Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004458

Physical Location & Seq

Genomic Coordinates Forward (+)

950796 .. 957963

Gene Structure 7168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG006000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGGTGGCTCCAATGGCGTCAGGCTCTTTTACTCTCTCGCTCGCCGCTCCACACCCTCCGTATACGCCAGAGTGCTTGGAGGAGGTGGTTATAGGACATTTAACACTGGGATTTGCAACAATCCCAGGGTTTTAGGAAATCCTTCTTCTACTACTACTACTATTACCAGTAATGTTTACAGAAGGTTTGGGGGAGCTTTGAGTACCAATTGGACTACAGTGAGATCAATTCATGGAACTGCATCTATGGCTGCGAGAGATTACTATGAGACACTTGGGGTTAGCAGGAACGCAAGTGCATCAGAAATAAAGAAAGCTTATTATGGGCTAGCAAAGAAGCTCCATCCAGACACAAACAAAGAAGATCCCGATGCAGAAAGGAAGTTTCAAGAAGTTTCAAAGGCGTACGAGGTATTGAAAGATGAGGAGAAGCGTCAACAATATGATGAGGTTGGCCATGCTGCATTTGAAGAACAAGGCTCGGGCTTTCCCAATGATTTCAGGAATCCGTTTAAAGATATATTTGATGATAATATCTTCAACATGTTCCGTCAGAATTTTGGTGGTCAAGATATCAAGGTTGCTTTGGAACTATCCTTCATGGAAGCTGTTCAGGGATGTGCCAAAACTGTGACATTTCAGGCTGCAGTGCCCTGTGAAGCATGCGGTGGAAGTGGTGTTCCTCCTGGCACCAGACCAGAATCATGTAAGCGCTGTAAAGGGTCTGGCATGACTTTCATGCAAACTGGTCCATTTAGGATGCAGACAACATGTTCTCAATGTGGTGGGACTGGTAAAAATTACACGAGACTTTGCGACTCATGTAATGGAAAACGGGTCAAATTTGGAATGAAGTCAGTCAAGTTAGATATCATGCCAGGAGTAGACAATAATGAAACTATACGGGTATTTGGTAGCGGTGGAGCTGATCCCGATGGAAATCAGCCTGGTGATCTTTATGTTACCATTAAGGTTAGGGAAGACCCAGTTTTCCGTAGGGATGGTGCCGATATTCATGTAGATGCTGTCCTGAGTATCACTCAGGCAATTTTGGGAGGAACTATCCAGGTCCCAACTCTTACAGGGGATGTTGTACTAAAGGTCCGTGCAGGTACGCAACCTGGACAGAAGGTAGTCTTAAAGAAGAAAGGTAAAGGAATCAGACTAAAGCCTTCTTCTTATTGTTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000740 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006458 GO:0006996 GO:0006997 GO:0007275 GO:0007349 GO:0008150 GO:0008219 GO:0009553 GO:0009558 GO:0009559 GO:0009561 GO:0009653 GO:0009856 GO:0009987 GO:0010197 GO:0010198 GO:0010623 GO:0012501 GO:0016043 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048229 GO:0048284 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051084 GO:0051085 GO:0051704 GO:0061024 GO:0061025 GO:0061077 GO:0071840 GO:0090174

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

397

Amino Acids

43.18

Weight (kDa)

