Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007876

Physical Location & Seq

Genomic Coordinates Reverse (-)

37767481 .. 37768491

Gene Structure 1011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1288400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGATGAACCACAGTAAACATGTTGCCTATCTTATTATCATATCCTTACTTTGCACATCCACTGTTATTCTTGGTGCTGTCCTCACTCTCATCCTCCTCTGCAAGAAAAAACCAGTCCAAACCCAAGAAACACCACCACCAACCAAGCCTAGTGCTCAAGTGTATCCCTTGACCAACATAGATGTTGCCACAGACGGTTTCAATCATCGGAGAATTGTCGGAGAAGGCCGTTTCGGGACCGTCTATGCCGCCATATTCGAGAAGGGGCAAATAGCAGCGGTGAAAAGAATTCACTCTAGGCATGTTTTGAGCAATGCAGGTTTTGGGTTTTCTAGAATACTTAGGTCAATATCTCTAGCTCAGCACCCCAATATAGTGCCGATTATTGGGTACTCAGAAGGCCCAGGTGAGAGGATTATAGTGATGGAGTTTGTAGGCATGGTGTGCTTAGACTACTATTTGCATCAAAATTCAGATGGCGCGTCGTTGGACTGGAACCACAGGCTGAAGATTGCAGCAGGGGCAGCCAAAGGGCTTGAGTATTTGCATGAAGGGGTGGCTCCAAACATAATACATGGGTGTGTCAAGGCTTCAAATATTTTGATAGATGTCAACTTTTGTGCTAGGTTGTGTGATTATGGGCTATCGTTTTTGGCTCCCCAAGAGAAGAGAGGCCTGTTGGGACACGTGGACGACGAGTATTGGGATGGCGGGCTAGGAGGAGGAGGCGGCGCTTGCAAGGAAAGCGACGTGTACGGATTTGGTGTGGTTTTGTTGGAGCTTTTGAGTGGTAGGTTGTGTGACGAGGGGAGGCTTGTGAATTGGTCATTGCCATTGATCAAGGAAAAGAGGTTTAGTGAGTTTTTGGACCCCCGTCTTGCGATCCCTTCTGAGATTTTGCCTCTTGTTAGATTGGCTAAAGTTGCTACCGCTTGTGTTGGTAATTCCAGAAAAAGCAGGCCTTCAATTGGTCAAGTGGCAACTATTTTGAGCAGTTTGGAGATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

337

Amino Acids

36.56

Weight (kDa)

