Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007876

Physical Location & Seq

Genomic Coordinates Reverse (-)

6908269 .. 6910743

Gene Structure 2475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G006680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAATCACAGTGACCATGTTCATATTGCCTATTACCTTGTCATCTCCCTCCTTAACACGTCTCTTATTGTTCTCGGTCTTGTGCTTCTTCTGACCCTCCTCTGCAAGAAGAAACAGAGCACTGATGATCAATCTGAAGAAACTGTAATCCCAGCTAAGATTTGTGCCAGAGTATACCCTCTAACCGATATTGATGCCTCCACAGATGGCTTCAACCGCAGAAGAATCGTCGGTGAGGGCCGTTTGGGAACTGTGTATGCTGCAATATTCGAAAAGGGGGAGATAGCGGCCATGAAGAGAATTCATTCGAGGCTTGTGTTAGGAAATATTGGTTTTTGGTTTTCAAGAACACTTGGCTCTCTCTCATTGGCTCAACACCCCAATGTAGTGCCCATTGTTGGGTACTCAGAAGCACCAGGTAGAATCATTGTCATGGAGTTTGTAGGTATGGTTTGCTTGGATTTTTACTTGCATCAAAACCCAGATGGGGCTTCTCTGTTGGATTGGAACCGCAGGCTTAAAATTGCAGCAGGGGCAGCAAGAGGGCTTCAGTACTTGCATCAAGGAGTTGCTCCAAATATTGTTCATGGATGTGTGAAGGCTTCAAATATCTTGATTGATGTGAAATTCTGTGCTAGGGTTTGTGATTATGGTCTATCATTTTTGGCACCAAAAGAGAAGAGGGGTCTAGTTGGTCATGTGGATGATGAGTATTGGAGAGGAGGTGGTGTGTGCAAAGAGAGCGATATGTTTGGTTTTGGGGTGGTTCTGTTGGAACTTCTGAGTGGGAGACGATGTGATGAAGGGTTTCTAGTGAAATGGGCAATGCCATTGATTCAGGAGATGAGGTTTACTGAGTTTTTGGACCCAAGACTTGTTATTCCTCATGACATTAGGCCTCTTGTCAGATTGACCAAAGTTGCCTCGACTTGTGTTAGTAATTCCAGAAAGAGCAGACGTTCAATTAGTCAAGTTGCAACTATCCTCAACAATTTGGAGATAGATTCAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

337

Amino Acids

37.45

Weight (kDa)

