Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004458

Physical Location & Seq

Genomic Coordinates Reverse (-)

37097217 .. 37104345

Gene Structure 7129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1316500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGTTCGCTCCAATGGCGTCAGGCTCGTCAACTGGCTCGCTCGTCGCTCTATTGCATCCAACGTCCCTTCATCTTCCGTGTACGGGAGGGTGTTTGGAGGTGGTTATAGGACATTCAGGACTGGGGTTTGCAACAATTCCAGAGTTTTAGTGGGAGATTATACTAATACTAATAATGTGTGTAAAAAGAGTTGGTTGCTGGGAGATTGGTTCGCAGTGAGATCAATTCATGGAACTGCATCTATGTCTGTGAGAGACTACTACGAGACACTTGGTGTGAGCAAGAATGCGAGTTCCTCGGAAATAAAGAAAGCTTATTATGGGCTAGCAAAGAAGCTCCATCCAGACACTAATAAAAATGATCCTGATACAGAAAAGAAGTTTCAAGAAGTTCAAAAGGCCTATGAGGTTTTGAAAGATGAGGAAAAACGTCAAGAATATGACCAGATGGGCCATGACGCATATGAGAATCAAGGCAACGGCTTTCCAAATGATTTCAGAAATCCATTTAAAGATATATTTGATGAAAATATCTTCAACATTTTCCGTCAGAATGGTGGTCAAGACATCAAGGTTACTTTGGAACTATCCTTCATGGAAGCTGTTCAGGGATGTGCTAAAACGGTGTCATTTCAAGCTGCAGTGCCTTGTGAAGCCTGTGGTGGAAGTGGTGTTCCCCCTGGCACCAGACCTGAATCATGTAAGCGCTGTAAAGGGTCTGGGATGACTTTCATGCAAACTGGCCCATTTAGGATGCAGACAACTTGTTCTCAGTGTGGGGGGACTGGTAAAACTTTCCCGAGACTTTGCAATTCGTGTAATGGAAGACGGGTCAAAAGTGGTATGAAGTCGGTCAAGTTAGACATCATGCCAGGTGTTGATGACAATGAAACTATAAGAGTGTTTAGTAGCGGTGGGGCTGATCCTGATGGAATGCAACCTGGTGATCTTTTTGTTACCATTAAGGTTAGGGAAGACCCAGTTTTCCGTAGAGAAGGTGCAGACATTCATGTAGATGCTGTTCTCAGTATAACTCAGGCAATTTTGGGAGGAACTATCCAGGTCCCAACTCTCACGGGCGATGTTGTATTAAAGGTTCGTGCTGGCACCCAACCTGGTCAGAAGGTAGTCTTGAAGAAGAAAGGGATAAAGACGAGGAACTCTTATACGTTTGGTGATCAATACGTGCATTTCAATGTCAGCATTCCAACGAATCTGACTCAAAGGCAACGCGAATTAATTGAAGAGTTTGCCAAAGAAGAACAGGGGGAATATGGTAAGCATGCAGCTGCGGGTGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000740 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006458 GO:0006996 GO:0006997 GO:0007275 GO:0007349 GO:0008150 GO:0008219 GO:0009553 GO:0009558 GO:0009559 GO:0009561 GO:0009653 GO:0009856 GO:0009987 GO:0010197 GO:0010198 GO:0010623 GO:0012501 GO:0016043 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048229 GO:0048284 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051084 GO:0051085 GO:0051704 GO:0061024 GO:0061025 GO:0061077 GO:0071840 GO:0090174

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

435

Amino Acids

47.84

Weight (kDa)

