Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007876

Physical Location & Seq

Genomic Coordinates Reverse (-)

4970932 .. 4971948

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAATCACAGTGACCATGTTCATTTTGCCTATTACTTTGCCATCTCCCTACTCACCACGTTTCTTATTGTTCTTGGTCTTGTTCTTCTTCTGATCCTCCTCTGCAAGAAGAAACACACTACTGATGATCAATCCGAAGAAGCGGTAATCCCAGCTAGGATTTGTCCCCGAGTGTACCCTTTAACCGATATTGATGTCGCCACGGATGGCTTCAACCGCAGAAGAATCGTCGGCGAGGGCCGTTTGGGAACTGTGTATGCTGCAATATTCGAAAAGGGGGAGATAGCAGCCGTGAAGAGAATTCATCCGAGGCTTGTGTTGGGAAATATTGGTTTCGGGTTTTCAAGAACACTAAGCTGTCTCTCATTGGCTCAACACCCTAATATAGTCCCCATTGTTGGATACTCAGAAGCACCAGGTGAGAGAGTCATTGTCATGGAATTTGTAGGTATGGTTTGTTTGGATTTTTACTTGCATCAAAACCCAGATGGGGGTTCTCTGTTGGATTGGAAACACAGGCTTAACATTGCAGCAGGTGCAGCAACAGGGCTTCAGTACTTGCATGAAGGAGTTGCTCCTAATATTGTTCATGGATGTGTGAAGGCTTCAAATATCTTGATCGATGTGAACTTCTATGCTAGGGTTTGTGATTATGGTCTATCATTCTTGGCACCAAAAGAGAAGAGGGGTTTAGTTGGTTATGTGGATGATGAGTATTGGAGGGGAGGTGGTGTGTGCAAAGAGAGCGATATGTATGGTTTTGGGGTGGTTCTGTTGGAACTTTTGAGTGGGAGACGATGTGAAGAAGGGTTTCTTGTGAAATGGGCATTGCCATTGATCAAGGAGATGAGGTTCAATGAGTTTCTGGACCCAAGACTTGTTTTTCCTCGTGACATTATGCCTCTTGTTAGAATGGCCAAAGTTGCTTCGACTTGTGTTAGTAATTCCAGAAAGAGCAGACCTTCGATTAGTCAGGTTGCAACTATCCTCAACAATTTGGAGATAGATTCAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

339

Amino Acids

37.6

Weight (kDa)

