Rw6G023620

Chaperone protein DNAj

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
46250423 .. 46252538
2116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023620.1

Sequence Viewer

Length: 1257 bp
ATGGCTGGCTCCAATGGCGTCAGGATCGTCCACTGGCTCGCCCGTGGTGCTTACAGGACCTTCAACACTGGGCTTTGCAACAATCATAGGGTTTTAGGAAATCATAATGTTTGTAGTAAGAATTGGTTTCTTGGAGCTGCGCATACTAATTGGACTACAGTGAGGTCGATTCATGGAACTGCATCAGTGGCTGCGAGAGATTACTATGATGCACTTGGTGTGAGCAAGACTGCAAATGCGTCGGAAATAAAGAAAGCCTATTATGGCCTGGCAAAGAAGCTCCATCCAGACACAAATAAAGATGATCCTGATGCCGAAAAGAAGTTTCAAGAAGTTCAAAAGGCTTATGAAGTTTTGAAAGATGAGGAGAAGCGTAGAGAGTATGACGAGTGCGGCCATGATGCATTTGAAGAGAGAGGCAATGGCAACGGCAACGGCTTTCCCGGTGGTTTCGGCAATCCATTTGAAGACTTTTTTGGCCGACAGGGTGGTGGACAGGATGTTAATGTAATTTTGGAGATATCCTTTATGGAAGCTGTTAAGGGATGTGCTAAAACTGTGCAATTTCGAGCTGCAGTTTCCTGTGAAGCTTGTAGTGGAACTGGTGCTCCTCCTGGCACCAAACGTGAATCATGTAAGGGCTGTGGGGGGTTAGGTATGACTTCCATGCAAACCGCCCTTGGTAGGATGCATATGCCTTGTACTCAGTGTAGAGGGACTGGCAAAACTTTCCCGATACTCTGCAACTCTTGCAATGGAAAGCGTGTCTTAAATGGAACGAAGTCAGTCAAGTTAGATATAATGCCAGGAATAGACAACAATGAAACCATGCGGGTGTTCAGTAACGGTGGAGCTGATCCTGATGGAAATCAACCTGGTGATCTTTATGTTACCGTTAAGGTTAGGGAAGACCCAGTTTTCCGGAGACAAGGTGCCAACATTCATGTAGATGCCGTTCTGAGTATCTCTCAGGCAATATTGGGAGGAACCATAAAGGTCCCTACTCTCACTGGAGATGTACTCCTAAAGGTCAGCCCTGCCACACAACCTGGTCAGAAGGTAGTCCTGAAGAAGAAGGGGATCAAGACGAGGAACTCTTATTCATTGGGTGATCAATATGTGCACTTCAATGTCAGCATCCCAACAAATCTGTCTCAAAGACAACGTGAAATAATCCAAGAATTTTCCAAAGAAGCTTCTTCCAAAGAAGAACAGGAGGGGGTACATGATAAGCGTGCTGCTGCAGGAGCATCTTGA

Protein Analysis

418

Amino Acids

45.28

Weight (kDa)