9.03

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	86 - 148	7.5e-27	DnaJ domain
DnaJ_C	PF01556	190 - 403	2.2e-43	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	217 - 276	3.1e-12	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48030
fragaria_vesca	FvH4_2g18630 FvH4_2g18630 FvH4_7g00600 FvH4_7g00600 FvH4_7g00600
malus_domestica	MD02G1316500.v1.1
prunus_persica	Prupe.2G007700_v2.0.a1
pyrus_communis	pycom02g26520
rosa_chinensis	RchiOBHm_Chr1g0314781 RchiOBHm_Chr6g0284191
rosa_laevigata	RLG00000012758 RLG00000030764
rosa_multiflora	Rmu_sc0002833.1_g000038 Rmu_sc0003778.1_g000002
rosa_roxburghii	Rroxscaffold_4G00331880 Rroxscaffold_7G00184800
rosa_rugosa	Rorug01G0001800 Rorug01G0001800 Rorug06G0161800
rosa_samantha	Rh1AG012700 Rh1BG004300 Rh1CG011200 Rh1DG006000 Rh6AG274600 Rh6BG275100 Rh6CG064000 Rh6CG276800 Rh6DG061100 Rh6DG269400
rosa_wichuraiana	Rw1G000530 Rw6G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	683, 1106
AccII	CGCG	1 cut(s)	1233
AciI	CCGC	2 cut(s)	912, 1292
AclWI	GGATC	2 cut(s)	356, 917
AcyI	GRCGYC	1 cut(s)	18
AdeI	CACNNNGTG	1 cut(s)	275
AfaI	GTAC	1 cut(s)	83
AfeI	AGCGCT	1 cut(s)	707
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	8 cut(s)	386, 395, 415, 538, 635, 1135, 1195, 1244
AjnI	CCWGG	5 cut(s)	679, 871, 940, 1059, 1114
AloI	GAACNNNNNNTCC	2 cut(s)	657, 689
AluBI	AGCT	5 cut(s)	314, 337, 602, 638, 1289
AluI	AGCT	5 cut(s)	314, 337, 602, 638, 1289
Alw26I	GTCTC	3 cut(s)	249, 260, 796
AlwI	GGATC	2 cut(s)	356, 917
Ama87I	CYCGRG	1 cut(s)	799
Aor51HI	AGCGCT	1 cut(s)	707
AoxI	GGCC	3 cut(s)	399, 451, 742
ApeKI	GCWGC	3 cut(s)	638, 1286, 1289
AseI	ATTAAT	1 cut(s)	1238
Asp700I	GAANNNNTTC	1 cut(s)	603
AspLEI	GCGC	1 cut(s)	708
AspS9I	GGNCC	3 cut(s)	451, 743, 1063
AsuHPI	GGTGA	2 cut(s)	956, 1187
AsuNHI	GCTAGC	1 cut(s)	325
AvaI	CYCGRG	1 cut(s)	799
AvaII	GGWCC	1 cut(s)	1063
BanI	GGYRCC	2 cut(s)	683, 1106
BbsI	GAAGAC	2 cut(s)	832, 981
BbvI	GCAGC	3 cut(s)	625, 1276, 1298
BccI	CCATC	3 cut(s)	348, 442, 923
BceAI	ACGGC	1 cut(s)	496
BciT130I	CCWGG	5 cut(s)	681, 873, 942, 1061, 1116
BclI	TGATCA	1 cut(s)	1177
BcoDI	GTCTC	3 cut(s)	249, 260, 796
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	639
BfoI	RGCGCY	1 cut(s)	709
BisI	GCNGC	3 cut(s)	639, 1287, 1290
BlsI	GCNGC	3 cut(s)	640, 1288, 1291
Bme1390I	CCNGG	5 cut(s)	681, 873, 942, 1061, 1116
Bme18I	GGWCC	1 cut(s)	1063
BmeT110I	CYCGRG	1 cut(s)	799
BmgT120I	GGNCC	3 cut(s)	451, 743, 1063
BmiI	GGNNCC	3 cut(s)	685, 1065, 1108
BmrFI	CCNGG	5 cut(s)	681, 873, 942, 1061, 1116
BmrI	ACTGGG	2 cut(s)	132, 974
BmsI	GCATC	4 cut(s)	65, 248, 744, 1006
BmtI	GCTAGC	1 cut(s)	329
BmuI	ACTGGG	2 cut(s)	132, 974
