Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007876

Physical Location & Seq

Genomic Coordinates Forward (+)

2569108 .. 2570895

Gene Structure 1788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G053200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAATCACAGTGAACATATTGCCTATCTTTTTGTCATAGCCCTCCTTTCCACATCTGTTGTTGTTCTTGGTGTTGTCCTTGGTCTCCTCCTCCTTTGCAAGAAAAAGCCAGTTCAATCCCAAGAAACAGTGACACCAATCAAGCCTAGTGCTCAGGTGTATCCACTAACCAATATAGATGCTGCCACAGATGGTTTCAATCATCATAGGATCGTCGGCGAGGGCCGGTTGGGAACTGTCTATGCTGCTATATTTGAGAAAGGGGAGATAGCAGCAGTGAAAAGAATCCATTCTAGGCATGGCTTACATATATCAATTTCTTCAGCTCAGCACCCCAATGTGGTACCAATAATTGGCTACTCAGAGGGGCCAGGTGAGAGAATCATAGTGATGGAGTTTGTAGGTATGGTGTGCTTAGATTTCTATCTGCATCAAAACCCAGAGGGGGCATCTTTGTTAGATTGGAACCACAGATTGAAAATTGCAGCAGGGGCAGCTAAAGGGCTTGAGTATTTGCATGAAGGAGTGGCACCAAATATAGTACATGGGTGTGTAAAGGCTTCAAACATTTTGATAGATGTAAATTTTTGTGCAAGGATTTGTGATTATGGGCTTTCATTTTTGGCACTCCAAGAGAAGAGAGGTCTAGTTGGGTATGTGGATGATGAGTATTGGAGAGGAAGTGGTGCTTGCAAGGAAAGTGATGTCTATGGATTTGGGATTGTTTTGTTAGAGCTTTTGAGTGGGAGATTATGCGAGGAGGGGAGGCTTGTGAATTGGGCATCGCCACTGATTAAGGAAATGAGAATTAGTGAGCTTTTGGACCCCAGACTTGTCCTTCCTGATGATATTGGGGCTCTTGTCAGATTGGCAAAAGTTGCTTCTGCTTGTGTTGGAAATTCCAGAAAAAGCAGGCCTTCAATTTGTCAAGTGGCAACTATCTTGAGCAACTTGGAGATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

322

Amino Acids

34.99

Weight (kDa)

6.46

Isoelectric Point (pI)

