Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004458

Physical Location & Seq

Genomic Coordinates Forward (+)

45299812 .. 45305168

Gene Structure 5357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG276800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCTGGCTCCAATGGCGTCAGGATCGTCCACTGGCTCGCCCGTCGCTCTCTCTCCTCCAAAACCCTCCTAAACCCTACACCCTCCTCCTCCATTTACAGTAGGCTCCTTGGAGGTGGGGCTTACAGGACCTTCAACACTGGGCTTTGCAACAATCATAGGGTTTTAGGAAATCATAATGTTTGTAGTAAGAATTGGTTTCTTGGAGCTGCGCATACTAATTCGACTACAGTGAGGTCGATTCATGGAACTGCATCAGTTGCTGCGAGAGATTACTATGATGCACTTGGTGTGAGCAAGACTGCAAATGCGTCGGAAATAAAGAAAGCCTATTATGGCCTGGCAAAGAAGCTCCATCCAGACACAAATAAAGATGATCCTGATGCCGAAAAGAAGTTTCAAGAAGTTCAAAAGGCTTATGAAGTTTTGAAAGATGAGGAGAAGCGTAAAGAGTATGACGAGTACGGCCATGATGCATTTGAAGAGAGAGGCAACGGCAACGGCAACGGCTTTCCCGGTGGTTTCGGCAGTCCATTTGAAGACTTTTTTGGCCGACAGGGTGGTGGACAGGATGTTAATGTAATTTTGGAGATATCCTTTATGGAAGCTGTTAAGGGATGTGCTAAAACTGTGCAATTTCGAGCTGCAGTTTCCTGTGAAGCTTGTAGTGGAACTGGTGCTCCTCCTGGCACCAAACGTGAATCATGTAAGGGCTGTGGGGGGTTAGGTATGACTTCCATGCAAACCGCCCTTGGTAGGATGCATATGCCTTGTACTCAGTGTAGAGGGACTGGCAAAACTTTCCCGATACTCTGCAACTCTTGCAATGGAAAGCGTGTCTTAAATGGAACGAAGTCAGTCAAGTTAGATATAATGCCAGGAATAGACAACAATGAAACCATGCGGGTGTTCAGTAACGGTGGAGCTGATCCTGATGGAAATCAACCTGGTGATCTTTATGTTACCATTAAGGTTAGGGAAGACCCAGTTTTCCGGAGACAAGGTGCCAACATTCATGTAGATGCCGTTCTGAGTATCTCTCAGGTAATGCTTAAGTACTTCACTGCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000740 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006458 GO:0006996 GO:0006997 GO:0007275 GO:0007349 GO:0008150 GO:0008219 GO:0009553 GO:0009558 GO:0009559 GO:0009561 GO:0009653 GO:0009856 GO:0009987 GO:0010197 GO:0010198 GO:0010623 GO:0012501 GO:0016043 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048229 GO:0048284 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051084 GO:0051085 GO:0051704 GO:0061024 GO:0061025 GO:0061077 GO:0071840 GO:0090174

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

357

Amino Acids

38.65

Weight (kDa)

