Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004458

Physical Location & Seq

Genomic Coordinates Reverse (-)

437050 .. 438495

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0001800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCCGCGTTGGGGTTTGAGAACTACAACTCAGCCGTGAGATCAGAGAGGTCAGTAGTTGTAGTTGTACTGGTGTTAATGTTAACAACCACAACAACAACAACAGTTAAAGTCGTCGACGGAGGAGCGGTCGACGAATGTGCGCAGCAGCTAGCAGGGATGGCCACGTGTCTGCCTTACGTTGGGGGTGAAGCCATGGCTCCAACACCGGACTGTTGCAGTGGTCTGAAACAAGTCCTGAACAAAAATAAAACGTGCCTCTGCGTTATCATTCAAGATCGCAACGACCCTGATTTGGGCCTGCAGATCAATGTCACTCTTGCTTTGGGCCTGCCTTCCGTCTGCCACGCCGCCGCCAATATCTCTAAGTGTCCCGATCGATGCATATGCAGAACTTCTACACTTGGATCCCAAATCACCAGAAGCTCAAGTGTTCTATCAGTTACAGAACAACTCTACGCAAACCGCTGCTCCGACTCCAAGCAGTACAGCAGCAGCTGGAGGTCCCGTGAGTGGCATAAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000740 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006458 GO:0006996 GO:0006997 GO:0007275 GO:0007349 GO:0008150 GO:0008219 GO:0009553 GO:0009558 GO:0009559 GO:0009561 GO:0009653 GO:0009856 GO:0009987 GO:0010197 GO:0010198 GO:0010623 GO:0012501 GO:0016043 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048229 GO:0048284 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051084 GO:0051085 GO:0051704 GO:0061024 GO:0061025 GO:0061077 GO:0071840 GO:0090174

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

175

Amino Acids

18.83

Weight (kDa)