8.95

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 67 - 129 1.3e-26 DnaJ domain
DnaJ_C PF01556 169 - 381 1.3e-40 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 195 - 254 1.2e-09 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 141
AccB1I GGYRCC 2 cut(s) 617, 932
AccIII TCCGGA 1 cut(s) 921
AciI CCGC 3 cut(s) 393, 675, 832
AclWI GGATC 4 cut(s) 32, 299, 851, 1088
AcoI YGGCCR 2 cut(s) 394, 478
AcsI RAATTY 1 cut(s) 1181
AcuI CTGAAG 1 cut(s) 1088
AcyI GRCGYC 1 cut(s) 18
AdeI CACNNNGTG 1 cut(s) 218
AfaI GTAC 3 cut(s) 703, 1020, 1224
AfiI CCNNNNNNNGG 1 cut(s) 684
AgsI TTSAA 7 cut(s) 64, 329, 338, 358, 410, 467, 1129
AjnI CCWGG 5 cut(s) 267, 613, 805, 874, 1048
AjuI GAANNNNNNNTTGG 2 cut(s) 459, 491
AloI GAACNNNNNNTCC 2 cut(s) 592, 624
AluBI AGCT 7 cut(s) 137, 280, 536, 572, 590, 854, 1196
AluI AGCT 7 cut(s) 137, 280, 536, 572, 590, 854, 1196
Alw21I GWGCWC 2 cut(s) 610, 1125
Alw26I GTCTC 2 cut(s) 919, 1158
Alw44I GTGCAC 1 cut(s) 1121
AlwI GGATC 4 cut(s) 32, 299, 851, 1088
AlwNI CAGNNNCTG 1 cut(s) 191
Aor13HI TCCGGA 1 cut(s) 921
AoxI GGCC 3 cut(s) 265, 394, 478
ApaLI GTGCAC 1 cut(s) 1121
ApeKI GCWGC 5 cut(s) 137, 191, 572, 1238, 1241
ApoI RAATTY 1 cut(s) 1181
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 57, 997
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 2 cut(s) 890, 1121
AvaII GGWCC 2 cut(s) 57, 997
BaeGI GKGCMC 1 cut(s) 1125
BanI GGYRCC 2 cut(s) 617, 932
BbsI GAAGAC 2 cut(s) 474, 915
Bbv12I GWGCWC 2 cut(s) 610, 1125
BbvI GCAGC 5 cut(s) 124, 178, 559, 1225, 1228
BccI CCATC 2 cut(s) 291, 857
BceAI ACGGC 3 cut(s) 445, 451, 938
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 5 cut(s) 269, 615, 807, 876, 1050
BclI TGATCA 1 cut(s) 1111
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 2 cut(s) 919, 1158
BfmI CTRYAG 3 cut(s) 156, 573, 1242
BisI GCNGC 6 cut(s) 138, 192, 394, 573, 1239, 1242
BlsI GCNGC 6 cut(s) 139, 193, 395, 574, 1240, 1243
Bme1390I CCNGG 6 cut(s) 269, 444, 615, 807, 876, 1050
Bme18I GGWCC 2 cut(s) 57, 997
BmgT120I GGNCC 2 cut(s) 57, 997
BmiI GGNNCC 5 cut(s) 10, 619, 934, 988, 999
BmrFI CCNGG 6 cut(s) 269, 444, 615, 807, 876, 1050
BmrI ACTGGG 2 cut(s) 78, 908
BmsI GCATC 7 cut(s) 191, 199, 301, 391, 678, 940, 1146
BmuI ACTGGG 2 cut(s) 78, 908
BpiI GAAGAC 2 cut(s) 474, 915
BplI GAGNNNNNCTC 4 cut(s) 952, 984, 1005, 1037
BpmI CTGGAG 1 cut(s) 1032
BpuMI CCSGG 1 cut(s) 444
BsaBI GATNNNNATC 1 cut(s) 867
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 2 cut(s) 43, 679
BsaWI WCCGGW 1 cut(s) 921
BsaXI ACNNNNNCTCC 4 cut(s) 592, 622, 916, 946
Bsc4I CCNNNNNNNGG 1 cut(s) 684