BpiI	GAAGAC	2 cut(s)	832, 981
BsaAI	YACGTR	1 cut(s)	1186
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	297, 679
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	5 cut(s)	38, 127, 745, 790, 980
BseBI	CCWGG	5 cut(s)	681, 873, 942, 1061, 1116
BseDI	CCNNGG	2 cut(s)	297, 679
BseGI	GGATG	5 cut(s)	56, 340, 617, 729, 759
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMII	CTCAG	3 cut(s)	785, 1039, 1049
BseNI	ACTGG	5 cut(s)	38, 127, 745, 790, 980
BseXI	GCAGC	3 cut(s)	625, 1276, 1298
BseYI	CCCAGC	1 cut(s)	199
BsgI	GTGCAG	1 cut(s)	1020
Bsh1236I	CGCG	1 cut(s)	1233
BshFI	GGCC	3 cut(s)	401, 453, 744
BshNI	GGYRCC	2 cut(s)	683, 1106
BsiHKCI	CYCGRG	1 cut(s)	799
BslFI	GGGAC	3 cut(s)	50, 796, 1049
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	3 cut(s)	249, 260, 796
BsmFI	GGGAC	3 cut(s)	50, 796, 1049
BsmI	GAATGC	3 cut(s)	292, 939, 1203
BsnI	GGCC	3 cut(s)	401, 453, 744
BsoBI	CYCGRG	1 cut(s)	799
Bsp143I	GATC	5 cut(s)	221, 361, 922, 946, 1177
BspACI	CCGC	2 cut(s)	912, 1292
BspANI	GGCC	3 cut(s)	401, 453, 744
BspCNI	CTCAG	3 cut(s)	784, 1038, 1048
BspFNI	CGCG	1 cut(s)	1233
BspLI	GGNNCC	3 cut(s)	685, 1065, 1108
BspMAI	CTGCAG	1 cut(s)	643
BspOI	GCTAGC	1 cut(s)	329
BspPI	GGATC	2 cut(s)	356, 917
BspT107I	GGYRCC	2 cut(s)	683, 1106
BsrI	ACTGG	5 cut(s)	38, 127, 745, 790, 980
BssECI	CCNNGG	2 cut(s)	297, 679
BssMI	GATC	5 cut(s)	221, 361, 922, 946, 1177
BssNI	GRCGYC	1 cut(s)	18
Bst2UI	CCWGG	5 cut(s)	681, 873, 942, 1061, 1116
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	1 cut(s)	1239
BstACI	GRCGYC	1 cut(s)	18
BstBAI	YACGTR	1 cut(s)	1186
BstC8I	GCNNGC	4 cut(s)	39, 327, 1105, 1284
BstDEI	CTNAG	3 cut(s)	771, 1025, 1035
BstF5I	GGATG	5 cut(s)	56, 340, 617, 729, 759
BstFNI	CGCG	1 cut(s)	1233
BstH2I	RGCGCY	1 cut(s)	709
BstHHI	GCGC	1 cut(s)	708
BstKTI	GATC	5 cut(s)	224, 364, 925, 949, 1180
BstMAI	GTCTC	3 cut(s)	249, 260, 796
BstMBI	GATC	5 cut(s)	221, 361, 922, 946, 1177
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 1295
BstNI	CCWGG	5 cut(s)	681, 873, 942, 1061, 1116
BstNSI	RCATGY	1 cut(s)	1286
BstSCI	CCNGG	5 cut(s)	679, 871, 940, 1059, 1114
BstSFI	CTRYAG	1 cut(s)	639
BstUI	CGCG	1 cut(s)	1233
BstV1I	GCAGC	3 cut(s)	625, 1276, 1298
BstV2I	GAAGAC	2 cut(s)	832, 981
BsuRI	GGCC	3 cut(s)	401, 453, 744
BtgZI	GCGATG	1 cut(s)	1095
BtsCI	GGATG	5 cut(s)	56, 340, 617, 729, 759
BtsI	GCAGTG	2 cut(s)	222, 648
BtsIMutI	CAGTG	3 cut(s)	222, 648, 779
Cac8I	GCNNGC	4 cut(s)	39, 327, 1105, 1284
CfoI	GCGC	1 cut(s)	708
Cfr13I	GGNCC	3 cut(s)	451, 743, 1063
CseI	GACGC	2 cut(s)	7, 467
CsiI	ACCWGGT	2 cut(s)	940, 1114
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	8 cut(s)	230, 455, 595, 699, 733, 868, 1010, 1283