8.81

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	72 - 266	1.2e-19	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	74 - 327	2.6e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46080
fragaria_vesca	FvH4_3g08510
malus_domestica	MD05G1309800.v1.1 MD10G1288400.v1.1
prunus_persica	Prupe.4G053200_v2.0.a1
pyrus_communis	pycom05g28620
rosa_chinensis	RchiOBHm_Chr5g0009231 RchiOBHm_Chr5g0009321
rosa_laevigata	RLG00000031651
rosa_multiflora	Rmu_co8140636.1_g000001 Rmu_sc0006233.1_g000002 Rmu_sc0006233.1_g000028
rosa_roxburghii	Rroxscaffold_1G00066770 Rroxscaffold_1G00067470
rosa_rugosa	Rorug04G0441700 Rorug04G0441800 Rorug04G0441800
rosa_samantha	Rh5AG072500 Rh5BG068800 Rh5CG081400 Rh5DG068100 Rh5DG069100
rosa_wichuraiana	Rw5G006680 Rw5G006770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	3 cut(s)	217, 287, 511
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	300, 626
AcuI	CTGAAG	2 cut(s)	156, 533
AfaI	GTAC	2 cut(s)	404, 554
AfiI	CCNNNNNNNGG	3 cut(s)	398, 399, 487
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	5 cut(s)	214, 345, 606, 963, 1008
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	415
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	2 cut(s)	66, 784
AoxI	GGCC	3 cut(s)	238, 288, 896
ApeKI	GCWGC	3 cut(s)	260, 527, 536
ApoI	RAATTY	2 cut(s)	300, 626
Asp700I	GAANNNNTTC	2 cut(s)	304, 807
AspS9I	GGNCC	2 cut(s)	238, 865
AsuHPI	GGTGA	1 cut(s)	245
AsuII	TTCGAA	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	865
BaeGI	GKGCMC	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	667
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	247, 539, 548
BccI	CCATC	2 cut(s)	200, 479
BceAI	ACGGC	1 cut(s)	225
BcgI	CGANNNNNNTGC	4 cut(s)	176, 208, 210, 242
BciT130I	CCWGG	1 cut(s)	417
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	66, 784
BfaI	CTAG	3 cut(s)	636, 689, 812
BisI	GCNGC	4 cut(s)	261, 288, 528, 537
BlsI	GCNGC	4 cut(s)	262, 289, 529, 538
BmcAI	AGTACT	1 cut(s)	554
Bme1390I	CCNGG	1 cut(s)	417
Bme18I	GGWCC	1 cut(s)	865
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	238, 865
BmiI	GGNNCC	3 cut(s)	509, 669, 867
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	3 cut(s)	184, 481, 568
Bpu14I	TTCGAA	1 cut(s)	270
BsaXI	ACNNNNNCTCC	8 cut(s)	709, 714, 739, 744, 781, 811, 833, 863
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 399, 487
Bse3DI	GCAATG	1 cut(s)	831
BseBI	CCWGG	1 cut(s)	417
BseGI	GGATG	2 cut(s)	596, 709
BseLI	CCNNNNNNNGG	3 cut(s)	398, 399, 487
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	3 cut(s)	420, 773, 846
BseRI	GAGGAG	2 cut(s)	89, 735
BseSI	GKGCMC	1 cut(s)	393
BseXI	GCAGC	3 cut(s)	247, 539, 548
BseYI	CCCAGC	1 cut(s)	151
BshFI	GGCC	3 cut(s)	240, 290, 898
BshNI	GGYRCC	1 cut(s)	667
BsiHKAI	GWGCWC	1 cut(s)	122
BslI	CCNNNNNNNGG	3 cut(s)	398, 399, 487
BsmAI	GTCTC	2 cut(s)	66, 784
BsmBI	CGTCTC	2 cut(s)	66, 784
BsnI	GGCC	3 cut(s)	240, 290, 898
Bsp119I	TTCGAA	1 cut(s)	270
Bsp1286I	GDGCHC	2 cut(s)	122, 393
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	3 cut(s)	217, 287, 511
BspANI	GGCC	3 cut(s)	240, 290, 898
BspCNI	CTCAG	3 cut(s)	419, 774, 847
BspHI	TCATGA	1 cut(s)	886
BspLI	GGNNCC	3 cut(s)	509, 669, 867
BspT104I	TTCGAA	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	667
BsrDI	GCAATG	1 cut(s)	831
BssMI	GATC	1 cut(s)	127
BssNAI	GTATAC	1 cut(s)	175
Bst1107I	GTATAC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	3 cut(s)	11, 145, 253
Bst6I	CTCTTC	2 cut(s)	290, 674
BstBI	TTCGAA	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	515
BstDEI	CTNAG	4 cut(s)	156, 406, 782, 855
BstF5I	GGATG	2 cut(s)	596, 709
BstKTI	GATC	1 cut(s)	130
BstMAI	GTCTC	2 cut(s)	66, 784
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 533, 536, 741
BstNI	CCWGG	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	415
BstSLI	GKGCMC	1 cut(s)	393
BstV1I	GCAGC	3 cut(s)	247, 539, 548
BstZ17I	GTATAC	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	240, 290, 898
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	596, 709
BtsIMutI	CAGTG	2 cut(s)	16, 120
Cac8I	GCNNGC	1 cut(s)	515
CciI	TCATGA	1 cut(s)	886
Cfr13I	GGNCC	2 cut(s)	238, 865
CsiI	ACCWGGT	1 cut(s)	415
Csp6I	GTAC	2 cut(s)	403, 553
CviAII	CATG	6 cut(s)	17, 292, 433, 587, 698, 887