7.6

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	72 - 269	7.4e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	74 - 328	4e-26	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46080
fragaria_vesca	FvH4_3g08510
malus_domestica	MD05G1309800.v1.1 MD10G1288400.v1.1
prunus_persica	Prupe.4G053200_v2.0.a1
pyrus_communis	pycom05g28620
rosa_chinensis	RchiOBHm_Chr5g0009231 RchiOBHm_Chr5g0009321
rosa_laevigata	RLG00000031651
rosa_multiflora	Rmu_co8140636.1_g000001 Rmu_sc0006233.1_g000002 Rmu_sc0006233.1_g000028
rosa_roxburghii	Rroxscaffold_1G00066770 Rroxscaffold_1G00067470
rosa_rugosa	Rorug04G0441700 Rorug04G0441800 Rorug04G0441800
rosa_samantha	Rh5AG072500 Rh5BG068800 Rh5CG081400 Rh5DG068100 Rh5DG069100
rosa_wichuraiana	Rw5G006680 Rw5G006770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	524
Acc36I	ACCTGC	1 cut(s)	524
AccB1I	GGYRCC	1 cut(s)	670
AciI	CCGC	2 cut(s)	143, 217
AclWI	GGATC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	915
AcsI	RAATTY	2 cut(s)	300, 440
AcuI	CTGAAG	1 cut(s)	536
AdeI	CACNNNGTG	1 cut(s)	419
AfaI	GTAC	2 cut(s)	176, 557
AfiI	CCNNNNNNNGG	3 cut(s)	398, 490, 491
AgsI	TTSAA	5 cut(s)	214, 345, 609, 856, 1011
AjnI	CCWGG	1 cut(s)	415
AloI	GAACNNNNNNTCC	2 cut(s)	836, 868
AluBI	AGCT	2 cut(s)	155, 357
AluI	AGCT	2 cut(s)	155, 357
Alw26I	GTCTC	2 cut(s)	365, 787
AlwI	GGATC	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	2 cut(s)	238, 915
ApeKI	GCWGC	4 cut(s)	260, 287, 530, 539
ApoI	RAATTY	2 cut(s)	300, 440
Asp700I	GAANNNNTTC	1 cut(s)	810
AspS9I	GGNCC	2 cut(s)	238, 868
AsuHPI	GGTGA	2 cut(s)	46, 431
AsuII	TTCGAA	1 cut(s)	270
AvaI	CYCGRG	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	868
BalI	TGGCCA	1 cut(s)	917
BanI	GGYRCC	1 cut(s)	670
BauI	CACGAG	1 cut(s)	888
BbvI	GCAGC	4 cut(s)	247, 299, 542, 551
BccI	CCATC	3 cut(s)	50, 200, 482
BceAI	ACGGC	2 cut(s)	225, 275
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BciT130I	CCWGG	1 cut(s)	417
BciVI	GTATCC	1 cut(s)	395
BclI	TGATCA	2 cut(s)	127, 837
BcoDI	GTCTC	2 cut(s)	365, 787
BfaI	CTAG	2 cut(s)	156, 639
BfuAI	ACCTGC	1 cut(s)	524
BfuI	GTATCC	1 cut(s)	395
BisI	GCNGC	4 cut(s)	261, 288, 531, 540
BlsI	GCNGC	4 cut(s)	262, 289, 532, 541
BmcAI	AGTACT	1 cut(s)	557
Bme1390I	CCNGG	1 cut(s)	417
Bme18I	GGWCC	1 cut(s)	868
BmeT110I	CYCGRG	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	238, 868
BmiI	GGNNCC	2 cut(s)	672, 870
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	484
Bpu14I	TTCGAA	1 cut(s)	270
Bsa29I	ATCGAT	1 cut(s)	621
BsaJI	CCNNGG	2 cut(s)	201, 308
BsaXI	ACNNNNNCTCC	8 cut(s)	712, 717, 742, 747, 784, 814, 836, 866
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 490, 491
Bse3DI	GCAATG	2 cut(s)	525, 827
BseBI	CCWGG	1 cut(s)	417
BseCI	ATCGAT	1 cut(s)	621
BseDI	CCNNGG	2 cut(s)	201, 308
BseGI	GGATG	4 cut(s)	211, 304, 599, 712
BseLI	CCNNNNNNNGG	3 cut(s)	398, 490, 491
BseMI	GCAATG	2 cut(s)	525, 827
BseMII	CTCAG	1 cut(s)	420
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	4 cut(s)	247, 299, 542, 551