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	3 cut(s)	771, 1025, 1035
DpnI	GATC	5 cut(s)	223, 363, 924, 948, 1179
DpnII	GATC	5 cut(s)	221, 361, 922, 946, 1177
DraI	TTTAAA	1 cut(s)	511
DraIII	CACNNNGTG	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	1239
EarI	CTCTTC	1 cut(s)	1239
Eco147I	AGGCCT	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	1063
Eco47III	AGCGCT	1 cut(s)	707
Eco88I	CYCGRG	1 cut(s)	799
EcoO109I	RGGNCCY	1 cut(s)	1063
EcoRII	CCWGG	5 cut(s)	679, 871, 940, 1059, 1114
FaeI	CATG	8 cut(s)	233, 458, 598, 702, 736, 871, 1013, 1286
FalI	AAGNNNNNCTT	2 cut(s)	1115, 1147
FaqI	GGGAC	3 cut(s)	50, 796, 1049
FatI	CATG	8 cut(s)	229, 454, 594, 698, 732, 867, 1009, 1282
FauI	CCCGC	1 cut(s)	1285
FauNDI	CATATG	1 cut(s)	463
FbaI	TGATCA	1 cut(s)	1177
Fnu4HI	GCNGC	3 cut(s)	639, 1287, 1290
FokI	GGATG	5 cut(s)	43, 327, 624, 736, 766
Fsp4HI	GCNGC	3 cut(s)	639, 1287, 1290
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	1 cut(s)	707
GluI	GCNGC	3 cut(s)	639, 1287, 1290
GsaI	CCCAGC	1 cut(s)	203
HaeII	RGCGCY	1 cut(s)	709
HaeIII	GGCC	3 cut(s)	401, 453, 744
HgaI	GACGC	2 cut(s)	7, 467
HhaI	GCGC	1 cut(s)	708
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	8 cut(s)	233, 458, 598, 702, 736, 871, 1013, 1286
Hin6I	GCGC	1 cut(s)	706
HinP1I	GCGC	1 cut(s)	706
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	312
HinfI	GANTC	4 cut(s)	469, 695, 1213, 1219
HphI	GGTGA	2 cut(s)	956, 1187
Hpy166II	GTNNAC	2 cut(s)	31, 82
Hpy188I	TCNGA	5 cut(s)	301, 500, 552, 1122, 1218
Hpy8I	GTNNAC	2 cut(s)	31, 82
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	4 cut(s)	78, 601, 989, 1117
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	4 cut(s)	63, 430, 1169, 1185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 1295
HpyF3I	CTNAG	3 cut(s)	771, 1025, 1035
HpySE526I	ACGT	4 cut(s)	63, 430, 1169, 1185
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	8 cut(s)	233, 458, 598, 702, 736, 871, 1013, 1286
HspAI	GCGC	1 cut(s)	706
Ksp22I	TGATCA	1 cut(s)	1177
Kzo9I	GATC	5 cut(s)	221, 361, 922, 946, 1177
LmnI	GCTCC	2 cut(s)	14, 342
Lsp1109I	GCAGC	3 cut(s)	625, 1276, 1298
LweI	GCATC	4 cut(s)	65, 248, 744, 1006
MabI	ACCWGGT	2 cut(s)	940, 1114
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	4 cut(s)	63, 430, 1169, 1185
MaeIII	GTNAC	2 cut(s)	574, 955
MalI	GATC	5 cut(s)	223, 363, 924, 948, 1179
MboI	GATC	5 cut(s)	221, 361, 922, 946, 1177
MboII	GAAGA	8 cut(s)	66, 526, 837, 986, 1147, 1150, 1256, 1271
MluCI	AATT	6 cut(s)	136, 225, 811, 1041, 1235, 1239
MlyI	GAGTC	1 cut(s)	1213
MmeI	TCCRAC	2 cut(s)	84, 1232
MnlI	CCTC	7 cut(s)	81, 92, 307, 400, 415, 1043, 1149