Bse1I ACTGG 6 cut(s) 38, 73, 607, 724, 914, 1015
Bse3DI GCAATG 2 cut(s) 427, 760
Bse8I GATNNNNATC 1 cut(s) 867
BseAI TCCGGA 1 cut(s) 921
BseBI CCWGG 5 cut(s) 269, 615, 807, 876, 1050
BseDI CCNNGG 2 cut(s) 43, 679
BseGI GGATG 5 cut(s) 283, 505, 551, 693, 1137
BseJI GATNNNNATC 1 cut(s) 867
BseLI CCNNNNNNNGG 1 cut(s) 684
BseMI GCAATG 2 cut(s) 427, 760
BseMII CTCAG 3 cut(s) 719, 950, 983
BseNI ACTGG 6 cut(s) 38, 73, 607, 724, 914, 1015
BseRI GAGGAG 2 cut(s) 380, 600
BseSI GKGCMC 1 cut(s) 1125
BseXI GCAGC 5 cut(s) 124, 178, 559, 1225, 1228
BshFI GGCC 3 cut(s) 267, 396, 480
BshNI GGYRCC 2 cut(s) 617, 932
BsiHKAI GWGCWC 2 cut(s) 610, 1125
BsiSI CCGG 2 cut(s) 444, 922
BslFI GGGAC 2 cut(s) 730, 983
BslI CCNNNNNNNGG 1 cut(s) 684
BsmAI GTCTC 2 cut(s) 919, 1158
BsmFI GGGAC 2 cut(s) 730, 983
BsnI GGCC 3 cut(s) 267, 396, 480
Bsp1286I GDGCHC 2 cut(s) 610, 1125
Bsp13I TCCGGA 1 cut(s) 921
Bsp143I GATC 6 cut(s) 24, 304, 856, 880, 1080, 1111
BspACI CCGC 3 cut(s) 393, 675, 832
BspANI GGCC 3 cut(s) 267, 396, 480
BspCNI CTCAG 3 cut(s) 718, 951, 982
BspEI TCCGGA 1 cut(s) 921
BspLI GGNNCC 5 cut(s) 10, 619, 934, 988, 999
BspMAI CTGCAG 2 cut(s) 577, 1246
BspPI GGATC 4 cut(s) 32, 299, 851, 1088
BspT107I GGYRCC 2 cut(s) 617, 932
BsrDI GCAATG 2 cut(s) 427, 760
BsrI ACTGG 6 cut(s) 38, 73, 607, 724, 914, 1015
BssECI CCNNGG 2 cut(s) 43, 679
BssMI GATC 6 cut(s) 24, 304, 856, 880, 1080, 1111
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 679
Bst2UI CCWGG 5 cut(s) 269, 615, 807, 876, 1050
Bst4CI ACNGT 4 cut(s) 160, 559, 848, 895
Bst6I CTCTTC 1 cut(s) 405
BstACI GRCGYC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 750
BstC8I GCNNGC 3 cut(s) 7, 39, 1236
BstDEI CTNAG 3 cut(s) 705, 959, 969
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 5 cut(s) 283, 505, 551, 693, 1137
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 6 cut(s) 27, 307, 859, 883, 1083, 1114
BstMAI GTCTC 2 cut(s) 919, 1158
BstMBI GATC 6 cut(s) 24, 304, 856, 880, 1080, 1111
BstMWI GCNNNNNNNGC 5 cut(s) 15, 47, 188, 750, 1247
BstNI CCWGG 5 cut(s) 269, 615, 807, 876, 1050
BstSCI CCNGG 6 cut(s) 267, 442, 613, 805, 874, 1048
BstSFI CTRYAG 3 cut(s) 156, 573, 1242
BstSLI GKGCMC 1 cut(s) 1125
BstV1I GCAGC 5 cut(s) 124, 178, 559, 1225, 1228
BstV2I GAAGAC 2 cut(s) 474, 915
BsuRI GGCC 3 cut(s) 267, 396, 480
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 5 cut(s) 283, 505, 551, 693, 1137
BtsIMutI CAGTG 6 cut(s) 31, 66, 165, 192, 713, 1008
Cac8I GCNNGC 3 cut(s) 7, 39, 1236
CaiI CAGNNNCTG 1 cut(s) 191
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 57, 997
CseI GACGC 2 cut(s) 7, 228
CsiI ACCWGGT 2 cut(s) 874, 1048