8.95

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	91 - 153	1.4e-26	DnaJ domain
DnaJ_C	PF01556	193 - 351	4.3e-19	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	219 - 278	9.2e-10	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48030
fragaria_vesca	FvH4_2g18630 FvH4_2g18630 FvH4_7g00600 FvH4_7g00600 FvH4_7g00600
malus_domestica	MD02G1316500.v1.1
prunus_persica	Prupe.2G007700_v2.0.a1
pyrus_communis	pycom02g26520
rosa_chinensis	RchiOBHm_Chr1g0314781 RchiOBHm_Chr6g0284191
rosa_laevigata	RLG00000012758 RLG00000030764
rosa_multiflora	Rmu_sc0002833.1_g000038 Rmu_sc0003778.1_g000002
rosa_roxburghii	Rroxscaffold_4G00331880 Rroxscaffold_7G00184800
rosa_rugosa	Rorug01G0001800 Rorug01G0001800 Rorug06G0161800
rosa_samantha	Rh1AG012700 Rh1BG004300 Rh1CG011200 Rh1DG006000 Rh6AG274600 Rh6BG275100 Rh6CG064000 Rh6CG276800 Rh6DG061100 Rh6DG269400
rosa_wichuraiana	Rw1G000530 Rw6G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	213
AccB1I	GGYRCC	2 cut(s)	689, 1004
AccIII	TCCGGA	1 cut(s)	993
AciI	CCGC	2 cut(s)	747, 904
AclWI	GGATC	3 cut(s)	32, 371, 923
AcoI	YGGCCR	2 cut(s)	466, 550
AcyI	GRCGYC	1 cut(s)	18
AdeI	CACNNNGTG	1 cut(s)	290
AfaI	GTAC	3 cut(s)	464, 775, 1058
AfiI	CCNNNNNNNGG	1 cut(s)	756
AflII	CTTAAG	1 cut(s)	1052
AgsI	TTSAA	6 cut(s)	136, 401, 410, 430, 482, 539
AjnI	CCWGG	4 cut(s)	339, 685, 877, 946
AjuI	GAANNNNNNNTTGG	2 cut(s)	531, 563
AloI	GAACNNNNNNTCC	2 cut(s)	664, 696
AluBI	AGCT	6 cut(s)	209, 352, 608, 644, 662, 926
AluI	AGCT	6 cut(s)	209, 352, 608, 644, 662, 926
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	1 cut(s)	991
AlwI	GGATC	3 cut(s)	32, 371, 923
AlwNI	CAGNNNCTG	1 cut(s)	263
Aor13HI	TCCGGA	1 cut(s)	993
AoxI	GGCC	3 cut(s)	337, 466, 550
ApeKI	GCWGC	3 cut(s)	209, 263, 644
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	516
AsuHPI	GGTGA	1 cut(s)	962
AvaII	GGWCC	1 cut(s)	129
BanI	GGYRCC	2 cut(s)	689, 1004
BbsI	GAAGAC	2 cut(s)	546, 987
Bbv12I	GWGCWC	1 cut(s)	682
BbvI	GCAGC	3 cut(s)	196, 250, 631
BccI	CCATC	2 cut(s)	363, 929
BceAI	ACGGC	5 cut(s)	481, 511, 517, 523, 1010
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BciT130I	CCWGG	4 cut(s)	341, 687, 879, 948
BcnI	CCSGG	1 cut(s)	516
BcoDI	GTCTC	1 cut(s)	991
BfmI	CTRYAG	2 cut(s)	228, 645
BfrI	CTTAAG	1 cut(s)	1052
BisI	GCNGC	3 cut(s)	210, 264, 645
BlsI	GCNGC	3 cut(s)	211, 265, 646
BmcAI	AGTACT	1 cut(s)	1058
Bme1390I	CCNGG	5 cut(s)	341, 516, 687, 879, 948
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	4 cut(s)	10, 107, 691, 1006
BmrFI	CCNGG	5 cut(s)	341, 516, 687, 879, 948