9.24

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	87 - 149	2e-27	DnaJ domain
DnaJ_C	PF01556	192 - 384	6.7e-36	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	219 - 278	8.5e-12	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48030
fragaria_vesca	FvH4_2g18630 FvH4_2g18630 FvH4_7g00600 FvH4_7g00600 FvH4_7g00600
malus_domestica	MD02G1316500.v1.1
prunus_persica	Prupe.2G007700_v2.0.a1
pyrus_communis	pycom02g26520
rosa_chinensis	RchiOBHm_Chr1g0314781 RchiOBHm_Chr6g0284191
rosa_laevigata	RLG00000012758 RLG00000030764
rosa_multiflora	Rmu_sc0002833.1_g000038 Rmu_sc0003778.1_g000002
rosa_roxburghii	Rroxscaffold_4G00331880 Rroxscaffold_7G00184800
rosa_rugosa	Rorug01G0001800 Rorug01G0001800 Rorug06G0161800
rosa_samantha	Rh1AG012700 Rh1BG004300 Rh1CG011200 Rh1DG006000 Rh6AG274600 Rh6BG275100 Rh6CG064000 Rh6CG276800 Rh6DG061100 Rh6DG269400
rosa_wichuraiana	Rw1G000530 Rw6G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1100
AccB1I	GGYRCC	2 cut(s)	689, 1004
AccBSI	CCGCTC	1 cut(s)	48
AccI	GTMKAC	2 cut(s)	63, 885
AciI	CCGC	3 cut(s)	46, 666, 918
AclWI	GGATC	2 cut(s)	359, 923
AcoI	YGGCCR	1 cut(s)	454
AcsI	RAATTY	2 cut(s)	556, 842
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	4 cut(s)	205, 407, 1095, 1114
AfeI	AGCGCT	1 cut(s)	713
AflIII	ACRYGT	2 cut(s)	543, 770
AgsI	TTSAA	5 cut(s)	389, 399, 418, 470, 541
AjnI	CCWGG	6 cut(s)	125, 685, 877, 946, 1065, 1120
AloI	GAACNNNNNNTCC	2 cut(s)	663, 695
AluBI	AGCT	5 cut(s)	197, 317, 340, 608, 926
AluI	AGCT	5 cut(s)	197, 317, 340, 608, 926
Alw26I	GTCTC	2 cut(s)	263, 802
AlwI	GGATC	2 cut(s)	359, 923
Ama87I	CYCGRG	1 cut(s)	481
Aor51HI	AGCGCT	1 cut(s)	713
AoxI	GGCC	1 cut(s)	454
ApeKI	GCWGC	3 cut(s)	251, 461, 644
ApoI	RAATTY	2 cut(s)	556, 842
Asp700I	GAANNNNTTC	2 cut(s)	142, 609
AspLEI	GCGC	1 cut(s)	714
AspS9I	GGNCC	3 cut(s)	749, 1069, 1102
AsuHPI	GGTGA	1 cut(s)	962
AsuNHI	GCTAGC	1 cut(s)	328
AvaI	CYCGRG	1 cut(s)	481
AvaII	GGWCC	3 cut(s)	749, 1069, 1102
BaeGI	GKGCMC	1 cut(s)	654
BalI	TGGCCA	1 cut(s)	456
BanI	GGYRCC	2 cut(s)	689, 1004
BauI	CACGAG	1 cut(s)	805
BbsI	GAAGAC	1 cut(s)	987
BbvI	GCAGC	3 cut(s)	238, 448, 631
BccI	CCATC	3 cut(s)	351, 929, 995
BciT130I	CCWGG	6 cut(s)	127, 687, 879, 948, 1067, 1122
BcoDI	GTCTC	2 cut(s)	263, 802
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	2 cut(s)	216, 645
BfoI	RGCGCY	1 cut(s)	715
BfuAI	ACCTGC	1 cut(s)	1100
BisI	GCNGC	4 cut(s)	46, 252, 462, 645
BlsI	GCNGC	4 cut(s)	47, 253, 463, 646
Bme1390I	CCNGG	6 cut(s)	127, 687, 879, 948, 1067, 1122
Bme18I	GGWCC	3 cut(s)	749, 1069, 1102
BmeT110I	CYCGRG	1 cut(s)	481
BmgT120I	GGNCC	3 cut(s)	749, 1069, 1102