8.32

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	68 - 267	2.1e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	70 - 328	9.3e-27	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46080
fragaria_vesca	FvH4_3g08510
malus_domestica	MD05G1309800.v1.1 MD10G1288400.v1.1
prunus_persica	Prupe.4G053200_v2.0.a1
pyrus_communis	pycom05g28620
rosa_chinensis	RchiOBHm_Chr5g0009231 RchiOBHm_Chr5g0009321
rosa_laevigata	RLG00000031651
rosa_multiflora	Rmu_co8140636.1_g000001 Rmu_sc0006233.1_g000002 Rmu_sc0006233.1_g000028
rosa_roxburghii	Rroxscaffold_1G00066770 Rroxscaffold_1G00067470
rosa_rugosa	Rorug04G0441700 Rorug04G0441800 Rorug04G0441800
rosa_samantha	Rh5AG072500 Rh5BG068800 Rh5CG081400 Rh5DG068100 Rh5DG069100
rosa_wichuraiana	Rw5G006680 Rw5G006770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	308
AccII	CGCG	1 cut(s)	482
AciI	CCGC	5 cut(s)	249, 278, 711, 729, 930
AclWI	GGATC	1 cut(s)	877
AcsI	RAATTY	2 cut(s)	288, 469
AcuI	CTGAAG	1 cut(s)	527
AcvI	CACGTG	1 cut(s)	688
AfaI	GTAC	2 cut(s)	392, 755
AfiI	CCNNNNNNNGG	2 cut(s)	386, 968
AflIII	ACRYGT	3 cut(s)	19, 685, 750
AgsI	TTSAA	3 cut(s)	202, 594, 966
AjiI	CACGTC	1 cut(s)	751
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	2 cut(s)	359, 781
AluI	AGCT	2 cut(s)	359, 781
Alw21I	GWGCWC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	877
AoxI	GGCC	4 cut(s)	226, 400, 673, 959
ApeKI	GCWGC	3 cut(s)	275, 515, 524
ApoI	RAATTY	2 cut(s)	288, 469
AspLEI	GCGC	2 cut(s)	482, 734
AspS9I	GGNCC	3 cut(s)	237, 401, 868
AsuHPI	GGTGA	2 cut(s)	292, 419
AvaII	GGWCC	2 cut(s)	237, 868
BbrPI	CACGTG	1 cut(s)	688
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	3 cut(s)	287, 527, 536
BccI	CCATC	4 cut(s)	418, 470, 701, 997
BceAI	ACGGC	1 cut(s)	213
BciT130I	CCWGG	1 cut(s)	405
BciVI	GTATCC	1 cut(s)	174
BclI	TGATCA	1 cut(s)	837
BfaI	CTAG	6 cut(s)	150, 297, 333, 356, 624, 716
BfoI	RGCGCY	1 cut(s)	735
BfuAI	ACCTGC	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	174
BisI	GCNGC	5 cut(s)	249, 276, 516, 525, 730
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	5 cut(s)	250, 277, 517, 526, 731
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	2 cut(s)	237, 868
BmgBI	CACGTC	1 cut(s)	751
BmgT120I	GGNCC	3 cut(s)	237, 401, 868
BmiI	GGNNCC	5 cut(s)	238, 497, 561, 657, 870
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	472
BoxI	GACNNNNGTC	1 cut(s)	873
Bpu1102I	GCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	2 cut(s)	141, 557
BsaAI	YACGTR	1 cut(s)	688
BsaJI	CCNNGG	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 968
Bse1I	ACTGG	2 cut(s)	113, 497
Bse3DI	GCAATG	2 cut(s)	319, 827
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	1 cut(s)	403
BseGI	GGATG	3 cut(s)	56, 90, 712
BseLI	CCNNNNNNNGG	2 cut(s)	386, 968
BseMI	GCAATG	2 cut(s)	319, 827
BseMII	CTCAG	3 cut(s)	374, 408, 882
BseNI	ACTGG	2 cut(s)	113, 497
BseRI	GAGGAG	3 cut(s)	86, 735, 738
BseXI	GCAGC	3 cut(s)	287, 527, 536
Bsh1236I	CGCG	1 cut(s)	482
BshFI	GGCC	4 cut(s)	228, 402, 675, 961
BsiHKAI	GWGCWC	1 cut(s)	157