Csp6I GTAC 3 cut(s) 702, 1019, 1223
CviAII CATG 7 cut(s) 173, 398, 633, 667, 829, 944, 1226
CviQI GTAC 3 cut(s) 702, 1019, 1223
DdeI CTNAG 3 cut(s) 705, 959, 969
DpnI GATC 6 cut(s) 26, 306, 858, 882, 1082, 1113
DpnII GATC 6 cut(s) 24, 304, 856, 880, 1080, 1111
DraIII CACNNNGTG 1 cut(s) 218
EaeI YGGCCR 2 cut(s) 394, 478
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 679
Eco32I GATATC 1 cut(s) 522
Eco47I GGWCC 2 cut(s) 57, 997
Eco57I CTGAAG 1 cut(s) 1088
EcoO109I RGGNCCY 2 cut(s) 57, 997
EcoRII CCWGG 5 cut(s) 267, 613, 805, 874, 1048
EcoRV GATATC 1 cut(s) 522
EcoT14I CCWWGG 1 cut(s) 679
EcoT22I ATGCAT 2 cut(s) 406, 693
ErhI CCWWGG 1 cut(s) 679
FaeI CATG 7 cut(s) 176, 401, 636, 670, 832, 947, 1229
FalI AAGNNNNNCTT 2 cut(s) 752, 784
FaqI GGGAC 2 cut(s) 730, 983
FatI CATG 7 cut(s) 172, 397, 632, 666, 828, 943, 1225
FauI CCCGC 1 cut(s) 825
FauNDI CATATG 1 cut(s) 693
FbaI TGATCA 1 cut(s) 1111
Fnu4HI GCNGC 6 cut(s) 138, 192, 394, 573, 1239, 1242
FokI GGATG 5 cut(s) 270, 512, 558, 700, 1124
Fsp4HI GCNGC 6 cut(s) 138, 192, 394, 573, 1239, 1242
FspI TGCGCA 1 cut(s) 141
GlaI GCGC 1 cut(s) 141
GluI GCNGC 6 cut(s) 138, 192, 394, 573, 1239, 1242
GsuI CTGGAG 1 cut(s) 1032
HaeIII GGCC 3 cut(s) 267, 396, 480
HapII CCGG 2 cut(s) 444, 922
HgaI GACGC 2 cut(s) 7, 228
HhaI GCGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 7 cut(s) 176, 401, 636, 670, 832, 947, 1229
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HindIII AAGCTT 2 cut(s) 588, 1194
HinfI GANTC 2 cut(s) 169, 629
HpaII CCGG 2 cut(s) 444, 922
HphI GGTGA 2 cut(s) 890, 1121
Hpy166II GTNNAC 3 cut(s) 31, 494, 1123
Hpy188I TCNGA 3 cut(s) 244, 960, 1056
Hpy8I GTNNAC 3 cut(s) 31, 494, 1123
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 3 cut(s) 70, 1051, 1069
HpyCH4III ACNGT 4 cut(s) 160, 559, 848, 895
HpyCH4IV ACGT 2 cut(s) 625, 1165
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 47, 188, 750, 1247
HpyF3I CTNAG 3 cut(s) 705, 959, 969
HpySE526I ACGT 2 cut(s) 625, 1165
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 7 cut(s) 176, 401, 636, 670, 832, 947, 1229
HspAI GCGC 1 cut(s) 140
Kpn2I TCCGGA 1 cut(s) 921
Ksp22I TGATCA 1 cut(s) 1111
Kzo9I GATC 6 cut(s) 24, 304, 856, 880, 1080, 1111
LmnI GCTCC 6 cut(s) 14, 134, 285, 613, 851, 1247
Lsp1109I GCAGC 5 cut(s) 124, 178, 559, 1225, 1228
LweI GCATC 7 cut(s) 191, 199, 301, 391, 678, 940, 1146
MabI ACCWGGT 2 cut(s) 874, 1048
MaeII ACGT 2 cut(s) 625, 1165
MaeIII GTNAC 2 cut(s) 842, 889
MalI GATC 6 cut(s) 26, 306, 858, 882, 1082, 1113
MboI GATC 6 cut(s) 24, 304, 856, 880, 1080, 1111
MboII GAAGA 7 cut(s) 422, 479, 920, 1081, 1084, 1191, 1220
