Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004458

Physical Location & Seq

Genomic Coordinates Reverse (-)

19465788 .. 19469939

Gene Structure 4152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGTCCCTTCCAATGGCGCAAAGGTTCTTCGCTTGTTGAGTCGTCGATGTCTCTCTTCATCGCTTATTCAAGATTTAGCCAATCAGAAACTGAGAGGAGTATGTATTGGGAGTTATAGGAGATTGAATACGAGTGTTGGCAATCATGCTAACGTGATTGGAGATTACGCTTCAAAATCTGGACATGATCGGAAATGGATCAACTTTGGAGGTTTTAATACTAATTTTGGTTCTACAAGGTCTTTTCATGGAACAGGTTCTTCGTTTATGTCTGCTAAGGACTACTATAGTGTTCTTGGAGTGAGTAAGAATGCTCAAGAAGGTGAAATCAAGAAGGCTTATTATGGGCTTGCTAAGAAACTCCATCCTGATATGAATAAAGATGATCCAGAAGCTGAGACGAAGTTCCAGGAAGTCTCAAAAGCATATGAAATTTTGAAAGATAAGGAGAAGCGTGACCTTTATGACCAGGTTGGTCATGAAGCATTTGAGCAAAATGCTAGTGGTGGATTTCCAAATGATCAAGGCTTCGGTGGTGGTGGTGGTGGTGGGTTTAACCCATTTGATATCTTTGGGAGCTTCAATGGCGATATTTTTAACATGTACCGGCAAGATATTGGAGGTCAAGATGTCAAGGTTTTGCTTGATCTTTCTTTCATGGAAGCTGTTCAAGGATGCTCCAAAACTGTGACTTTTCAAACCGAGATGGCTTGTAATACTTGTGGTGGACAAGGTGTTCCTCCTGGTACCAAACGAGAGAAATGCAAAGCCTGTAATGGCTCTGGGATGACCTCACTGAGGAGGGGTATGTTAAGCATCCAAACAACTTGCCAGAAGTGTGGTGGAGCTGGTCAAACGTTCTCAAGTATTTGCAAATCCTGTAGAGGGGCTAGAGTGGTTCGAGGACAGAAGTCAGTGAAAGTCACTATTGATCCAGGGGTTGACAATAGTGATACATTAAAGGTGGCAAGGGTGGGTGGGGCTGATCCTGAAGGTGACCAGCCTGGAGATCTTTATGTTACTCTCAAGGTTCGTGAAGATCCTGTGTTCCGCAGAGAAGGATCGGATATTCATGTGGACGCGGTTCTCAGTGTTACCCAGGCCATTCTTGGAGGAACCATTCAAGTTCCAACCCTCACTGGTGATGTTGTCGTGAAGGTCCGTCCTGGAACCCAACCTGGTCACAAAGTAGTGCTAAGAAATAAAGGAATTAGAGCAAGAAAGTCGACTAAATTTGGGGATCAGTATGTGCATTTCAACGTCAGCATCCCTGCAAATATAACGCAGAGACAGCGTGAACTGCTTGAGGAATTTAGTAAAGCAGAACAAGGTGAATACGAGCAGCGCACAGCAACTGGATCTTCCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000740 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006458 GO:0006996 GO:0006997 GO:0007275 GO:0007349 GO:0008150 GO:0008219 GO:0009553 GO:0009558 GO:0009559 GO:0009561 GO:0009653 GO:0009856 GO:0009987 GO:0010197 GO:0010198 GO:0010623 GO:0012501 GO:0016043 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048229 GO:0048284 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051084 GO:0051085 GO:0051704 GO:0061024 GO:0061025 GO:0061077 GO:0071840 GO:0090174

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

456

Amino Acids

49.44

Weight (kDa)