BseYI	CCCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	558
BshFI	GGCC	2 cut(s)	240, 917
BshNI	GGYRCC	1 cut(s)	670
BshVI	ATCGAT	1 cut(s)	621
BsiHKCI	CYCGRG	1 cut(s)	168
BslFI	GGGAC	2 cut(s)	150, 374
BslI	CCNNNNNNNGG	3 cut(s)	398, 490, 491
BsmAI	GTCTC	2 cut(s)	365, 787
BsmBI	CGTCTC	1 cut(s)	787
BsmFI	GGGAC	2 cut(s)	150, 374
BsnI	GGCC	2 cut(s)	240, 917
BsoBI	CYCGRG	1 cut(s)	168
Bsp119I	TTCGAA	1 cut(s)	270
Bsp143I	GATC	4 cut(s)	93, 127, 618, 837
BspACI	CCGC	2 cut(s)	143, 217
BspANI	GGCC	2 cut(s)	240, 917
BspCNI	CTCAG	1 cut(s)	419
BspDI	ATCGAT	1 cut(s)	621
BspLI	GGNNCC	2 cut(s)	672, 870
BspMI	ACCTGC	1 cut(s)	524
BspPI	GGATC	1 cut(s)	88
BspT104I	TTCGAA	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	670
BsrDI	GCAATG	2 cut(s)	525, 827
BssECI	CCNNGG	2 cut(s)	201, 308
BssMI	GATC	4 cut(s)	93, 127, 618, 837
BssSI	CACGAG	1 cut(s)	888
Bst2BI	CACGAG	1 cut(s)	888
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	2 cut(s)	11, 253
Bst6I	CTCTTC	2 cut(s)	290, 677
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstBI	TTCGAA	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	353, 406
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	4 cut(s)	211, 304, 599, 712
BstKTI	GATC	4 cut(s)	96, 130, 621, 840
BstMAI	GTCTC	2 cut(s)	365, 787
BstMBI	GATC	4 cut(s)	93, 127, 618, 837
BstMWI	GCNNNNNNNGC	5 cut(s)	216, 536, 539, 744, 923
BstNI	CCWGG	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	415
BstV1I	GCAGC	4 cut(s)	247, 299, 542, 551
Bsu15I	ATCGAT	1 cut(s)	621
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	240, 917
BsuTUI	ATCGAT	1 cut(s)	621
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	4 cut(s)	211, 304, 599, 712
BtsIMutI	CAGTG	1 cut(s)	16
BveI	ACCTGC	1 cut(s)	524
Cfr13I	GGNCC	2 cut(s)	238, 868
ClaI	ATCGAT	1 cut(s)	621
CsiI	ACCWGGT	1 cut(s)	415
Csp6I	GTAC	2 cut(s)	175, 556
CviAII	CATG	4 cut(s)	17, 436, 563, 590
CviQI	GTAC	2 cut(s)	175, 556
DdeI	CTNAG	2 cut(s)	353, 406
DpnI	GATC	4 cut(s)	95, 129, 620, 839
DpnII	GATC	4 cut(s)	93, 127, 618, 837
DraIII	CACNNNGTG	1 cut(s)	419
EaeI	YGGCCR	1 cut(s)	915
Eam1104I	CTCTTC	2 cut(s)	290, 677
EarI	CTCTTC	2 cut(s)	290, 677
Eco47I	GGWCC	1 cut(s)	868
Eco57I	CTGAAG	1 cut(s)	536
Eco88I	CYCGRG	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	415
Esp3I	CGTCTC	1 cut(s)	787
FaeI	CATG	4 cut(s)	20, 439, 566, 593
FalI	AAGNNNNNCTT	2 cut(s)	798, 830
FaqI	GGGAC	2 cut(s)	150, 374
FatI	CATG	4 cut(s)	16, 435, 562, 589
FbaI	TGATCA	2 cut(s)	127, 837
Fnu4HI	GCNGC	4 cut(s)	261, 288, 531, 540
FokI	GGATG	4 cut(s)	218, 291, 606, 719
Fsp4HI	GCNGC	4 cut(s)	261, 288, 531, 540
FspBI	CTAG	2 cut(s)	156, 639
GluI	GCNGC	4 cut(s)	261, 288, 531, 540
GsaI	CCCAGC	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	240, 917
Hin1II	CATG	4 cut(s)	20, 439, 566, 593
HinfI	GANTC	4 cut(s)	4, 225, 426, 1007
HphI	GGTGA	2 cut(s)	46, 431
Hpy166II	GTNNAC	2 cut(s)	175, 628
Hpy188I	TCNGA	4 cut(s)	93, 136, 309, 409
Hpy188III	TCNNGA	5 cut(s)	345, 616, 866, 890, 948