28.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46080
fragaria_vesca	FvH4_3g08510
malus_domestica	MD05G1309800.v1.1 MD10G1288400.v1.1
prunus_persica	Prupe.4G053200_v2.0.a1
pyrus_communis	pycom05g28620
rosa_chinensis	RchiOBHm_Chr5g0009231 RchiOBHm_Chr5g0009321
rosa_laevigata	RLG00000031651
rosa_multiflora	Rmu_co8140636.1_g000001 Rmu_sc0006233.1_g000002 Rmu_sc0006233.1_g000028
rosa_roxburghii	Rroxscaffold_1G00066770 Rroxscaffold_1G00067470
rosa_rugosa	Rorug04G0441700 Rorug04G0441800 Rorug04G0441800
rosa_samantha	Rh5AG072500 Rh5BG068800 Rh5CG081400 Rh5DG068100 Rh5DG069100
rosa_wichuraiana	Rw5G006680 Rw5G006770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	343
AccB1I	GGYRCC	2 cut(s)	343, 529
AccB7I	CCANNNNNTGG	1 cut(s)	353
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	2 cut(s)	583, 898
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	2 cut(s)	345, 543
AfiI	CCNNNNNNNGG	3 cut(s)	340, 353, 445
AgsI	TTSAA	5 cut(s)	116, 199, 478, 564, 921
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	4 cut(s)	326, 497, 736, 817
AluI	AGCT	4 cut(s)	326, 497, 736, 817
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	3 cut(s)	223, 368, 914
ApeKI	GCWGC	5 cut(s)	182, 245, 272, 485, 494
ApoI	RAATTY	2 cut(s)	583, 898
Asp700I	GAANNNNTTC	1 cut(s)	289
Asp718I	GGTACC	1 cut(s)	343
AspS9I	GGNCC	3 cut(s)	223, 368, 823
AsuHPI	GGTGA	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	823
BanI	GGYRCC	2 cut(s)	343, 529
BanII	GRGCYC	1 cut(s)	859
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	5 cut(s)	169, 232, 284, 497, 506
BccI	CCATC	3 cut(s)	185, 385, 952
BciT130I	CCWGG	1 cut(s)	372
BciVI	GTATCC	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	3 cut(s)	147, 294, 647
BfuI	GTATCC	1 cut(s)	171
BisI	GCNGC	5 cut(s)	183, 246, 273, 486, 495
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	5 cut(s)	184, 247, 274, 487, 496
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	823
BmgT120I	GGNCC	3 cut(s)	223, 368, 823
BmiI	GGNNCC	5 cut(s)	345, 369, 467, 531, 825
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	4 cut(s)	169, 439, 458, 791
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	2 cut(s)	527, 964
BsaBI	GATNNNNATC	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	667, 697
Bsc4I	CCNNNNNNNGG	3 cut(s)	340, 353, 445
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	1 cut(s)	667
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	3 cut(s)	340, 353, 445
BseMII	CTCAG	3 cut(s)	167, 341, 375
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	3 cut(s)	77, 80, 773
BseXI	GCAGC	5 cut(s)	169, 232, 284, 497, 506
BshFI	GGCC	3 cut(s)	225, 370, 916
BshNI	GGYRCC	2 cut(s)	343, 529
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	226
BslI	CCNNNNNNNGG	3 cut(s)	340, 353, 445
BsmAI	GTCTC	1 cut(s)	89
BsnI	GGCC	3 cut(s)	225, 370, 916
Bso31I	GGTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	154, 859
Bsp143I	GATC	1 cut(s)	210
Bsp1720I	GCTNAGC	1 cut(s)	327
BspANI	GGCC	3 cut(s)	225, 370, 916
BspCNI	CTCAG	3 cut(s)	166, 340, 374
BspLI	GGNNCC	5 cut(s)	345, 369, 467, 531, 825
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	2 cut(s)	343, 529
BspTNI	GGTCTC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	11, 130, 238
Bst6I	CTCTTC	1 cut(s)	632
BstAPI	GCANNNNNTGC	1 cut(s)	878
BstC8I	GCNNGC	2 cut(s)	691, 914
BstDEI	CTNAG	4 cut(s)	153, 327, 361, 415
BstF5I	GGATG	1 cut(s)	667
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	3 cut(s)	491, 494, 878
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstV1I	GCAGC	5 cut(s)	169, 232, 284, 497, 506
BsuI	GTATCC	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	225, 370, 916
BtgZI	GCGATG	1 cut(s)	768
BtsCI	GGATG	1 cut(s)	667
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	4 cut(s)	16, 135, 282, 788
Cac8I	GCNNGC	2 cut(s)	691, 914
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	3 cut(s)	223, 368, 823
