Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004458

Physical Location & Seq

Genomic Coordinates Reverse (-)

6247403 .. 6248226

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG061100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCTGGCTCCAATGGCGTCAGGATCGTCCACTGGCTTGCCCGTCGCTCTCTCTCCTCCAAAACCCTCCTAAACCCTACACCCTCCTCCATATACAGTAGGCTCCTTGGAGGTGGTGCTTATAGAACCTTCAACACTGGGCTTTGCAAGAATCATAGGGTTTTAGGAAATCATAATGTTTGTAGTAAGAATTGGTTTCTTGGAGCTGCGCATACTAATTGGACCGCAGTGAGGTGGATTCATGGAACTGTTTATCATTCATGCCGCAGTGGGAGACAAGCCATAACTGGAGCAGGTTCACTGCACCAATCCAACAATGAAAAGACATTTTGCCATGTTTTTTCTTATAATAGTCCAAACCTTTCACCATCAAATCTCCAAGTCTCCAACGTTATTCAATCCTCTTCACTCTTTTATTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000740 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006458 GO:0006996 GO:0006997 GO:0007275 GO:0007349 GO:0008150 GO:0008219 GO:0009553 GO:0009558 GO:0009559 GO:0009561 GO:0009653 GO:0009856 GO:0009987 GO:0010197 GO:0010198 GO:0010623 GO:0012501 GO:0016043 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048229 GO:0048284 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051084 GO:0051085 GO:0051704 GO:0061024 GO:0061025 GO:0061077 GO:0071840 GO:0090174

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

141

Amino Acids

15.51

Weight (kDa)

10.5

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48030
fragaria_vesca	FvH4_2g18630 FvH4_2g18630 FvH4_7g00600 FvH4_7g00600 FvH4_7g00600
malus_domestica	MD02G1316500.v1.1
prunus_persica	Prupe.2G007700_v2.0.a1
pyrus_communis	pycom02g26520
rosa_chinensis	RchiOBHm_Chr1g0314781 RchiOBHm_Chr6g0284191
rosa_laevigata	RLG00000012758 RLG00000030764
rosa_multiflora	Rmu_sc0002833.1_g000038 Rmu_sc0003778.1_g000002
rosa_roxburghii	Rroxscaffold_4G00331880 Rroxscaffold_7G00184800
rosa_rugosa	Rorug01G0001800 Rorug01G0001800 Rorug06G0161800
rosa_samantha	Rh1AG012700 Rh1BG004300 Rh1CG011200 Rh1DG006000 Rh6AG274600 Rh6BG275100 Rh6CG064000 Rh6CG276800 Rh6DG061100 Rh6DG269400
rosa_wichuraiana	Rw1G000530 Rw6G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
Acc16I	TGCGCA	1 cut(s)	210
Acc36I	ACCTGC	1 cut(s)	284
AciI	CCGC	2 cut(s)	225, 265
AclI	AACGTT	1 cut(s)	390
AclWI	GGATC	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	2 cut(s)	133, 398
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
Alw26I	GTCTC	2 cut(s)	268, 388
AlwI	GGATC	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	1 cut(s)	376
BcoDI	GTCTC	2 cut(s)	268, 388
BfuAI	ACCTGC	1 cut(s)	284
BisI	GCNGC	2 cut(s)	207, 265
BlsI	GCNGC	2 cut(s)	208, 266
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	2 cut(s)	10, 104
BmrI	ACTGGG	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	3 cut(s)	38, 142, 292
BseDI	CCNNGG	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseNI	ACTGG	3 cut(s)	38, 142, 292
BseRI	GAGGAG	2 cut(s)	46, 76
BseXI	GCAGC	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	2 cut(s)	268, 388
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	2 cut(s)	225, 265
BspLI	GGNNCC	2 cut(s)	10, 104
BspMI	ACCTGC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	32
BsrI	ACTGG	3 cut(s)	38, 142, 292
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	24
BssNI	GRCGYC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	106
Bst4CI	ACNGT	2 cut(s)	98, 250
Bst6I	CTCTTC	1 cut(s)	409
BstACI	GRCGYC	1 cut(s)	18
BstC8I	GCNNGC	2 cut(s)	7, 39
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	2 cut(s)	268, 388
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	193
BtsI	GCAGTG	3 cut(s)	234, 274, 299
BtsIMutI	CAGTG	5 cut(s)	31, 135, 234, 274, 299
BveI	ACCTGC	1 cut(s)	284
Cac8I	GCNNGC	2 cut(s)	7, 39
CfoI	GCGC	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	222
CseI	GACGC	1 cut(s)	7
CviAII	CATG	3 cut(s)	242, 261, 335
CviJI	RGCY	7 cut(s)	5, 9, 37, 103, 142, 206, 281
CviKI_1	RGCY	7 cut(s)	5, 9, 37, 103, 142, 206, 281
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	409
EarI	CTCTTC	1 cut(s)	409
Eco130I	CCWWGG	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	3 cut(s)	245, 264, 338
FatI	CATG	3 cut(s)	241, 260, 334
Fnu4HI	GCNGC	2 cut(s)	207, 265
Fsp4HI	GCNGC	2 cut(s)	207, 265
FspI	TGCGCA	1 cut(s)	210
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	2 cut(s)	207, 265
GsuI	CTGGAG	1 cut(s)	309
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	211
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	3 cut(s)	245, 264, 338
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HinfI	GANTC	2 cut(s)	151, 238
HphI	GGTGA	1 cut(s)	357
Hpy166II	GTNNAC	2 cut(s)	31, 299
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	2 cut(s)	31, 299
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	98, 250
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	2 cut(s)	147, 304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	390
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	245, 264, 338
HspAI	GCGC	1 cut(s)	209
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	4 cut(s)	14, 108, 203, 290
LpnPI	CCDG	5 cut(s)	7, 19, 123, 273, 279
Lsp1109I	GCAGC	1 cut(s)	193
MaeII	ACGT	1 cut(s)	390
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	2 cut(s)	396, 411
MluCI	AATT	2 cut(s)	190, 217
MmeI	TCCRAC	2 cut(s)	336, 411
MnlI	CCTC	7 cut(s)	67, 77, 94, 97, 104, 225, 412
MseI	TTAA	1 cut(s)	424
MwoI	GCNNNNNNNGC	1 cut(s)	15
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	3 cut(s)	245, 264, 338
NlaIV	GGNNCC	2 cut(s)	10, 104
NsbI	TGCGCA	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	151, 238
PkrI	GCNGC	2 cut(s)	208, 266
PsiI	TTATAA	1 cut(s)	348
Psp1406I	AACGTT	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	10, 104
PspPI	GGNCC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	2 cut(s)	207, 265
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	1 cut(s)	222
SetI	ASST	7 cut(s)	115, 131, 208, 236, 298, 363, 393
SinI	GGWCC	1 cut(s)	222
Sse9I	AATT	2 cut(s)	190, 217
SsiI	CCGC	2 cut(s)	225, 265
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	98, 250
TaiI	ACGT	1 cut(s)	393
TasI	AATT	2 cut(s)	190, 217
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	151, 238
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TscAI	CASTG	5 cut(s)	38, 142, 234, 274, 306
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	3 cut(s)	230, 249, 333
TspRI	CASTG	5 cut(s)	38, 142, 234, 274, 306
VpaK11BI	GGWCC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.