BmiI	GGNNCC	4 cut(s)	10, 691, 1006, 1071
BmrFI	CCNGG	6 cut(s)	127, 687, 879, 948, 1067, 1122
BmrI	ACTGGG	2 cut(s)	117, 980
BmsI	GCATC	5 cut(s)	251, 308, 361, 750, 1012
BmtI	GCTAGC	1 cut(s)	332
BmuI	ACTGGG	2 cut(s)	117, 980
BpiI	GAAGAC	1 cut(s)	987
BplI	GAGNNNNNCTC	2 cut(s)	1024, 1056
BsaBI	GATNNNNATC	1 cut(s)	939
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	125, 126
Bse1I	ACTGG	5 cut(s)	112, 168, 751, 796, 986
Bse8I	GATNNNNATC	1 cut(s)	939
BseBI	CCWGG	6 cut(s)	127, 687, 879, 948, 1067, 1122
BseDI	CCNNGG	2 cut(s)	125, 126
BseGI	GGATG	5 cut(s)	343, 623, 765, 1006, 1093
BseJI	GATNNNNATC	1 cut(s)	939
BseMII	CTCAG	2 cut(s)	1022, 1055
BseNI	ACTGG	5 cut(s)	112, 168, 751, 796, 986
BseRI	GAGGAG	2 cut(s)	96, 440
BseSI	GKGCMC	1 cut(s)	654
BseXI	GCAGC	3 cut(s)	238, 448, 631
BsgI	GTGCAG	1 cut(s)	1128
BshFI	GGCC	1 cut(s)	456
BshNI	GGYRCC	2 cut(s)	689, 1004
BsiHKCI	CYCGRG	1 cut(s)	481
BsiWI	CGTACG	1 cut(s)	405
BslFI	GGGAC	2 cut(s)	802, 1055
BsmAI	GTCTC	2 cut(s)	263, 802
BsmFI	GGGAC	2 cut(s)	802, 1055
BsnI	GGCC	1 cut(s)	456
BsoBI	CYCGRG	1 cut(s)	481
Bsp1286I	GDGCHC	1 cut(s)	654
Bsp143I	GATC	4 cut(s)	224, 364, 928, 952
BspACI	CCGC	3 cut(s)	46, 666, 918
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	2 cut(s)	1023, 1054
BspLI	GGNNCC	4 cut(s)	10, 691, 1006, 1071
BspMAI	CTGCAG	1 cut(s)	649
BspMI	ACCTGC	1 cut(s)	1100
BspOI	GCTAGC	1 cut(s)	332
BspPI	GGATC	2 cut(s)	359, 923
BspT107I	GGYRCC	2 cut(s)	689, 1004
BsrBI	CCGCTC	1 cut(s)	48
BsrI	ACTGG	5 cut(s)	112, 168, 751, 796, 986
BssECI	CCNNGG	2 cut(s)	125, 126
BssMI	GATC	4 cut(s)	224, 364, 928, 952
BssNAI	GTATAC	1 cut(s)	64
BssNI	GRCGYC	1 cut(s)	18
BssSI	CACGAG	1 cut(s)	805
Bst1107I	GTATAC	1 cut(s)	64
Bst2BI	CACGAG	1 cut(s)	805
Bst2UI	CCWGG	6 cut(s)	127, 687, 879, 948, 1067, 1122
Bst4CI	ACNGT	2 cut(s)	220, 631
BstACI	GRCGYC	1 cut(s)	18
BstC8I	GCNNGC	3 cut(s)	43, 330, 664
BstDEI	CTNAG	2 cut(s)	1031, 1041
BstF5I	GGATG	5 cut(s)	343, 623, 765, 1006, 1093
BstH2I	RGCGCY	1 cut(s)	715
BstHHI	GCGC	1 cut(s)	714
BstKTI	GATC	4 cut(s)	227, 367, 931, 955
BstMAI	GTCTC	2 cut(s)	263, 802
BstMBI	GATC	4 cut(s)	224, 364, 928, 952
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 248
BstNI	CCWGG	6 cut(s)	127, 687, 879, 948, 1067, 1122
BstNSI	RCATGY	3 cut(s)	547, 666, 774
BstSCI	CCNGG	6 cut(s)	125, 685, 877, 946, 1065, 1120
BstSFI	CTRYAG	2 cut(s)	216, 645
BstSLI	GKGCMC	1 cut(s)	654
BstV1I	GCAGC	3 cut(s)	238, 448, 631
BstV2I	GAAGAC	1 cut(s)	987
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BstZ17I	GTATAC	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	456