CviQI	GTAC	2 cut(s)	403, 553
DdeI	CTNAG	4 cut(s)	156, 406, 782, 855
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	2 cut(s)	290, 674
EarI	CTCTTC	2 cut(s)	290, 674
Eco147I	AGGCCT	1 cut(s)	898
Eco47I	GGWCC	1 cut(s)	865
Eco57I	CTGAAG	2 cut(s)	156, 533
EcoRI	GAATTC	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	415
Esp3I	CGTCTC	2 cut(s)	66, 784
FaeI	CATG	6 cut(s)	20, 295, 436, 590, 701, 890
FatI	CATG	6 cut(s)	16, 291, 432, 586, 697, 886
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	261, 288, 528, 537
FokI	GGATG	2 cut(s)	603, 716
Fsp4HI	GCNGC	4 cut(s)	261, 288, 528, 537
FspBI	CTAG	3 cut(s)	636, 689, 812
GluI	GCNGC	4 cut(s)	261, 288, 528, 537
GsaI	CCCAGC	1 cut(s)	155
HaeIII	GGCC	3 cut(s)	240, 290, 898
Hin1II	CATG	6 cut(s)	20, 295, 436, 590, 701, 890
HinfI	GANTC	5 cut(s)	4, 225, 423, 835, 1004
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	175, 852
Hpy188I	TCNGA	5 cut(s)	93, 136, 409, 783, 908
Hpy188III	TCNNGA	5 cut(s)	345, 613, 839, 887, 945
Hpy8I	GTNNAC	2 cut(s)	175, 852
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	592, 797
HpyCH4III	ACNGT	3 cut(s)	11, 145, 253
HpyCH4IV	ACGT	3 cut(s)	59, 958, 1010
HpyCH4V	TGCA	7 cut(s)	105, 263, 472, 527, 559, 735, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 533, 536, 741
HpyF3I	CTNAG	4 cut(s)	156, 406, 782, 855
HpySE526I	ACGT	3 cut(s)	59, 958, 1010
Hsp92II	CATG	6 cut(s)	20, 295, 436, 590, 701, 890
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	577
LpnPI	CCDG	9 cut(s)	165, 181, 402, 429, 495, 499, 516, 824, 958
Lsp1109I	GCAGC	3 cut(s)	247, 539, 548
LweI	GCATC	3 cut(s)	184, 481, 568
MabI	ACCWGGT	1 cut(s)	415
MaeI	CTAG	3 cut(s)	636, 689, 812
MaeII	ACGT	3 cut(s)	59, 958, 1010
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	6 cut(s)	80, 121, 149, 234, 307, 691
MhlI	GDGCHC	2 cut(s)	122, 393
MluCI	AATT	6 cut(s)	300, 522, 626, 940, 963, 991
MmeI	TCCRAC	2 cut(s)	480, 753
MroXI	GAANNNNTTC	2 cut(s)	304, 807
MseI	TTAA	2 cut(s)	54, 519
MslI	CAYNNNNRTG	4 cut(s)	381, 431, 591, 702
MspR9I	CCNGG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	4 cut(s)	216, 533, 536, 741
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	6 cut(s)	20, 295, 436, 590, 701, 890
NlaIV	GGNNCC	3 cut(s)	509, 669, 867
NmuCI	GTSAC	1 cut(s)	11
NspV	TTCGAA	1 cut(s)	270
PagI	TCATGA	1 cut(s)	886
PceI	AGGCCT	1 cut(s)	898
PdmI	GAANNNNTTC	2 cut(s)	304, 807
PfeI	GAWTC	5 cut(s)	4, 225, 423, 835, 1004
PkrI	GCNGC	4 cut(s)	262, 289, 529, 538
Psp6I	CCWGG	1 cut(s)	415
PspFI	CCCAGC	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	3 cut(s)	509, 669, 867
PspPI	GGNCC	2 cut(s)	238, 865
RsaI	GTAC	2 cut(s)	404, 554
RsaNI	GTAC	2 cut(s)	403, 553
RseI	CAYNNNNRTG	4 cut(s)	381, 431, 591, 702
SaqAI	TTAA	2 cut(s)	54, 519
SatI	GCNGC	4 cut(s)	261, 288, 528, 537
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	2 cut(s)	238, 865
ScaI	AGTACT	1 cut(s)	554
ScrFI	CCNGG	1 cut(s)	417
SduI	GDGCHC	2 cut(s)	122, 393
SetI	ASST	9 cut(s)	39, 62, 157, 421, 448, 727, 851, 961, 1013
SexAI	ACCWGGT	1 cut(s)	415
SfaNI	GCATC	3 cut(s)	184, 481, 568
SfuI	TTCGAA	1 cut(s)	270
SinI	GGWCC	1 cut(s)	865
SmiMI	CAYNNNNRTG	4 cut(s)	381, 431, 591, 702
Sse9I	AATT	6 cut(s)	300, 522, 626, 940, 963, 991
SseBI	AGGCCT	1 cut(s)	898
SsiI	CCGC	3 cut(s)	217, 287, 511
SspI	AATATT	3 cut(s)	267, 328, 580
SspMI	CTAG	3 cut(s)	636, 689, 812
StuI	AGGCCT	1 cut(s)	898
StyD4I	CCNGG	1 cut(s)	415
TaaI	ACNGT	3 cut(s)	11, 145, 253
TaiI	ACGT	3 cut(s)	62, 961, 1013
TaqI	TCGA	3 cut(s)	270, 308, 926
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	6 cut(s)	300, 522, 626, 940, 963, 991
TatI	WGTACW	1 cut(s)	552
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	5 cut(s)	4, 225, 423, 835, 1004
Tru1I	TTAA	2 cut(s)	54, 519
Tru9I	TTAA	2 cut(s)	54, 519
TscAI	CASTG	2 cut(s)	16, 127
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	3 cut(s)	260, 527, 536
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	6 cut(s)	11, 17, 293, 308, 575, 816
TspRI	CASTG	2 cut(s)	16, 127
VpaK11BI	GGWCC	1 cut(s)	865
XapI	RAATTY	2 cut(s)	300, 626
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	2 cut(s)	304, 807
XspI	CTAG	3 cut(s)	636, 689, 812
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.