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	4 cut(s)	510, 963, 1091, 1238
MslI	CAYNNNNRTG	2 cut(s)	1014, 1194
MspA1I	CMGCKG	1 cut(s)	1289
MspR9I	CCNGG	5 cut(s)	681, 873, 942, 1061, 1116
Mva1269I	GAATGC	3 cut(s)	292, 939, 1203
MvaI	CCWGG	5 cut(s)	681, 873, 942, 1061, 1116
MvnI	CGCG	1 cut(s)	1233
MwoI	GCNNNNNNNGC	2 cut(s)	15, 1295
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	5 cut(s)	221, 361, 922, 946, 1177
NheI	GCTAGC	1 cut(s)	325
NlaIII	CATG	8 cut(s)	233, 458, 598, 702, 736, 871, 1013, 1286
NlaIV	GGNNCC	3 cut(s)	685, 1065, 1108
NspI	RCATGY	1 cut(s)	1286
PaeI	GCATGC	1 cut(s)	1286
PceI	AGGCCT	1 cut(s)	401
PctI	GAATGC	3 cut(s)	292, 939, 1203
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	3 cut(s)	469, 695, 1213
PkrI	GCNGC	3 cut(s)	640, 1288, 1291
PleI	GAGTC	1 cut(s)	1213
PpsI	GAGTC	1 cut(s)	1213
Ppu21I	YACGTR	1 cut(s)	1186
PpuMI	RGGWCCY	1 cut(s)	1063
PshBI	ATTAAT	1 cut(s)	1238
Psp5II	RGGWCCY	1 cut(s)	1063
Psp6I	CCWGG	5 cut(s)	679, 871, 940, 1059, 1114
PspFI	CCCAGC	1 cut(s)	199
PspGI	CCWGG	5 cut(s)	679, 871, 940, 1059, 1114
PspN4I	GGNNCC	3 cut(s)	685, 1065, 1108
PspPI	GGNCC	3 cut(s)	451, 743, 1063
PspPPI	RGGWCCY	1 cut(s)	1063
PsrI	GAACNNNNNNTAC	4 cut(s)	1005, 1037, 1080, 1112
PstI	CTGCAG	1 cut(s)	643
PvuII	CAGCTG	1 cut(s)	1289
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	2 cut(s)	1014, 1194
SaqAI	TTAA	4 cut(s)	510, 963, 1091, 1238
SatI	GCNGC	3 cut(s)	639, 1287, 1290
Sau3AI	GATC	5 cut(s)	221, 361, 922, 946, 1177
Sau96I	GGNCC	3 cut(s)	451, 743, 1063
SchI	GAGTC	1 cut(s)	1213
ScrFI	CCNGG	5 cut(s)	681, 873, 942, 1061, 1116
SexAI	ACCWGGT	2 cut(s)	940, 1114
SfaNI	GCATC	4 cut(s)	65, 248, 744, 1006
SfcI	CTRYAG	1 cut(s)	639
SinI	GGWCC	1 cut(s)	1063
SmiMI	CAYNNNNRTG	2 cut(s)	1014, 1194
SphI	GCATGC	1 cut(s)	1286
Sse9I	AATT	6 cut(s)	136, 225, 811, 1041, 1235, 1239
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	2 cut(s)	912, 1292
SspMI	CTAG	1 cut(s)	326
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	5 cut(s)	679, 871, 940, 1059, 1114
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	4 cut(s)	66, 433, 1172, 1188
TaqII	GACCGA	1 cut(s)	841
TasI	AATT	6 cut(s)	136, 225, 811, 1041, 1235, 1239
TfiI	GAWTC	3 cut(s)	469, 695, 1213
Tru1I	TTAA	4 cut(s)	510, 963, 1091, 1238
Tru9I	TTAA	4 cut(s)	510, 963, 1091, 1238
TscAI	CASTG	3 cut(s)	222, 648, 779
TseI	GCWGC	3 cut(s)	638, 1286, 1289
TspDTI	ATGAA	8 cut(s)	60, 218, 540, 583, 721, 860, 903, 998
TspGWI	ACGGA	3 cut(s)	67, 536, 977
TspRI	CASTG	3 cut(s)	222, 648, 779
VpaK11BI	GGWCC	1 cut(s)	1063
VspI	ATTAAT	1 cut(s)	1238
XceI	RCATGY	1 cut(s)	1286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.