9.09

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	94 - 156	2.4e-26	DnaJ domain
DnaJ_C	PF01556	212 - 424	2.8e-43	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	238 - 297	2.4e-11	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48030
fragaria_vesca	FvH4_2g18630 FvH4_2g18630 FvH4_7g00600 FvH4_7g00600 FvH4_7g00600
malus_domestica	MD02G1316500.v1.1
prunus_persica	Prupe.2G007700_v2.0.a1
pyrus_communis	pycom02g26520
rosa_chinensis	RchiOBHm_Chr1g0314781 RchiOBHm_Chr6g0284191
rosa_laevigata	RLG00000012758 RLG00000030764
rosa_multiflora	Rmu_sc0002833.1_g000038 Rmu_sc0003778.1_g000002
rosa_roxburghii	Rroxscaffold_4G00331880 Rroxscaffold_7G00184800
rosa_rugosa	Rorug01G0001800 Rorug01G0001800 Rorug06G0161800
rosa_samantha	Rh1AG012700 Rh1BG004300 Rh1CG011200 Rh1DG006000 Rh6AG274600 Rh6BG275100 Rh6CG064000 Rh6CG276800 Rh6DG061100 Rh6DG269400
rosa_wichuraiana	Rw1G000530 Rw6G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	746
AccB1I	GGYRCC	1 cut(s)	746
AccI	GTMKAC	1 cut(s)	1226
AccII	CGCG	1 cut(s)	1082
AciI	CCGC	2 cut(s)	1051, 1082
AclI	AACGTT	1 cut(s)	857
AclWI	GGATC	8 cut(s)	206, 380, 926, 980, 1034, 1069, 1248, 1366
AcsI	RAATTY	3 cut(s)	432, 1232, 1310
AcuI	CTGAAG	1 cut(s)	1011
AfaI	GTAC	2 cut(s)	605, 748
AfiI	CCNNNNNNNGG	3 cut(s)	14, 798, 885
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	9 cut(s)	71, 127, 174, 439, 583, 671, 698, 1124, 1258
AjnI	CCWGG	8 cut(s)	408, 468, 742, 934, 1003, 1098, 1165, 1177
AloI	GAACNNNNNNTCC	2 cut(s)	720, 752
AluBI	AGCT	4 cut(s)	395, 579, 665, 848
AluI	AGCT	4 cut(s)	395, 579, 665, 848
Alw26I	GTCTC	4 cut(s)	56, 392, 421, 1282
AlwI	GGATC	8 cut(s)	206, 380, 926, 980, 1034, 1069, 1248, 1366
AlwNI	CAGNNNCTG	3 cut(s)	91, 395, 1355
AoxI	GGCC	1 cut(s)	1101
ApeKI	GCWGC	1 cut(s)	1342
ApoI	RAATTY	3 cut(s)	432, 1232, 1310
Asp700I	GAANNNNTTC	2 cut(s)	256, 666
Asp718I	GGTACC	1 cut(s)	746
AspLEI	GCGC	2 cut(s)	20, 1347
AspS9I	GGNCC	2 cut(s)	4, 1159
AsuHPI	GGTGA	4 cut(s)	335, 1007, 1154, 1343
AvaII	GGWCC	2 cut(s)	4, 1159
BanI	GGYRCC	1 cut(s)	746
BbvI	GCAGC	1 cut(s)	1354
BccI	CCATC	2 cut(s)	372, 700
BcgI	CGANNNNNNTGC	4 cut(s)	744, 778, 1206, 1240
BciT130I	CCWGG	8 cut(s)	410, 470, 744, 936, 1005, 1100, 1167, 1179
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	4 cut(s)	56, 392, 421, 1282
BfaI	CTAG	2 cut(s)	501, 891
BfmI	CTRYAG	2 cut(s)	286, 880
BglII	AGATCT	1 cut(s)	1009
BisI	GCNGC	1 cut(s)	1343
BlsI	GCNGC	1 cut(s)	1344
Bme1390I	CCNGG	8 cut(s)	410, 470, 744, 936, 1005, 1100, 1167, 1179
Bme18I	GGWCC	2 cut(s)	4, 1159
BmgT120I	GGNCC	2 cut(s)	4, 1159
BmiI	GGNNCC	4 cut(s)	6, 748, 1117, 1171