BmrI	ACTGGG	2 cut(s)	150, 980
BmsI	GCATC	6 cut(s)	263, 271, 373, 463, 750, 1012
BmuI	ACTGGG	2 cut(s)	150, 980
BpiI	GAAGAC	2 cut(s)	546, 987
BplI	GAGNNNNNCTC	2 cut(s)	1024, 1056
BpuMI	CCSGG	1 cut(s)	516
BsaBI	GATNNNNATC	1 cut(s)	939
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	109, 751
BsaWI	WCCGGW	1 cut(s)	993
BsaXI	ACNNNNNCTCC	4 cut(s)	664, 694, 988, 1018
Bsc4I	CCNNNNNNNGG	1 cut(s)	756
Bse1I	ACTGG	5 cut(s)	38, 145, 679, 796, 986
Bse3DI	GCAATG	1 cut(s)	832
Bse8I	GATNNNNATC	1 cut(s)	939
BseAI	TCCGGA	1 cut(s)	993
BseBI	CCWGG	4 cut(s)	341, 687, 879, 948
BseDI	CCNNGG	2 cut(s)	109, 751
BseGI	GGATG	4 cut(s)	355, 577, 623, 765
BseJI	GATNNNNATC	1 cut(s)	939
BseLI	CCNNNNNNNGG	1 cut(s)	756
BseMI	GCAATG	1 cut(s)	832
BseMII	CTCAG	3 cut(s)	791, 1022, 1055
BseNI	ACTGG	5 cut(s)	38, 145, 679, 796, 986
BseRI	GAGGAG	5 cut(s)	46, 76, 79, 452, 672
BseXI	GCAGC	3 cut(s)	196, 250, 631
BshFI	GGCC	3 cut(s)	339, 468, 552
BshNI	GGYRCC	2 cut(s)	689, 1004
BsiHKAI	GWGCWC	1 cut(s)	682
BsiSI	CCGG	2 cut(s)	516, 994
BslFI	GGGAC	1 cut(s)	802
BslI	CCNNNNNNNGG	1 cut(s)	756
BsmAI	GTCTC	1 cut(s)	991
BsmFI	GGGAC	1 cut(s)	802
BsnI	GGCC	3 cut(s)	339, 468, 552
Bsp1286I	GDGCHC	1 cut(s)	682
Bsp13I	TCCGGA	1 cut(s)	993
Bsp143I	GATC	4 cut(s)	24, 376, 928, 952
BspACI	CCGC	2 cut(s)	747, 904
BspANI	GGCC	3 cut(s)	339, 468, 552
BspCNI	CTCAG	3 cut(s)	790, 1023, 1054
BspEI	TCCGGA	1 cut(s)	993
BspLI	GGNNCC	4 cut(s)	10, 107, 691, 1006
BspMAI	CTGCAG	1 cut(s)	649
BspPI	GGATC	3 cut(s)	32, 371, 923
BspT107I	GGYRCC	2 cut(s)	689, 1004
BspTI	CTTAAG	1 cut(s)	1052
BsrDI	GCAATG	1 cut(s)	832
BsrI	ACTGG	5 cut(s)	38, 145, 679, 796, 986
BssECI	CCNNGG	2 cut(s)	109, 751
BssMI	GATC	4 cut(s)	24, 376, 928, 952
BssNI	GRCGYC	1 cut(s)	18
BssT1I	CCWWGG	2 cut(s)	109, 751
Bst2UI	CCWGG	4 cut(s)	341, 687, 879, 948
Bst4CI	ACNGT	4 cut(s)	101, 232, 631, 920
Bst6I	CTCTTC	1 cut(s)	477
BstACI	GRCGYC	1 cut(s)	18
BstAFI	CTTAAG	1 cut(s)	1052
BstAPI	GCANNNNNTGC	2 cut(s)	260, 822
BstC8I	GCNNGC	2 cut(s)	7, 39
BstDEI	CTNAG	4 cut(s)	777, 1031, 1041, 1068
BstF5I	GGATG	4 cut(s)	355, 577, 623, 765
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	4 cut(s)	27, 379, 931, 955
BstMAI	GTCTC	1 cut(s)	991
BstMBI	GATC	4 cut(s)	24, 376, 928, 952
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 260, 822
BstNI	CCWGG	4 cut(s)	341, 687, 879, 948
BstSCI	CCNGG	5 cut(s)	339, 514, 685, 877, 946
BstSFI	CTRYAG	2 cut(s)	228, 645
BstV1I	GCAGC	3 cut(s)	196, 250, 631
BstV2I	GAAGAC	2 cut(s)	546, 987
BsuRI	GGCC	3 cut(s)	339, 468, 552