BtsCI	GGATG	5 cut(s)	343, 623, 765, 1006, 1093
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	3 cut(s)	105, 225, 654
BveI	ACCTGC	1 cut(s)	1100
Cac8I	GCNNGC	3 cut(s)	43, 330, 664
CfoI	GCGC	1 cut(s)	714
Cfr13I	GGNCC	3 cut(s)	749, 1069, 1102
CseI	GACGC	2 cut(s)	7, 422
Csp6I	GTAC	4 cut(s)	204, 406, 1094, 1113
CviQI	GTAC	4 cut(s)	204, 406, 1094, 1113
DdeI	CTNAG	2 cut(s)	1031, 1041
DpnI	GATC	4 cut(s)	226, 366, 930, 954
DpnII	GATC	4 cut(s)	224, 364, 928, 952
DraI	TTTAAA	1 cut(s)	514
EaeI	YGGCCR	1 cut(s)	454
Eco32I	GATATC	2 cut(s)	574, 871
Eco47I	GGWCC	3 cut(s)	749, 1069, 1102
Eco47III	AGCGCT	1 cut(s)	713
Eco88I	CYCGRG	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	1069
EcoRII	CCWGG	6 cut(s)	125, 685, 877, 946, 1065, 1120
EcoRV	GATATC	2 cut(s)	574, 871
FalI	AAGNNNNNCTT	2 cut(s)	1121, 1153
FaqI	GGGAC	2 cut(s)	802, 1055
FblI	GTMKAC	2 cut(s)	63, 885
Fnu4HI	GCNGC	4 cut(s)	46, 252, 462, 645
FokI	GGATG	5 cut(s)	330, 630, 772, 1013, 1100
Fsp4HI	GCNGC	4 cut(s)	46, 252, 462, 645
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	1 cut(s)	713
GluI	GCNGC	4 cut(s)	46, 252, 462, 645
HaeII	RGCGCY	1 cut(s)	715
HaeIII	GGCC	1 cut(s)	456
HgaI	GACGC	2 cut(s)	7, 422
HhaI	GCGC	1 cut(s)	714
Hin1I	GRCGYC	1 cut(s)	18
Hin6I	GCGC	1 cut(s)	712
HinP1I	GCGC	1 cut(s)	712
HincII	GTYRAC	1 cut(s)	437
HindII	GTYRAC	1 cut(s)	437
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	4 cut(s)	505, 701, 818, 1158
HphI	GGTGA	1 cut(s)	962
Hpy166II	GTNNAC	4 cut(s)	64, 178, 437, 886
Hpy188I	TCNGA	3 cut(s)	304, 555, 1163
Hpy188III	TCNNGA	7 cut(s)	347, 368, 389, 502, 569, 932, 1030
Hpy8I	GTNNAC	4 cut(s)	64, 178, 437, 886
HpyAV	CCTTC	5 cut(s)	153, 177, 607, 1123, 1182
HpyCH4III	ACNGT	2 cut(s)	220, 631
HpyCH4V	TGCA	9 cut(s)	117, 242, 299, 374, 464, 647, 742, 763, 1109
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 248
HpyF3I	CTNAG	2 cut(s)	1031, 1041
Hsp92I	GRCGYC	1 cut(s)	18
HspAI	GCGC	1 cut(s)	712
Kzo9I	GATC	4 cut(s)	224, 364, 928, 952
LmnI	GCTCC	5 cut(s)	14, 53, 194, 345, 923
Lsp1109I	GCAGC	3 cut(s)	238, 448, 631
LweI	GCATC	5 cut(s)	251, 308, 361, 750, 1012
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	631, 961
MalI	GATC	4 cut(s)	226, 366, 930, 954
MbiI	CCGCTC	1 cut(s)	48
MboI	GATC	4 cut(s)	224, 364, 928, 952
MboII	GAAGA	7 cut(s)	138, 374, 482, 529, 992, 1156, 1167
MfeI	CAATTG	1 cut(s)	208
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	654
MlsI	TGGCCA	1 cut(s)	456
MluCI	AATT	6 cut(s)	208, 228, 556, 799, 842, 1047
MluNI	TGGCCA	1 cut(s)	456
MlyI	GAGTC	1 cut(s)	812
MnlI	CCTC	8 cut(s)	67, 74, 77, 403, 418, 442, 693, 1049
Mox20I	TGGCCA	1 cut(s)	456