BslFI	GGGAC	2 cut(s)	250, 696
BslI	CCNNNNNNNGG	2 cut(s)	386, 968
BsmFI	GGGAC	2 cut(s)	250, 696
BsnI	GGCC	4 cut(s)	228, 402, 675, 961
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	837, 882
Bsp1720I	GCTNAGC	1 cut(s)	360
BspACI	CCGC	5 cut(s)	249, 278, 711, 729, 930
BspANI	GGCC	4 cut(s)	228, 402, 675, 961
BspCNI	CTCAG	3 cut(s)	373, 407, 883
BspFNI	CGCG	1 cut(s)	482
BspLI	GGNNCC	5 cut(s)	238, 497, 561, 657, 870
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	877
BsrDI	GCAATG	2 cut(s)	319, 827
BsrI	ACTGG	2 cut(s)	113, 497
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	2 cut(s)	837, 882
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	4 cut(s)	14, 64, 197, 241
Bst6I	CTCTTC	1 cut(s)	662
BstAPI	GCANNNNNTGC	1 cut(s)	444
BstBAI	YACGTR	1 cut(s)	688
BstC8I	GCNNGC	3 cut(s)	713, 736, 959
BstDEI	CTNAG	5 cut(s)	341, 360, 394, 448, 891
BstF5I	GGATG	3 cut(s)	56, 90, 712
BstFNI	CGCG	1 cut(s)	482
BstH2I	RGCGCY	1 cut(s)	735
BstHHI	GCGC	2 cut(s)	482, 734
BstKTI	GATC	2 cut(s)	840, 885
BstMBI	GATC	2 cut(s)	837, 882
BstMWI	GCNNNNNNNGC	6 cut(s)	444, 521, 524, 735, 744, 923
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	2 cut(s)	23, 305
BstPAI	GACNNNNGTC	1 cut(s)	873
BstSCI	CCNGG	1 cut(s)	403
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	3 cut(s)	287, 527, 536
BsuI	GTATCC	1 cut(s)	174
BsuRI	GGCC	4 cut(s)	228, 402, 675, 961
BtrI	CACGTC	1 cut(s)	751
BtsCI	GGATG	3 cut(s)	56, 90, 712
BtsIMutI	CAGTG	1 cut(s)	60
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	3 cut(s)	713, 736, 959
CfoI	GCGC	2 cut(s)	482, 734
Cfr13I	GGNCC	3 cut(s)	237, 401, 868
CseI	GACGC	1 cut(s)	471
Csp6I	GTAC	2 cut(s)	391, 754
CviAII	CATG	5 cut(s)	20, 302, 439, 548, 575
CviQI	GTAC	2 cut(s)	391, 754
DdeI	CTNAG	5 cut(s)	341, 360, 394, 448, 891
DpnI	GATC	2 cut(s)	839, 884
DpnII	GATC	2 cut(s)	837, 882
Eam1104I	CTCTTC	1 cut(s)	662
EarI	CTCTTC	1 cut(s)	662
Eco147I	AGGCCT	2 cut(s)	675, 961
Eco47I	GGWCC	2 cut(s)	237, 868
Eco57I	CTGAAG	1 cut(s)	527
Eco72I	CACGTG	1 cut(s)	688
EcoRI	GAATTC	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	403
FaeI	CATG	5 cut(s)	23, 305, 442, 551, 578
FalI	AAGNNNNNCTT	2 cut(s)	946, 978
FaqI	GGGAC	2 cut(s)	250, 696
FatI	CATG	5 cut(s)	19, 301, 438, 547, 574
FauI	CCCGC	1 cut(s)	704
FbaI	TGATCA	1 cut(s)	837
Fnu4HI	GCNGC	5 cut(s)	249, 276, 516, 525, 730
FokI	GGATG	3 cut(s)	43, 77, 719
Fsp4HI	GCNGC	5 cut(s)	249, 276, 516, 525, 730
FspBI	CTAG	6 cut(s)	150, 297, 333, 356, 624, 716
GlaI	GCGC	2 cut(s)	481, 733
GluI	GCNGC	5 cut(s)	249, 276, 516, 525, 730
HaeII	RGCGCY	1 cut(s)	735
HaeIII	GGCC	4 cut(s)	228, 402, 675, 961
HgaI	GACGC	1 cut(s)	471
HhaI	GCGC	2 cut(s)	482, 734
Hin1II	CATG	5 cut(s)	23, 305, 442, 551, 578
Hin6I	GCGC	2 cut(s)	480, 732
HinP1I	GCGC	2 cut(s)	480, 732
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HphI	GGTGA	2 cut(s)	292, 419
Hpy166II	GTNNAC	4 cut(s)	17, 613, 691, 754
Hpy188I	TCNGA	5 cut(s)	210, 221, 397, 475, 892
Hpy188III	TCNNGA	4 cut(s)	235, 259, 333, 948
Hpy8I	GTNNAC	4 cut(s)	17, 613, 691, 754