BtsCI	GGATG	4 cut(s)	355, 577, 623, 765
BtsI	GCAGTG	1 cut(s)	1062
BtsIMutI	CAGTG	5 cut(s)	31, 138, 237, 785, 1062
Cac8I	GCNNGC	2 cut(s)	7, 39
CaiI	CAGNNNCTG	1 cut(s)	263
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	129
CseI	GACGC	2 cut(s)	7, 300
CsiI	ACCWGGT	1 cut(s)	946
Csp6I	GTAC	3 cut(s)	463, 774, 1057
CviAII	CATG	6 cut(s)	245, 470, 705, 739, 901, 1016
CviQI	GTAC	3 cut(s)	463, 774, 1057
DdeI	CTNAG	4 cut(s)	777, 1031, 1041, 1068
DpnI	GATC	4 cut(s)	26, 378, 930, 954
DpnII	GATC	4 cut(s)	24, 376, 928, 952
DraIII	CACNNNGTG	1 cut(s)	290
EaeI	YGGCCR	2 cut(s)	466, 550
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco130I	CCWWGG	2 cut(s)	109, 751
Eco32I	GATATC	1 cut(s)	594
Eco47I	GGWCC	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRII	CCWGG	4 cut(s)	339, 685, 877, 946
EcoRV	GATATC	1 cut(s)	594
EcoT14I	CCWWGG	2 cut(s)	109, 751
EcoT22I	ATGCAT	2 cut(s)	478, 765
ErhI	CCWWGG	2 cut(s)	109, 751
FaeI	CATG	6 cut(s)	248, 473, 708, 742, 904, 1019
FalI	AAGNNNNNCTT	2 cut(s)	824, 856
FaqI	GGGAC	1 cut(s)	802
FatI	CATG	6 cut(s)	244, 469, 704, 738, 900, 1015
FauI	CCCGC	1 cut(s)	897
FauNDI	CATATG	1 cut(s)	765
Fnu4HI	GCNGC	3 cut(s)	210, 264, 645
FokI	GGATG	4 cut(s)	342, 584, 630, 772
Fsp4HI	GCNGC	3 cut(s)	210, 264, 645
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	3 cut(s)	210, 264, 645
HaeIII	GGCC	3 cut(s)	339, 468, 552
HapII	CCGG	2 cut(s)	516, 994
HgaI	GACGC	2 cut(s)	7, 300
HhaI	GCGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	6 cut(s)	248, 473, 708, 742, 904, 1019
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HindIII	AAGCTT	1 cut(s)	660
HinfI	GANTC	2 cut(s)	241, 701
HpaII	CCGG	2 cut(s)	516, 994
HphI	GGTGA	1 cut(s)	962
Hpy166II	GTNNAC	2 cut(s)	31, 566
Hpy188I	TCNGA	2 cut(s)	316, 1032
Hpy188III	TCNNGA	7 cut(s)	22, 359, 380, 401, 805, 932, 994
Hpy8I	GTNNAC	2 cut(s)	31, 566
Hpy99I	CGWCG	2 cut(s)	48, 316
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	4 cut(s)	101, 232, 631, 920
HpyCH4IV	ACGT	1 cut(s)	697
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 260, 822
HpyF3I	CTNAG	4 cut(s)	777, 1031, 1041, 1068
HpySE526I	ACGT	1 cut(s)	697
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	6 cut(s)	248, 473, 708, 742, 904, 1019
HspAI	GCGC	1 cut(s)	212
Kpn2I	TCCGGA	1 cut(s)	993
Kzo9I	GATC	4 cut(s)	24, 376, 928, 952
LmnI	GCTCC	6 cut(s)	14, 111, 206, 357, 685, 923
Lsp1109I	GCAGC	3 cut(s)	196, 250, 631
LweI	GCATC	6 cut(s)	263, 271, 373, 463, 750, 1012
MabI	ACCWGGT	1 cut(s)	946
MaeII	ACGT	1 cut(s)	697
MaeIII	GTNAC	2 cut(s)	914, 961