MhlI GDGCHC 2 cut(s) 610, 1125
MluCI AATT 5 cut(s) 121, 148, 510, 563, 1181
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 8 cut(s) 156, 358, 410, 621, 707, 977, 1083, 1210
Mph1103I ATGCAT 2 cut(s) 406, 693
MroI TCCGGA 1 cut(s) 921
MseI TTAA 4 cut(s) 504, 540, 770, 897
MslI CAYNNNNRTG 3 cut(s) 833, 948, 1128
MspI CCGG 2 cut(s) 444, 922
MspR9I CCNGG 6 cut(s) 269, 444, 615, 807, 876, 1050
MvaI CCWGG 5 cut(s) 269, 615, 807, 876, 1050
MwoI GCNNNNNNNGC 5 cut(s) 15, 47, 188, 750, 1247
NciI CCSGG 1 cut(s) 444
NdeI CATATG 1 cut(s) 693
NdeII GATC 6 cut(s) 24, 304, 856, 880, 1080, 1111
NlaIII CATG 7 cut(s) 176, 401, 636, 670, 832, 947, 1229
NlaIV GGNNCC 5 cut(s) 10, 619, 934, 988, 999
NsbI TGCGCA 1 cut(s) 141
NsiI ATGCAT 2 cut(s) 406, 693
PfeI GAWTC 2 cut(s) 169, 629
PkrI GCNGC 6 cut(s) 139, 193, 395, 574, 1240, 1243
PpuMI RGGWCCY 2 cut(s) 57, 997
Psp5II RGGWCCY 2 cut(s) 57, 997
Psp6I CCWGG 5 cut(s) 267, 613, 805, 874, 1048
PspGI CCWGG 5 cut(s) 267, 613, 805, 874, 1048
PspN4I GGNNCC 5 cut(s) 10, 619, 934, 988, 999
PspPI GGNCC 2 cut(s) 57, 997
PspPPI RGGWCCY 2 cut(s) 57, 997
PsrI GAACNNNNNNTAC 2 cut(s) 939, 971
PstI CTGCAG 2 cut(s) 577, 1246
PstNI CAGNNNCTG 1 cut(s) 191
RsaI GTAC 3 cut(s) 703, 1020, 1224
RsaNI GTAC 3 cut(s) 702, 1019, 1223
RseI CAYNNNNRTG 3 cut(s) 833, 948, 1128
SaqAI TTAA 4 cut(s) 504, 540, 770, 897
SatI GCNGC 6 cut(s) 138, 192, 394, 573, 1239, 1242
Sau3AI GATC 6 cut(s) 24, 304, 856, 880, 1080, 1111
Sau96I GGNCC 2 cut(s) 57, 997
ScrFI CCNGG 6 cut(s) 269, 444, 615, 807, 876, 1050
SduI GDGCHC 2 cut(s) 610, 1125
SexAI ACCWGGT 2 cut(s) 874, 1048
SfaNI GCATC 7 cut(s) 191, 199, 301, 391, 678, 940, 1146
SfcI CTRYAG 3 cut(s) 156, 573, 1242
SinI GGWCC 2 cut(s) 57, 997
SmiMI CAYNNNNRTG 3 cut(s) 833, 948, 1128
Sse9I AATT 5 cut(s) 121, 148, 510, 563, 1181
SsiI CCGC 3 cut(s) 393, 675, 832
SspI AATATT 1 cut(s) 978
StyD4I CCNGG 6 cut(s) 267, 442, 613, 805, 874, 1048
StyI CCWWGG 1 cut(s) 679
TaaI ACNGT 4 cut(s) 160, 559, 848, 895
TaiI ACGT 2 cut(s) 628, 1168
TaqI TCGA 2 cut(s) 167, 568
TasI AATT 5 cut(s) 121, 148, 510, 563, 1181
TatI WGTACW 2 cut(s) 701, 1018
TauI GCSGC 1 cut(s) 396
TfiI GAWTC 2 cut(s) 169, 629
Tru1I TTAA 4 cut(s) 504, 540, 770, 897
Tru9I TTAA 4 cut(s) 504, 540, 770, 897
TscAI CASTG 6 cut(s) 38, 73, 165, 192, 713, 1015
TseI GCWGC 5 cut(s) 137, 191, 572, 1238, 1241
TspDTI ATGAA 5 cut(s) 161, 363, 837, 932, 1092
TspRI CASTG 6 cut(s) 38, 73, 165, 192, 713, 1015
VneI GTGCAC 1 cut(s) 1121
VpaK11BI GGWCC 2 cut(s) 57, 997
XapI RAATTY 1 cut(s) 1181
Zsp2I ATGCAT 2 cut(s) 406, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.