Hpy99I	CGWCG	3 cut(s)	487, 698, 752
HpyAV	CCTTC	6 cut(s)	218, 256, 392, 545, 897, 972
HpyCH4III	ACNGT	4 cut(s)	14, 64, 197, 241
HpyCH4IV	ACGT	2 cut(s)	687, 750
HpyCH4V	TGCA	7 cut(s)	54, 102, 317, 463, 515, 547, 738
HpyF10VI	GCNNNNNNNGC	6 cut(s)	444, 521, 524, 735, 744, 923
HpyF3I	CTNAG	5 cut(s)	341, 360, 394, 448, 891
HpySE526I	ACGT	2 cut(s)	687, 750
Hsp92II	CATG	5 cut(s)	23, 305, 442, 551, 578
HspAI	GCGC	2 cut(s)	480, 732
Ksp22I	TGATCA	1 cut(s)	837
Kzo9I	GATC	2 cut(s)	837, 882
LmnI	GCTCC	3 cut(s)	565, 661, 778
Lsp1109I	GCAGC	3 cut(s)	287, 527, 536
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	6 cut(s)	150, 297, 333, 356, 624, 716
MaeII	ACGT	2 cut(s)	687, 750
MaeIII	GTNAC	1 cut(s)	800
MalI	GATC	2 cut(s)	839, 884
MboI	GATC	2 cut(s)	837, 882
MboII	GAAGA	2 cut(s)	520, 679
MfeI	CAATTG	1 cut(s)	966
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	6 cut(s)	213, 288, 469, 820, 943, 966
MmeI	TCCRAC	3 cut(s)	199, 468, 756
MslI	CAYNNNNRTG	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	405
MunI	CAATTG	1 cut(s)	966
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	6 cut(s)	444, 521, 524, 735, 744, 923
NdeII	GATC	2 cut(s)	837, 882
NlaIII	CATG	5 cut(s)	23, 305, 442, 551, 578
NlaIV	GGNNCC	5 cut(s)	238, 497, 561, 657, 870
NmuCI	GTSAC	1 cut(s)	800
NspI	RCATGY	2 cut(s)	23, 305
PceI	AGGCCT	2 cut(s)	675, 961
PciI	ACATGT	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	693
PkrI	GCNGC	5 cut(s)	250, 277, 517, 526, 731
PmaCI	CACGTG	1 cut(s)	688
PmlI	CACGTG	1 cut(s)	688
Ppu21I	YACGTR	1 cut(s)	688
PscI	ACATGT	1 cut(s)	19
PshAI	GACNNNNGTC	1 cut(s)	873
Psp6I	CCWGG	1 cut(s)	403
PspCI	CACGTG	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	5 cut(s)	238, 497, 561, 657, 870
PspPI	GGNCC	3 cut(s)	237, 401, 868
RsaI	GTAC	2 cut(s)	392, 755
RsaNI	GTAC	2 cut(s)	391, 754
RseI	CAYNNNNRTG	1 cut(s)	579
SatI	GCNGC	5 cut(s)	249, 276, 516, 525, 730
Sau3AI	GATC	2 cut(s)	837, 882
Sau96I	GGNCC	3 cut(s)	237, 401, 868
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	472
SinI	GGWCC	2 cut(s)	237, 868
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	2 cut(s)	156, 536
SmoI	CTYRAG	2 cut(s)	156, 536
Sse9I	AATT	6 cut(s)	213, 288, 469, 820, 943, 966
SseBI	AGGCCT	2 cut(s)	675, 961
SsiI	CCGC	5 cut(s)	249, 278, 711, 729, 930
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	6 cut(s)	150, 297, 333, 356, 624, 716
StuI	AGGCCT	2 cut(s)	675, 961
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	4 cut(s)	14, 64, 197, 241
TaiI	ACGT	2 cut(s)	690, 753
TaqI	TCGA	1 cut(s)	258
TasI	AATT	6 cut(s)	213, 288, 469, 820, 943, 966
TauI	GCSGC	2 cut(s)	251, 732
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	800
TseI	GCWGC	3 cut(s)	275, 515, 524
Tsp45I	GTSAC	1 cut(s)	800
TspDTI	ATGAA	2 cut(s)	20, 564
TspGWI	ACGGA	1 cut(s)	771
TspRI	CASTG	1 cut(s)	67
VpaK11BI	GGWCC	2 cut(s)	237, 868
XapI	RAATTY	2 cut(s)	288, 469
XbaI	TCTAGA	1 cut(s)	332
XceI	RCATGY	2 cut(s)	23, 305
XspI	CTAG	6 cut(s)	150, 297, 333, 356, 624, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.