BmrFI	CCNGG	8 cut(s)	410, 470, 744, 936, 1005, 1100, 1167, 1179
BmrI	ACTGGG	1 cut(s)	1360
BmsI	GCATC	3 cut(s)	665, 825, 1275
BmuI	ACTGGG	1 cut(s)	1360
BoxI	GACNNNNGTC	1 cut(s)	910
BpmI	CTGGAG	1 cut(s)	1026
Bpu10I	CCTNAGC	1 cut(s)	276
BpuEI	CTTGAG	4 cut(s)	300, 847, 1010, 1325
BsaJI	CCNNGG	2 cut(s)	935, 1098
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 798, 885
Bse118I	RCCGGY	1 cut(s)	606
Bse1I	ACTGG	3 cut(s)	1144, 1360, 1366
BseBI	CCWGG	8 cut(s)	410, 470, 744, 936, 1005, 1100, 1167, 1179
BseDI	CCNNGG	2 cut(s)	935, 1098
BseGI	GGATG	5 cut(s)	364, 680, 792, 816, 1266
BseLI	CCNNNNNNNGG	3 cut(s)	14, 798, 885
BseMII	CTCAG	4 cut(s)	83, 387, 788, 1102
BseNI	ACTGG	3 cut(s)	1144, 1360, 1366
BseRI	GAGGAG	2 cut(s)	111, 814
BseXI	GCAGC	1 cut(s)	1354
Bsh1236I	CGCG	1 cut(s)	1082
BshFI	GGCC	1 cut(s)	1103
BshNI	GGYRCC	1 cut(s)	746
BsiSI	CCGG	1 cut(s)	607
BslI	CCNNNNNNNGG	3 cut(s)	14, 798, 885
BsmAI	GTCTC	4 cut(s)	56, 392, 421, 1282
BsmBI	CGTCTC	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	1103
BspACI	CCGC	2 cut(s)	1051, 1082
BspANI	GGCC	1 cut(s)	1103
BspCNI	CTCAG	4 cut(s)	84, 388, 789, 1101
BspFNI	CGCG	1 cut(s)	1082
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	4 cut(s)	6, 748, 1117, 1171
BspPI	GGATC	8 cut(s)	206, 380, 926, 980, 1034, 1069, 1248, 1366
BspT107I	GGYRCC	1 cut(s)	746
BsrFI	RCCGGY	1 cut(s)	606
BsrI	ACTGG	3 cut(s)	1144, 1360, 1366
BssAI	RCCGGY	1 cut(s)	606
BssECI	CCNNGG	2 cut(s)	935, 1098
Bst2UI	CCWGG	8 cut(s)	410, 470, 744, 936, 1005, 1100, 1167, 1179
Bst4CI	ACNGT	1 cut(s)	688
Bst6I	CTCTTC	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	7 cut(s)	92, 276, 354, 396, 797, 1088, 1196
BstEII	GGTNACC	1 cut(s)	995
BstENI	CCTNNNNNAGG	1 cut(s)	796
BstF5I	GGATG	5 cut(s)	364, 680, 792, 816, 1266
BstFNI	CGCG	1 cut(s)	1082
BstHHI	GCGC	2 cut(s)	20, 1347
BstMAI	GTCTC	4 cut(s)	56, 392, 421, 1282
BstMWI	GCNNNNNNNGC	3 cut(s)	585, 1291, 1300
BstNI	CCWGG	8 cut(s)	410, 470, 744, 936, 1005, 1100, 1167, 1179
BstNSI	RCATGY	1 cut(s)	604
BstPAI	GACNNNNGTC	1 cut(s)	910
BstPI	GGTNACC	1 cut(s)	995
BstSCI	CCNGG	8 cut(s)	408, 468, 742, 934, 1003, 1098, 1165, 1177
BstSFI	CTRYAG	2 cut(s)	286, 880
BstUI	CGCG	1 cut(s)	1082
BstV1I	GCAGC	1 cut(s)	1354
BstX2I	RGATCY	3 cut(s)	1009, 1039, 1358
BstXI	CCANNNNNNTGG	1 cut(s)	839
BstYI	RGATCY	3 cut(s)	1009, 1039, 1358
BsuRI	GGCC	1 cut(s)	1103
BtgZI	GCGATG	1 cut(s)	45
BtsCI	GGATG	5 cut(s)	364, 680, 792, 816, 1266
BtsIMutI	CAGTG	4 cut(s)	794, 921, 1096, 1137
Cac8I	GCNNGC	1 cut(s)	351
CaiI	CAGNNNCTG	3 cut(s)	91, 395, 1355
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	2 cut(s)	20, 1347
