GCGC	3 cut(s)	482, 565, 743
Hin1II	CATG	5 cut(s)	305, 442, 554, 581, 910
Hin6I	GCGC	3 cut(s)	480, 563, 741
HinP1I	GCGC	3 cut(s)	480, 563, 741
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HinfI	GANTC	1 cut(s)	892
HpaI	GTTAAC	1 cut(s)	616
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	4 cut(s)	244, 616, 694, 763
Hpy188I	TCNGA	2 cut(s)	397, 901
Hpy188III	TCNNGA	2 cut(s)	473, 957
Hpy8I	GTNNAC	4 cut(s)	244, 616, 694, 763
Hpy99I	CGWCG	4 cut(s)	487, 563, 701, 761
HpyAV	CCTTC	4 cut(s)	218, 392, 906, 981
HpyCH4III	ACNGT	4 cut(s)	14, 64, 197, 241
HpyCH4IV	ACGT	3 cut(s)	183, 690, 759
HpyCH4V	TGCA	7 cut(s)	54, 102, 317, 463, 518, 550, 747
HpyF10VI	GCNNNNNNNGC	6 cut(s)	444, 524, 527, 717, 744, 932
HpyF3I	CTNAG	4 cut(s)	341, 360, 394, 448
HpySE526I	ACGT	3 cut(s)	183, 690, 759
Hsp92II	CATG	5 cut(s)	305, 442, 554, 581, 910
HspAI	GCGC	3 cut(s)	480, 563, 741
Ksp22I	TGATCA	1 cut(s)	846
KspAI	GTTAAC	1 cut(s)	616
Kzo9I	GATC	1 cut(s)	846
LmnI	GCTCC	2 cut(s)	524, 664
Lsp1109I	GCAGC	2 cut(s)	530, 539
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	3 cut(s)	297, 356, 627
MaeII	ACGT	3 cut(s)	183, 690, 759
MaeIII	GTNAC	1 cut(s)	834
MalI	GATC	1 cut(s)	848
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	1 cut(s)	846
MboII	GAAGA	3 cut(s)	523, 682, 824
MfeI	CAATTG	1 cut(s)	975
MhlI	GDGCHC	1 cut(s)	648
MlsI	TGGCCA	1 cut(s)	926
MluCI	AATT	6 cut(s)	213, 381, 829, 952, 975, 1003
MluNI	TGGCCA	1 cut(s)	926
MmeI	TCCRAC	1 cut(s)	765
Mox20I	TGGCCA	1 cut(s)	926
MscI	TGGCCA	1 cut(s)	926
MseI	TTAA	2 cut(s)	170, 615
MslI	CAYNNNNRTG	1 cut(s)	582
Msp20I	TGGCCA	1 cut(s)	926
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	405
MunI	CAATTG	1 cut(s)	975
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	2 cut(s)	482, 563
MwoI	GCNNNNNNNGC	6 cut(s)	444, 524, 527, 717, 744, 932
NdeII	GATC	1 cut(s)	846
NlaIII	CATG	5 cut(s)	305, 442, 554, 581, 910
NlaIV	GGNNCC	4 cut(s)	238, 500, 660, 879
NmuCI	GTSAC	1 cut(s)	834
NspI	RCATGY	1 cut(s)	305
NspV	TTCGAA	1 cut(s)	258
PceI	AGGCCT	2 cut(s)	678, 970
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PfeI	GAWTC	1 cut(s)	892
PflMI	CCANNNNNTGG	1 cut(s)	386
PkrI	GCNGC	5 cut(s)	250, 520, 529, 737, 740
Ppu21I	YACGTR	1 cut(s)	691
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	4 cut(s)	238, 500, 660, 879
PspPI	GGNCC	2 cut(s)	401, 877
PsrI	GAACNNNNNNTAC	2 cut(s)	746, 778
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	2 cut(s)	392, 764
RsaNI	GTAC	2 cut(s)	391, 763
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	170, 615
SatI	GCNGC	5 cut(s)	249, 519, 528, 736, 739
Sau3AI	GATC	1 cut(s)	846
Sau96I	GGNCC	2 cut(s)	401, 877
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	648
SfaNI	GCATC	1 cut(s)	472
SfuI	TTCGAA	1 cut(s)	258
SinI	GGWCC	1 cut(s)	877
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	2 cut(s)	156, 539
SmoI	CTYRAG	2 cut(s)	156, 539
Sse9I	AATT	6 cut(s)	213, 381, 829, 952, 975, 1003
SseBI	AGGCCT	2 cut(s)	678, 970
SsiI	CCGC	6 cut(s)	153, 249, 711, 720, 735, 738
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	3 cut(s)	297, 356, 627
StuI	AGGCCT	2 cut(s)	678, 970
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	4 cut(s)	14, 64, 197, 241
TaiI	ACGT	3 cut(s)	186, 693, 762
TaqI	TCGA	2 cut(s)	59, 258
TasI	AATT	6 cut(s)	213, 381, 829, 952, 975, 1003
TauI	GCSGC	3 cut(s)	251, 738, 741
TfiI	GAWTC	1 cut(s)	892
Tru1I	TTAA	2 cut(s)	170, 615
Tru9I	TTAA	2 cut(s)	170, 615
TscAI	CASTG	2 cut(s)	285, 843
TseFI	GTSAC	1 cut(s)	834
TseI	GCWGC	2 cut(s)	518, 527
Tsp45I	GTSAC	1 cut(s)	834
TspDTI	ATGAA	2 cut(s)	20, 567
TspGWI	ACGGA	1 cut(s)	780
TspRI	CASTG	2 cut(s)	285, 843
Van91I	CCANNNNNTGG	1 cut(s)	386
VpaK11BI	GGWCC	1 cut(s)	877
XceI	RCATGY	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	3 cut(s)	297, 356, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.