MalI	GATC	4 cut(s)	26, 378, 930, 954
MboI	GATC	4 cut(s)	24, 376, 928, 952
MboII	GAAGA	3 cut(s)	494, 551, 992
MhlI	GDGCHC	1 cut(s)	682
MluCI	AATT	4 cut(s)	193, 220, 582, 635
MmeI	TCCRAC	1 cut(s)	294
Mph1103I	ATGCAT	2 cut(s)	478, 765
MroI	TCCGGA	1 cut(s)	993
MseI	TTAA	5 cut(s)	576, 612, 842, 969, 1053
MslI	CAYNNNNRTG	2 cut(s)	905, 1020
MspCI	CTTAAG	1 cut(s)	1052
MspI	CCGG	2 cut(s)	516, 994
MspR9I	CCNGG	5 cut(s)	341, 516, 687, 879, 948
MvaI	CCWGG	4 cut(s)	341, 687, 879, 948
MwoI	GCNNNNNNNGC	3 cut(s)	15, 260, 822
NciI	CCSGG	1 cut(s)	516
NdeI	CATATG	1 cut(s)	765
NdeII	GATC	4 cut(s)	24, 376, 928, 952
NlaIII	CATG	6 cut(s)	248, 473, 708, 742, 904, 1019
NlaIV	GGNNCC	4 cut(s)	10, 107, 691, 1006
NsbI	TGCGCA	1 cut(s)	213
NsiI	ATGCAT	2 cut(s)	478, 765
PfeI	GAWTC	2 cut(s)	241, 701
PkrI	GCNGC	3 cut(s)	211, 265, 646
PpuMI	RGGWCCY	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	129
Psp6I	CCWGG	4 cut(s)	339, 685, 877, 946
PspGI	CCWGG	4 cut(s)	339, 685, 877, 946
PspN4I	GGNNCC	4 cut(s)	10, 107, 691, 1006
PspPI	GGNCC	1 cut(s)	129
PspPPI	RGGWCCY	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	1011, 1043
PstI	CTGCAG	1 cut(s)	649
PstNI	CAGNNNCTG	1 cut(s)	263
RsaI	GTAC	3 cut(s)	464, 775, 1058
RsaNI	GTAC	3 cut(s)	463, 774, 1057
RseI	CAYNNNNRTG	2 cut(s)	905, 1020
SaqAI	TTAA	5 cut(s)	576, 612, 842, 969, 1053
SatI	GCNGC	3 cut(s)	210, 264, 645
Sau3AI	GATC	4 cut(s)	24, 376, 928, 952
Sau96I	GGNCC	1 cut(s)	129
ScaI	AGTACT	1 cut(s)	1058
ScrFI	CCNGG	5 cut(s)	341, 516, 687, 879, 948
SduI	GDGCHC	1 cut(s)	682
SexAI	ACCWGGT	1 cut(s)	946
SfaNI	GCATC	6 cut(s)	263, 271, 373, 463, 750, 1012
SfcI	CTRYAG	2 cut(s)	228, 645
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	2 cut(s)	905, 1020
SmlI	CTYRAG	1 cut(s)	1052
SmoI	CTYRAG	1 cut(s)	1052
Sse9I	AATT	4 cut(s)	193, 220, 582, 635
SsiI	CCGC	2 cut(s)	747, 904
StyD4I	CCNGG	5 cut(s)	339, 514, 685, 877, 946
StyI	CCWWGG	2 cut(s)	109, 751
TaaI	ACNGT	4 cut(s)	101, 232, 631, 920
TaiI	ACGT	1 cut(s)	700
TaqI	TCGA	3 cut(s)	224, 239, 640
TasI	AATT	4 cut(s)	193, 220, 582, 635
TatI	WGTACW	2 cut(s)	773, 1056
TfiI	GAWTC	2 cut(s)	241, 701
Tru1I	TTAA	5 cut(s)	576, 612, 842, 969, 1053
Tru9I	TTAA	5 cut(s)	576, 612, 842, 969, 1053
TscAI	CASTG	5 cut(s)	38, 145, 237, 785, 1069
TseI	GCWGC	3 cut(s)	209, 263, 644
TspDTI	ATGAA	4 cut(s)	233, 435, 909, 1004
TspRI	CASTG	5 cut(s)	38, 145, 237, 785, 1069
Vha464I	CTTAAG	1 cut(s)	1052
VpaK11BI	GGWCC	1 cut(s)	129
ZrmI	AGTACT	1 cut(s)	1058
Zsp2I	ATGCAT	2 cut(s)	478, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.