8.0

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	38 - 124	4.9e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	47 - 120	2.7e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48030
fragaria_vesca	FvH4_2g18630 FvH4_2g18630 FvH4_7g00600 FvH4_7g00600 FvH4_7g00600
malus_domestica	MD02G1316500.v1.1
prunus_persica	Prupe.2G007700_v2.0.a1
pyrus_communis	pycom02g26520
rosa_chinensis	RchiOBHm_Chr1g0314781 RchiOBHm_Chr6g0284191
rosa_laevigata	RLG00000012758 RLG00000030764
rosa_multiflora	Rmu_sc0002833.1_g000038 Rmu_sc0003778.1_g000002
rosa_roxburghii	Rroxscaffold_4G00331880 Rroxscaffold_7G00184800
rosa_rugosa	Rorug01G0001800 Rorug01G0001800 Rorug06G0161800
rosa_samantha	Rh1AG012700 Rh1BG004300 Rh1CG011200 Rh1DG006000 Rh6AG274600 Rh6BG275100 Rh6CG064000 Rh6CG276800 Rh6DG061100 Rh6DG269400
rosa_wichuraiana	Rw1G000530 Rw6G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	144
AccBSI	CCGCTC	1 cut(s)	128
AccI	GTMKAC	2 cut(s)	117, 132
AccII	CGCG	1 cut(s)	8
AciI	CCGC	5 cut(s)	6, 128, 351, 354, 466
AclWI	GGATC	2 cut(s)	402, 415
AcoI	YGGCCR	2 cut(s)	3, 162
AcvI	CACGTG	1 cut(s)	168
AfaI	GTAC	2 cut(s)	69, 488
AfiI	CCNNNNNNNGG	5 cut(s)	12, 182, 295, 296, 513
AflIII	ACRYGT	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	275
AluBI	AGCT	3 cut(s)	151, 426, 498
AluI	AGCT	3 cut(s)	151, 426, 498
AlwI	GGATC	2 cut(s)	402, 415
AlwNI	CAGNNNCTG	1 cut(s)	498
AoxI	GGCC	4 cut(s)	3, 162, 298, 328
ApeKI	GCWGC	5 cut(s)	145, 148, 468, 492, 495
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	3 cut(s)	298, 328, 504
AsuHPI	GGTGA	2 cut(s)	200, 409
AsuNHI	GCTAGC	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	504
BalI	TGGCCA	1 cut(s)	164
BamHI	GGATCC	1 cut(s)	407
BbrPI	CACGTG	1 cut(s)	168
BbvI	GCAGC	5 cut(s)	157, 160, 455, 504, 507
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	20
BcgI	CGANNNNNNTGC	4 cut(s)	122, 156, 369, 403
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	302
BisI	GCNGC	8 cut(s)	6, 146, 149, 351, 354, 469, 493, 496
BlsI	GCNGC	8 cut(s)	7, 147, 150, 352, 355, 470, 494, 497
Bme18I	GGWCC	1 cut(s)	504
BmgT120I	GGNCC	3 cut(s)	298, 328, 504
BmiI	GGNNCC	3 cut(s)	201, 409, 506
BmsI	GCATC	1 cut(s)	371
BmtI	GCTAGC	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	520
BpuEI	CTTGAG	1 cut(s)	412
Bsa29I	ATCGAT	1 cut(s)	379
BsaAI	YACGTR	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	6 cut(s)	114, 144, 455, 485, 493, 523
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 182, 295, 296, 513
Bse1I	ACTGG	1 cut(s)	75
BseCI	ATCGAT	1 cut(s)	379
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	5 cut(s)	12, 182, 295, 296, 513
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	5 cut(s)	157, 160, 455, 504, 507
Bsh1236I	CGCG	1 cut(s)	8
Bsh1285I	CGRYCG	2 cut(s)	132, 379
BshFI	GGCC	4 cut(s)	5, 164, 300, 330
BshVI	ATCGAT	1 cut(s)	379
BsiEI	CGRYCG	2 cut(s)	132, 379
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	2 cut(s)	357, 490
BslI	CCNNNNNNNGG	5 cut(s)	12, 182, 295, 296, 513
BsmFI	GGGAC	2 cut(s)	357, 490
BsnI	GGCC	4 cut(s)	5, 164, 300, 330
Bsp143I	GATC	5 cut(s)	41, 277, 306, 376, 407
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	5 cut(s)	6, 128, 351, 354, 466
BspANI	GGCC	4 cut(s)	5, 164, 300, 330
BspCNI	CTCAG	1 cut(s)	44
BspDI	ATCGAT	1 cut(s)	379
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	3 cut(s)	201, 409, 506
BspMAI	CTGCAG	1 cut(s)	306
BspOI	GCTAGC	1 cut(s)	155
BspPI	GGATC	2 cut(s)	402, 415
BsrBI	CCGCTC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	5 cut(s)	41, 277, 306, 376, 407
BssT1I	CCWWGG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	106, 215
BstBAI	YACGTR	1 cut(s)	168
BstC8I	GCNNGC	3 cut(s)	153, 302, 332
BstDEI	CTNAG	2 cut(s)	31, 366
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	5 cut(s)	44, 280, 309, 379, 410
BstMBI	GATC	5 cut(s)	41, 277, 306, 376, 407
BstMCI	CGRYCG	2 cut(s)	132, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	302
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	5 cut(s)	157, 160, 455, 504, 507
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
Bsu15I	ATCGAT	1 cut(s)	379
BsuRI	GGCC	4 cut(s)	5, 164, 300, 330
BsuTUI	ATCGAT	1 cut(s)	379
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	3 cut(s)	153, 302, 332
CaiI	CAGNNNCTG	1 cut(s)	498
CfoI	GCGC	1 cut(s)	145
Cfr13I	GGNCC	3 cut(s)	298, 328, 504
ClaI	ATCGAT	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	68, 487
CviAII	CATG	1 cut(s)	196
CviQI	GTAC	2 cut(s)	68, 487
DdeI	CTNAG	2 cut(s)	31, 366