Cfr10I	RCCGGY	1 cut(s)	606
Cfr13I	GGNCC	2 cut(s)	4, 1159
CseI	GACGC	1 cut(s)	1088
CsiI	ACCWGGT	2 cut(s)	468, 1177
Csp6I	GTAC	2 cut(s)	604, 747
CviAII	CATG	7 cut(s)	146, 185, 248, 479, 601, 658, 1073
CviQI	GTAC	2 cut(s)	604, 747
DdeI	CTNAG	7 cut(s)	92, 276, 354, 396, 797, 1088, 1196
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco32I	GATATC	1 cut(s)	568
Eco47I	GGWCC	2 cut(s)	4, 1159
Eco57I	CTGAAG	1 cut(s)	1011
Eco91I	GGTNACC	1 cut(s)	995
EcoNI	CCTNNNNNAGG	1 cut(s)	796
EcoO65I	GGTNACC	1 cut(s)	995
EcoRII	CCWGG	8 cut(s)	408, 468, 742, 934, 1003, 1098, 1165, 1177
EcoRV	GATATC	1 cut(s)	568
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	7 cut(s)	149, 188, 251, 482, 604, 661, 1076
FatI	CATG	7 cut(s)	145, 184, 247, 478, 600, 657, 1072
FauNDI	CATATG	1 cut(s)	427
FbaI	TGATCA	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	1226
Fnu4HI	GCNGC	1 cut(s)	1343
FokI	GGATG	5 cut(s)	351, 687, 799, 803, 1253
Fsp4HI	GCNGC	1 cut(s)	1343
FspBI	CTAG	2 cut(s)	501, 891
GlaI	GCGC	2 cut(s)	19, 1346
GluI	GCNGC	1 cut(s)	1343
GsuI	CTGGAG	1 cut(s)	1026
HaeIII	GGCC	1 cut(s)	1103
HapII	CCGG	1 cut(s)	607
HgaI	GACGC	1 cut(s)	1088
HhaI	GCGC	2 cut(s)	20, 1347
Hin1II	CATG	7 cut(s)	149, 188, 251, 482, 604, 661, 1076
Hin6I	GCGC	2 cut(s)	18, 1345
HinP1I	GCGC	2 cut(s)	18, 1345
HincII	GTYRAC	2 cut(s)	943, 1227
HindII	GTYRAC	2 cut(s)	943, 1227
HinfI	GANTC	1 cut(s)	40
HpaII	CCGG	1 cut(s)	607
HphI	GGTGA	4 cut(s)	335, 1007, 1154, 1343
Hpy166II	GTNNAC	5 cut(s)	728, 943, 1078, 1227, 1298
Hpy188I	TCNGA	3 cut(s)	87, 192, 1066
Hpy8I	GTNNAC	5 cut(s)	728, 943, 1078, 1227, 1298
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	6 cut(s)	18, 314, 328, 986, 1052, 1150
HpyCH4III	ACNGT	1 cut(s)	688
HpyCH4IV	ACGT	3 cut(s)	153, 857, 1260
HpyCH4V	TGCA	4 cut(s)	765, 873, 1252, 1274
HpyF10VI	GCNNNNNNNGC	3 cut(s)	585, 1291, 1300
HpyF3I	CTNAG	7 cut(s)	92, 276, 354, 396, 797, 1088, 1196
HpySE526I	ACGT	3 cut(s)	153, 857, 1260
Hsp92II	CATG	7 cut(s)	149, 188, 251, 482, 604, 661, 1076
HspAI	GCGC	2 cut(s)	18, 1345
KpnI	GGTACC	1 cut(s)	750
Ksp22I	TGATCA	1 cut(s)	520
LmnI	GCTCC	3 cut(s)	576, 683, 845
Lsp1109I	GCAGC	1 cut(s)	1354
LweI	GCATC	3 cut(s)	665, 825, 1275
MabI	ACCWGGT	2 cut(s)	468, 1177
MaeI	CTAG	2 cut(s)	501, 891
MaeII	ACGT	3 cut(s)	153, 857, 1260
MaeIII	GTNAC	7 cut(s)	455, 688, 922, 995, 1018, 1093, 1181
MboII	GAAGA	5 cut(s)	20, 48, 252, 1049, 1353
MflI	RGATCY	3 cut(s)	1009, 1039, 1358
MluCI	AATT	5 cut(s)	223, 432, 1209, 1232, 1310
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	1154
MroXI	GAANNNNTTC	2 cut(s)	256, 666
MseI	TTAA	5 cut(s)	216, 555, 597, 812, 959