Hpy8I	GTNNAC	2 cut(s)	175, 628
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	4 cut(s)	560, 595, 800, 972
HpyCH4III	ACNGT	2 cut(s)	11, 253
HpyCH4IV	ACGT	2 cut(s)	59, 1013
HpyCH4V	TGCA	8 cut(s)	105, 263, 475, 530, 539, 562, 738, 980
HpyF10VI	GCNNNNNNNGC	5 cut(s)	216, 536, 539, 744, 923
HpyF3I	CTNAG	2 cut(s)	353, 406
HpySE526I	ACGT	2 cut(s)	59, 1013
Hsp92II	CATG	4 cut(s)	20, 439, 566, 593
Ksp22I	TGATCA	2 cut(s)	127, 837
Kzo9I	GATC	4 cut(s)	93, 127, 618, 837
LmnI	GCTCC	1 cut(s)	580
Lsp1109I	GCAGC	4 cut(s)	247, 299, 542, 551
LweI	GCATC	1 cut(s)	484
MabI	ACCWGGT	1 cut(s)	415
MaeI	CTAG	2 cut(s)	156, 639
MaeII	ACGT	2 cut(s)	59, 1013
MaeIII	GTNAC	2 cut(s)	11, 890
MalI	GATC	4 cut(s)	95, 129, 620, 839
MboI	GATC	4 cut(s)	93, 127, 618, 837
MboII	GAAGA	8 cut(s)	77, 80, 121, 149, 234, 307, 694, 815
MlsI	TGGCCA	1 cut(s)	917
MluCI	AATT	4 cut(s)	300, 440, 943, 994
MluNI	TGGCCA	1 cut(s)	917
MlyI	GAGTC	1 cut(s)	435
MmeI	TCCRAC	3 cut(s)	379, 483, 756
Mox20I	TGGCCA	1 cut(s)	917
MroXI	GAANNNNTTC	1 cut(s)	810
MscI	TGGCCA	1 cut(s)	917
MseI	TTAA	2 cut(s)	182, 522
MslI	CAYNNNNRTG	2 cut(s)	434, 594
Msp20I	TGGCCA	1 cut(s)	917
MspR9I	CCNGG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	5 cut(s)	216, 536, 539, 744, 923
NdeII	GATC	4 cut(s)	93, 127, 618, 837
NlaIII	CATG	4 cut(s)	20, 439, 566, 593
NlaIV	GGNNCC	2 cut(s)	672, 870
NmuCI	GTSAC	2 cut(s)	11, 890
NspV	TTCGAA	1 cut(s)	270
PaqCI	CACCTGC	1 cut(s)	524
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	3 cut(s)	4, 225, 1007
PkrI	GCNGC	4 cut(s)	262, 289, 532, 541
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	415
PspFI	CCCAGC	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	672, 870
PspPI	GGNCC	2 cut(s)	238, 868
RsaI	GTAC	2 cut(s)	176, 557
RsaNI	GTAC	2 cut(s)	175, 556
RseI	CAYNNNNRTG	2 cut(s)	434, 594
SaqAI	TTAA	2 cut(s)	182, 522
SatI	GCNGC	4 cut(s)	261, 288, 531, 540
Sau3AI	GATC	4 cut(s)	93, 127, 618, 837
Sau96I	GGNCC	2 cut(s)	238, 868
ScaI	AGTACT	1 cut(s)	557
SchI	GAGTC	1 cut(s)	435
ScrFI	CCNGG	1 cut(s)	417
SexAI	ACCWGGT	1 cut(s)	415
SfaNI	GCATC	1 cut(s)	484
SfuI	TTCGAA	1 cut(s)	270
SinI	GGWCC	1 cut(s)	868
SmiMI	CAYNNNNRTG	2 cut(s)	434, 594
Sse9I	AATT	4 cut(s)	300, 440, 943, 994
SsiI	CCGC	2 cut(s)	143, 217
SspI	AATATT	3 cut(s)	267, 328, 583
SspMI	CTAG	2 cut(s)	156, 639
StyD4I	CCNGG	1 cut(s)	415
TaaI	ACNGT	2 cut(s)	11, 253
TaiI	ACGT	2 cut(s)	62, 1016
TaqI	TCGA	4 cut(s)	270, 621, 929, 965
TasI	AATT	4 cut(s)	300, 440, 943, 994
TatI	WGTACW	1 cut(s)	555
TfiI	GAWTC	3 cut(s)	4, 225, 1007
Tru1I	TTAA	2 cut(s)	182, 522
Tru9I	TTAA	2 cut(s)	182, 522
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	2 cut(s)	11, 890
TseI	GCWGC	4 cut(s)	260, 287, 530, 539
Tsp45I	GTSAC	2 cut(s)	11, 890
TspDTI	ATGAA	5 cut(s)	11, 17, 293, 578, 579
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	868
XapI	RAATTY	2 cut(s)	300, 440
XmnI	GAANNNNTTC	1 cut(s)	810
XspI	CTAG	2 cut(s)	156, 639
ZrmI	AGTACT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.