Csp6I	GTAC	2 cut(s)	344, 542
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CviAII	CATG	3 cut(s)	299, 518, 545
CviQI	GTAC	2 cut(s)	344, 542
DdeI	CTNAG	4 cut(s)	153, 327, 361, 415
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	632
EarI	CTCTTC	1 cut(s)	632
Eco130I	CCWWGG	1 cut(s)	79
Eco147I	AGGCCT	1 cut(s)	916
Eco24I	GRGCYC	1 cut(s)	859
Eco31I	GGTCTC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	823
Eco57I	CTGAAG	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	859
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	3 cut(s)	302, 521, 548
FalI	AAGNNNNNCTT	4 cut(s)	673, 705, 901, 933
FatI	CATG	3 cut(s)	298, 517, 544
Fnu4HI	GCNGC	5 cut(s)	183, 246, 273, 486, 495
FokI	GGATG	1 cut(s)	674
FriOI	GRGCYC	1 cut(s)	859
Fsp4HI	GCNGC	5 cut(s)	183, 246, 273, 486, 495
FspBI	CTAG	3 cut(s)	147, 294, 647
GluI	GCNGC	5 cut(s)	183, 246, 273, 486, 495
HaeIII	GGCC	3 cut(s)	225, 370, 916
HapII	CCGG	1 cut(s)	226
Hin1II	CATG	3 cut(s)	302, 521, 548
HinfI	GANTC	3 cut(s)	4, 285, 381
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	2 cut(s)	364, 866
Hpy188III	TCNNGA	3 cut(s)	842, 903, 943
Hpy8I	GTNNAC	1 cut(s)	14
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	515, 848, 927
HpyCH4III	ACNGT	3 cut(s)	11, 130, 238
HpyCH4V	TGCA	6 cut(s)	99, 430, 485, 517, 593, 693
HpyF10VI	GCNNNNNNNGC	3 cut(s)	491, 494, 878
HpyF3I	CTNAG	4 cut(s)	153, 327, 361, 415
Hsp92II	CATG	3 cut(s)	302, 521, 548
KpnI	GGTACC	1 cut(s)	347
Kzo9I	GATC	1 cut(s)	210
Lsp1109I	GCAGC	5 cut(s)	169, 232, 284, 497, 506
LweI	GCATC	4 cut(s)	169, 439, 458, 791
MaeI	CTAG	3 cut(s)	147, 294, 647
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	2 cut(s)	312, 649
MhlI	GDGCHC	2 cut(s)	154, 859
MluCI	AATT	8 cut(s)	315, 351, 480, 583, 775, 807, 898, 921
MmeI	TCCRAC	1 cut(s)	874
MroXI	GAANNNNTTC	1 cut(s)	289
MseI	TTAA	1 cut(s)	795
MslI	CAYNNNNRTG	3 cut(s)	336, 389, 549
MspI	CCGG	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	3 cut(s)	491, 494, 878
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	3 cut(s)	302, 521, 548
NlaIV	GGNNCC	5 cut(s)	345, 369, 467, 531, 825
NmuCI	GTSAC	1 cut(s)	130
PceI	AGGCCT	1 cut(s)	916
PdmI	GAANNNNTTC	1 cut(s)	289
PfeI	GAWTC	3 cut(s)	4, 285, 381
PflMI	CCANNNNNTGG	1 cut(s)	353
PkrI	GCNGC	5 cut(s)	184, 247, 274, 487, 496
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	5 cut(s)	345, 369, 467, 531, 825
PspPI	GGNCC	3 cut(s)	223, 368, 823
RsaI	GTAC	2 cut(s)	345, 543
RsaNI	GTAC	2 cut(s)	344, 542
RseI	CAYNNNNRTG	3 cut(s)	336, 389, 549
SaqAI	TTAA	1 cut(s)	795
SatI	GCNGC	5 cut(s)	183, 246, 273, 486, 495
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	3 cut(s)	223, 368, 823
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	2 cut(s)	154, 859
SetI	ASST	8 cut(s)	159, 328, 376, 406, 499, 646, 738, 819
SfaNI	GCATC	4 cut(s)	169, 439, 458, 791
SinI	GGWCC	1 cut(s)	823
SmiMI	CAYNNNNRTG	3 cut(s)	336, 389, 549
SmlI	CTYRAG	2 cut(s)	506, 943
SmoI	CTYRAG	2 cut(s)	506, 943
Sse9I	AATT	8 cut(s)	315, 351, 480, 583, 775, 807, 898, 921
SseBI	AGGCCT	1 cut(s)	916
SspMI	CTAG	3 cut(s)	147, 294, 647
StuI	AGGCCT	1 cut(s)	916
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	3 cut(s)	11, 130, 238
TasI	AATT	8 cut(s)	315, 351, 480, 583, 775, 807, 898, 921
TatI	WGTACW	1 cut(s)	541
TfiI	GAWTC	3 cut(s)	4, 285, 381
Tru1I	TTAA	1 cut(s)	795
Tru9I	TTAA	1 cut(s)	795
TscAI	CASTG	4 cut(s)	16, 135, 282, 795
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	5 cut(s)	182, 245, 272, 485, 494
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	3 cut(s)	17, 534, 606
TspRI	CASTG	4 cut(s)	16, 135, 282, 795
Van91I	CCANNNNNTGG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	823
XapI	RAATTY	2 cut(s)	583, 898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	289
XspI	CTAG	3 cut(s)	147, 294, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.