RchiOBHm_Chr5g0009231

Serine threonine-protein kinase-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
6148057 .. 6148637
581 bp
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UTR
Exon/CDS
Intron
PRQ29012

Sequence Viewer

Length: 507 bp
ATGGAGTTTGTAGGTATGGTTTGCTTGGATTTTTACTTGCATCAAAACCCAGATGGGGCTTCTCTGTTGGATTGGAACCACAGGCTTAAAATTGCAGCAGGGGCAGCAAGAGGGCTTCAGTACTTGCATGAAGGAGTTGCTCCAAATATTGTTCATGGATGTGTGAAGGCTTCAAATATCTTGCTTGATGTGAAATTCTGTGCTAGGGTTTGTGATTATGGTCTATCATTTTTGGCACCAAAAGAGAAGAGGGGTCTAGTTGGTTATGTGGATGATGATGGGAGACGATGTGATGAAGGGTTTCTAGTGAAATGGGCAATGCCATTGATTCAGGAGATGAGGTTTAGTGAGTTTTTGGACCCAAGACTTGTTATTCCTCATGACATTAGGCCTCTTGTCAGATTGACCAAAGTTGCCTCGACTTGTGTTAGTAATTCCAGAAAGAGCATACCTTCAATCAGTCAAGTCACAACTATCCTCAACAATTTGGTGATAGATTCAACGTGA

Protein Analysis

168

Amino Acids

18.74

Weight (kDa)

7.64

Isoelectric Point (pI)

30.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 79 1.1e-09 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 26 - 82 3.3e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 235
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 3 cut(s) 174, 456, 501
Alw26I GTCTC 1 cut(s) 277
AoxI GGCC 1 cut(s) 389
ApeKI GCWGC 2 cut(s) 95, 104
ApoI RAATTY 1 cut(s) 194
Asp700I GAANNNNTTC 1 cut(s) 300
AspS9I GGNCC 1 cut(s) 358
AsuHPI GGTGA 1 cut(s) 502
AvaII GGWCC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 235
BbvI GCAGC 2 cut(s) 107, 116
BccI CCATC 2 cut(s) 47, 272
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 3 cut(s) 204, 257, 305
BisI GCNGC 2 cut(s) 96, 105
BlsI GCNGC 2 cut(s) 97, 106
BmcAI AGTACT 1 cut(s) 122
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 3 cut(s) 77, 237, 360
BmsI GCATC 1 cut(s) 49
BsaXI ACNNNNNCTCC 4 cut(s) 274, 304, 326, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse3DI GCAATG 1 cut(s) 324
BseGI GGATG 2 cut(s) 164, 277
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 1 cut(s) 324
BseXI GCAGC 2 cut(s) 107, 116
BshFI GGCC 1 cut(s) 391
BshNI GGYRCC 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 277
BsmBI CGTCTC 1 cut(s) 277
BsnI GGCC 1 cut(s) 391
BspANI GGCC 1 cut(s) 391
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 3 cut(s) 77, 237, 360
BspT107I GGYRCC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 324
Bst6I CTCTTC 1 cut(s) 242
BstF5I GGATG 2 cut(s) 164, 277
BstMAI GTCTC 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 101, 104
BstV1I GCAGC 2 cut(s) 107, 116
BsuRI GGCC 1 cut(s) 391
BtsCI GGATG 2 cut(s) 164, 277
CciI TCATGA 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 358
Csp6I GTAC 1 cut(s) 121
CviAII CATG 3 cut(s) 128, 155, 380
CviJI RGCY 5 cut(s) 59, 85, 115, 170, 391
CviKI_1 RGCY 5 cut(s) 59, 85, 115, 170, 391
CviQI GTAC 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Eco147I AGGCCT 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 3 cut(s) 131, 158, 383
FaiI YATR 7 cut(s) 17, 129, 156, 219, 267, 381, 449
FatI CATG 3 cut(s) 127, 154, 379
Fnu4HI GCNGC 2 cut(s) 96, 105
FokI GGATG 2 cut(s) 171, 284
Fsp4HI GCNGC 2 cut(s) 96, 105
FspBI CTAG 3 cut(s) 204, 257, 305
GluI GCNGC 2 cut(s) 96, 105
HaeIII GGCC 1 cut(s) 391
Hin1II CATG 3 cut(s) 131, 158, 383
HinfI GANTC 2 cut(s) 328, 497
HphI GGTGA 1 cut(s) 502
Hpy188I TCNGA 1 cut(s) 401
Hpy188III TCNNGA 3 cut(s) 332, 380, 438
HpyAV CCTTC 4 cut(s) 125, 160, 290, 462
HpyCH4IV ACGT 1 cut(s) 503
HpyCH4V TGCA 3 cut(s) 40, 95, 127
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 104
HpySE526I ACGT 1 cut(s) 503
Hsp92II CATG 3 cut(s) 131, 158, 383
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 5 cut(s) 63, 67, 84, 317, 451
Lsp1109I GCAGC 2 cut(s) 107, 116
LweI GCATC 1 cut(s) 49
MaeI CTAG 3 cut(s) 204, 257, 305
MaeII ACGT 1 cut(s) 503
MaeIII GTNAC 1 cut(s) 466
MboII GAAGA 1 cut(s) 259
MluCI AATT 4 cut(s) 90, 194, 433, 484
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 7 cut(s) 104, 243, 333, 387, 402, 427, 488
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 101, 104
NlaIII CATG 3 cut(s) 131, 158, 383
NlaIV GGNNCC 3 cut(s) 77, 237, 360
NmuCI GTSAC 1 cut(s) 466
PagI TCATGA 1 cut(s) 379
PceI AGGCCT 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 2 cut(s) 328, 497
PkrI GCNGC 2 cut(s) 97, 106
PspN4I GGNNCC 3 cut(s) 77, 237, 360
PspPI GGNCC 1 cut(s) 358
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 2 cut(s) 96, 105
Sau96I GGNCC 1 cut(s) 358
ScaI AGTACT 1 cut(s) 122
SetI ASST 4 cut(s) 16, 344, 454, 506
SfaNI GCATC 1 cut(s) 49
SinI GGWCC 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 4 cut(s) 90, 194, 433, 484
SseBI AGGCCT 1 cut(s) 391
SspI AATATT 1 cut(s) 148
SspMI CTAG 3 cut(s) 204, 257, 305
StuI AGGCCT 1 cut(s) 391
TaiI ACGT 1 cut(s) 506
TaqI TCGA 1 cut(s) 419
TasI AATT 4 cut(s) 90, 194, 433, 484
TatI WGTACW 1 cut(s) 120
TfiI GAWTC 2 cut(s) 328, 497
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 2 cut(s) 95, 104
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 3 cut(s) 143, 144, 309
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 3 cut(s) 204, 257, 305
ZrmI AGTACT 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.