MspI	CCGG	1 cut(s)	607
MspR9I	CCNGG	8 cut(s)	410, 470, 744, 936, 1005, 1100, 1167, 1179
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	8 cut(s)	410, 470, 744, 936, 1005, 1100, 1167, 1179
MvnI	CGCG	1 cut(s)	1082
MwoI	GCNNNNNNNGC	3 cut(s)	585, 1291, 1300
NdeI	CATATG	1 cut(s)	427
NlaIII	CATG	7 cut(s)	149, 188, 251, 482, 604, 661, 1076
NlaIV	GGNNCC	4 cut(s)	6, 748, 1117, 1171
NmuCI	GTSAC	5 cut(s)	455, 688, 922, 995, 1181
NspI	RCATGY	1 cut(s)	604
PagI	TCATGA	1 cut(s)	478
PciI	ACATGT	1 cut(s)	600
PctI	GAATGC	1 cut(s)	316
PdmI	GAANNNNTTC	2 cut(s)	256, 666
PfoI	TCCNGGA	2 cut(s)	408, 1165
PkrI	GCNGC	1 cut(s)	1344
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
PscI	ACATGT	1 cut(s)	600
PshAI	GACNNNNGTC	1 cut(s)	910
Psp1406I	AACGTT	1 cut(s)	857
Psp6I	CCWGG	8 cut(s)	408, 468, 742, 934, 1003, 1098, 1165, 1177
PspEI	GGTNACC	1 cut(s)	995
PspGI	CCWGG	8 cut(s)	408, 468, 742, 934, 1003, 1098, 1165, 1177
PspN4I	GGNNCC	4 cut(s)	6, 748, 1117, 1171
PspPI	GGNCC	2 cut(s)	4, 1159
PstNI	CAGNNNCTG	3 cut(s)	91, 395, 1355
PsuI	RGATCY	3 cut(s)	1009, 1039, 1358
RsaI	GTAC	2 cut(s)	605, 748
RsaNI	GTAC	2 cut(s)	604, 747
SalI	GTCGAC	1 cut(s)	1225
SaqAI	TTAA	5 cut(s)	216, 555, 597, 812, 959
SatI	GCNGC	1 cut(s)	1343
Sau96I	GGNCC	2 cut(s)	4, 1159
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	8 cut(s)	410, 470, 744, 936, 1005, 1100, 1167, 1179
SexAI	ACCWGGT	2 cut(s)	468, 1177
SfaNI	GCATC	3 cut(s)	665, 825, 1275
SfcI	CTRYAG	2 cut(s)	286, 880
SinI	GGWCC	2 cut(s)	4, 1159
SmlI	CTYRAG	4 cut(s)	315, 862, 1025, 1304
SmoI	CTYRAG	4 cut(s)	315, 862, 1025, 1304
Sse9I	AATT	5 cut(s)	223, 432, 1209, 1232, 1310
SsiI	CCGC	2 cut(s)	1051, 1082
SspMI	CTAG	2 cut(s)	501, 891
StyD4I	CCNGG	8 cut(s)	408, 468, 742, 934, 1003, 1098, 1165, 1177
TaaI	ACNGT	1 cut(s)	688
TaiI	ACGT	3 cut(s)	156, 860, 1263
TaqI	TCGA	3 cut(s)	46, 901, 1226
TasI	AATT	5 cut(s)	223, 432, 1209, 1232, 1310
Tru1I	TTAA	5 cut(s)	216, 555, 597, 812, 959
Tru9I	TTAA	5 cut(s)	216, 555, 597, 812, 959
TscAI	CASTG	4 cut(s)	801, 921, 1096, 1144
TseFI	GTSAC	5 cut(s)	455, 688, 922, 995, 1181
TseI	GCWGC	1 cut(s)	1342
Tsp45I	GTSAC	5 cut(s)	455, 688, 922, 995, 1181
TspDTI	ATGAA	7 cut(s)	48, 236, 389, 444, 495, 646, 1061
TspGWI	ACGGA	1 cut(s)	1151
TspRI	CASTG	4 cut(s)	801, 921, 1096, 1144
VpaK11BI	GGWCC	2 cut(s)	4, 1159
XagI	CCTNNNNNAGG	1 cut(s)	796
XapI	RAATTY	3 cut(s)	432, 1232, 1310
XceI	RCATGY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	2 cut(s)	839, 1106
XmiI	GTMKAC	1 cut(s)	1226
XmnI	GAANNNNTTC	2 cut(s)	256, 666
XspI	CTAG	2 cut(s)	501, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.