DpnI	GATC	5 cut(s)	43, 279, 308, 378, 409
DpnII	GATC	5 cut(s)	41, 277, 306, 376, 407
EaeI	YGGCCR	2 cut(s)	3, 162
Eco130I	CCWWGG	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	504
Eco72I	CACGTG	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	504
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	1 cut(s)	199
FaiI	YATR	4 cut(s)	197, 386, 388, 519
FaqI	GGGAC	2 cut(s)	357, 490
FatI	CATG	1 cut(s)	195
FauNDI	CATATG	1 cut(s)	386
FblI	GTMKAC	2 cut(s)	117, 132
Fnu4HI	GCNGC	8 cut(s)	6, 146, 149, 351, 354, 469, 493, 496
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	8 cut(s)	6, 146, 149, 351, 354, 469, 493, 496
FspBI	CTAG	1 cut(s)	152
FspI	TGCGCA	1 cut(s)	144
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	8 cut(s)	6, 146, 149, 351, 354, 469, 493, 496
GsuI	CTGGAG	1 cut(s)	520
HaeIII	GGCC	4 cut(s)	5, 164, 300, 330
HapII	CCGG	1 cut(s)	209
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HincII	GTYRAC	3 cut(s)	84, 118, 133
HindII	GTYRAC	3 cut(s)	84, 118, 133
HinfI	GANTC	1 cut(s)	476
HpaI	GTTAAC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	2 cut(s)	200, 409
Hpy166II	GTNNAC	3 cut(s)	84, 118, 133
Hpy188I	TCNGA	3 cut(s)	46, 228, 475
Hpy188III	TCNNGA	3 cut(s)	238, 275, 374
Hpy8I	GTNNAC	3 cut(s)	84, 118, 133
Hpy99I	CGWCG	3 cut(s)	119, 122, 137
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	2 cut(s)	106, 215
HpyCH4IV	ACGT	3 cut(s)	167, 180, 254
HpyCH4V	TGCA	4 cut(s)	219, 304, 384, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	31, 366
HpySE526I	ACGT	3 cut(s)	167, 180, 254
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	1 cut(s)	143
KspAI	GTTAAC	1 cut(s)	84
Kzo9I	GATC	5 cut(s)	41, 277, 306, 376, 407
LmnI	GCTCC	3 cut(s)	125, 205, 476
LpnPI	CCDG	9 cut(s)	56, 141, 222, 251, 303, 314, 344, 433, 484
Lsp1109I	GCAGC	5 cut(s)	157, 160, 455, 504, 507
LweI	GCATC	1 cut(s)	371
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	3 cut(s)	167, 180, 254
MaeIII	GTNAC	2 cut(s)	313, 442
MalI	GATC	5 cut(s)	43, 279, 308, 378, 409
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	5 cut(s)	41, 277, 306, 376, 407
MflI	RGATCY	1 cut(s)	407
MlsI	TGGCCA	1 cut(s)	164
MluNI	TGGCCA	1 cut(s)	164
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	2 cut(s)	227, 498
MnlI	CCTC	4 cut(s)	42, 116, 269, 495
Mox20I	TGGCCA	1 cut(s)	164
Mph1103I	ATGCAT	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	164
MseI	TTAA	3 cut(s)	77, 83, 108
Msp20I	TGGCCA	1 cut(s)	164
MspA1I	CMGCKG	2 cut(s)	468, 498
MspI	CCGG	1 cut(s)	209
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	195
NdeI	CATATG	1 cut(s)	386
NdeII	GATC	5 cut(s)	41, 277, 306, 376, 407
NheI	GCTAGC	1 cut(s)	151
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	3 cut(s)	201, 409, 506
NmuCI	GTSAC	1 cut(s)	313
NsbI	TGCGCA	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	386
PkrI	GCNGC	8 cut(s)	7, 147, 150, 352, 355, 470, 494, 497
Ple19I	CGATCG	1 cut(s)	379
PleI	GAGTC	1 cut(s)	470
PmaCI	CACGTG	1 cut(s)	168
PmlI	CACGTG	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	470
Ppu21I	YACGTR	1 cut(s)	168
PpuMI	RGGWCCY	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	504
PspCI	CACGTG	1 cut(s)	168
PspN4I	GGNNCC	3 cut(s)	201, 409, 506
PspPI	GGNCC	3 cut(s)	298, 328, 504
PspPPI	RGGWCCY	1 cut(s)	504
PstI	CTGCAG	1 cut(s)	306
PstNI	CAGNNNCTG	1 cut(s)	498
PsuI	RGATCY	1 cut(s)	407
PvuI	CGATCG	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	498
RsaI	GTAC	2 cut(s)	69, 488
RsaNI	GTAC	2 cut(s)	68, 487
SalI	GTCGAC	2 cut(s)	116, 131
SaqAI	TTAA	3 cut(s)	77, 83, 108
SatI	GCNGC	8 cut(s)	6, 146, 149, 351, 354, 469, 493, 496
Sau3AI	GATC	5 cut(s)	41, 277, 306, 376, 407
Sau96I	GGNCC	3 cut(s)	298, 328, 504
SchI	GAGTC	1 cut(s)	470
SetI	ASST	8 cut(s)	53, 153, 170, 183, 257, 428, 500, 506
SfaNI	GCATC	1 cut(s)	371
SfcI	CTRYAG	1 cut(s)	302
SgrDI	CGTCGACG	1 cut(s)	116
SinI	GGWCC	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
SsiI	CCGC	5 cut(s)	6, 128, 351, 354, 466
SspMI	CTAG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	106, 215
TaiI	ACGT	3 cut(s)	170, 183, 257
TaqI	TCGA	3 cut(s)	117, 132, 379
TatI	WGTACW	2 cut(s)	67, 486
TauI	GCSGC	3 cut(s)	8, 353, 356
Tru1I	TTAA	3 cut(s)	77, 83, 108
Tru9I	TTAA	3 cut(s)	77, 83, 108
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	5 cut(s)	145, 148, 468, 492, 495
Tsp45I	GTSAC	1 cut(s)	313
TspGWI	ACGGA	2 cut(s)	135, 328
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	504
XmiI	GTMKAC	2 cut(s)	117, 132
XspI	CTAG	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.