MroXI	GAANNNNTTC	2 cut(s)	142, 609
MscI	TGGCCA	1 cut(s)	456
MseI	TTAA	4 cut(s)	102, 513, 969, 1139
MslI	CAYNNNNRTG	1 cut(s)	1020
Msp20I	TGGCCA	1 cut(s)	456
MspR9I	CCNGG	6 cut(s)	127, 687, 879, 948, 1067, 1122
MunI	CAATTG	1 cut(s)	208
MvaI	CCWGG	6 cut(s)	127, 687, 879, 948, 1067, 1122
MwoI	GCNNNNNNNGC	2 cut(s)	15, 248
NdeII	GATC	4 cut(s)	224, 364, 928, 952
NheI	GCTAGC	1 cut(s)	328
NlaIV	GGNNCC	4 cut(s)	10, 691, 1006, 1071
NmuCI	GTSAC	1 cut(s)	631
NspI	RCATGY	3 cut(s)	547, 666, 774
PaeI	GCATGC	1 cut(s)	666
PasI	CCCWGGG	1 cut(s)	126
PciI	ACATGT	2 cut(s)	543, 770
PdmI	GAANNNNTTC	2 cut(s)	142, 609
PfeI	GAWTC	3 cut(s)	505, 701, 1158
Pfl23II	CGTACG	1 cut(s)	405
PkrI	GCNGC	4 cut(s)	47, 253, 463, 646
PleI	GAGTC	1 cut(s)	812
PpsI	GAGTC	1 cut(s)	812
PpuMI	RGGWCCY	1 cut(s)	1069
PscI	ACATGT	2 cut(s)	543, 770
Psp5II	RGGWCCY	1 cut(s)	1069
Psp6I	CCWGG	6 cut(s)	125, 685, 877, 946, 1065, 1120
PspGI	CCWGG	6 cut(s)	125, 685, 877, 946, 1065, 1120
PspLI	CGTACG	1 cut(s)	405
PspN4I	GGNNCC	4 cut(s)	10, 691, 1006, 1071
PspPI	GGNCC	3 cut(s)	749, 1069, 1102
PspPPI	RGGWCCY	1 cut(s)	1069
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	4 cut(s)	205, 407, 1095, 1114
RsaNI	GTAC	4 cut(s)	204, 406, 1094, 1113
RseI	CAYNNNNRTG	1 cut(s)	1020
SaqAI	TTAA	4 cut(s)	102, 513, 969, 1139
SatI	GCNGC	4 cut(s)	46, 252, 462, 645
Sau3AI	GATC	4 cut(s)	224, 364, 928, 952
Sau96I	GGNCC	3 cut(s)	749, 1069, 1102
SchI	GAGTC	1 cut(s)	812
ScrFI	CCNGG	6 cut(s)	127, 687, 879, 948, 1067, 1122
SduI	GDGCHC	1 cut(s)	654
SfaNI	GCATC	5 cut(s)	251, 308, 361, 750, 1012
SfcI	CTRYAG	2 cut(s)	216, 645
SinI	GGWCC	3 cut(s)	749, 1069, 1102
SmiMI	CAYNNNNRTG	1 cut(s)	1020
SphI	GCATGC	1 cut(s)	666
Sse9I	AATT	6 cut(s)	208, 228, 556, 799, 842, 1047
SsiI	CCGC	3 cut(s)	46, 666, 918
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	6 cut(s)	125, 685, 877, 946, 1065, 1120
TaaI	ACNGT	2 cut(s)	220, 631
TasI	AATT	6 cut(s)	208, 228, 556, 799, 842, 1047
TatI	WGTACW	1 cut(s)	1093
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	3 cut(s)	505, 701, 1158
Tru1I	TTAA	4 cut(s)	102, 513, 969, 1139
Tru9I	TTAA	4 cut(s)	102, 513, 969, 1139
TscAI	CASTG	3 cut(s)	112, 225, 654
TseFI	GTSAC	1 cut(s)	631
TseI	GCWGC	3 cut(s)	251, 461, 644
Tsp45I	GTSAC	1 cut(s)	631
TspDTI	ATGAA	6 cut(s)	221, 589, 727, 866, 909, 1004
TspGWI	ACGGA	5 cut(s)	49, 498, 539, 983, 1094
TspRI	CASTG	3 cut(s)	112, 225, 654
VpaK11BI	GGWCC	3 cut(s)	749, 1069, 1102
XapI	RAATTY	2 cut(s)	556, 842
XceI	RCATGY	3 cut(s)	547, 666, 774
XmiI	GTMKAC	2 cut(s)	63, 885
XmnI	GAANNNNTTC	2 cut(s)	142, 609
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.