Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004458

Physical Location & Seq

Genomic Coordinates Forward (+)

2112303 .. 2119348

Gene Structure 7046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG012700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTTCCGTCAGAATTTTGGTGGTCAAGATATCAAGGTTGCTTTGGAACTATCCTTCATGGAAGCTGTTCAGGGATGTGCCAAAACTGTGACATTTCAGGCTGCAGTGCCCTGTGAAGCATGCGGTGGAAGTGGTGTTCCCCCTGGCACCAGACCAGAATCATGTAAGCGCTGTAAAGGGTCTGGCATGACTTTCATGCAAACTGGTCCATTTAGGATGCAGACAACATGTTCTCAATGTGGTGGGACTGGTAAAAATTACACGAGACTTTGCGACTCATGTAATGGAAAACGGGTCAAATTTGGAATGAAGTCAGTCAAGTTAGATATCATGCCAGGAGTAGACAATAATGAAACTATACGGGTATTTGGTAGCGGTGGAGCTGATCCCGATGGAAATCAGCCTGGTGATCTTTATGTTACCATTAAGGTTAGGGAAGACCCAGTTTTCCGTAGGGATGGTGCCGATATTCATGTAGATGCTGTCCTGAGTATCACTCAGGCAATTTTGGGAGGAACTATCCAGGTCCCAACTCTTACAGGGGATGTTGTACTAAAGGTCCGTGCAGGTACGCAACCTGGACAGAAGGTAGTCTTAAAGAAGAAAGGAATCAAGACAAGGAGCTCTTATTCCTTTGGCGATCAATATGTGCACTTTAATGTCAGCATCCCAACGAATCTGACTCAAAGACAACGTGAATTAATCGAAGAGTTTTCCAAAGAGGAACAAGGGGAATACGGTAAGCGTGAGGCTGCAGGAGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000740 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006458 GO:0006996 GO:0006997 GO:0007275 GO:0007349 GO:0008150 GO:0008219 GO:0009553 GO:0009558 GO:0009559 GO:0009561 GO:0009653 GO:0009856 GO:0009987 GO:0010197 GO:0010198 GO:0010623 GO:0012501 GO:0016043 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048229 GO:0048284 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051084 GO:0051085 GO:0051704 GO:0061024 GO:0061025 GO:0061077 GO:0071840 GO:0090174

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

255

Amino Acids

27.51

Weight (kDa)

8.94

Isoelectric Point (pI)

29.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	11 - 224	3.4e-44	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	38 - 97	4.1e-12	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48030
fragaria_vesca	FvH4_2g18630 FvH4_2g18630 FvH4_7g00600 FvH4_7g00600 FvH4_7g00600
malus_domestica	MD02G1316500.v1.1
prunus_persica	Prupe.2G007700_v2.0.a1
pyrus_communis	pycom02g26520
rosa_chinensis	RchiOBHm_Chr1g0314781 RchiOBHm_Chr6g0284191
rosa_laevigata	RLG00000012758 RLG00000030764
rosa_multiflora	Rmu_sc0002833.1_g000038 Rmu_sc0003778.1_g000002
rosa_roxburghii	Rroxscaffold_4G00331880 Rroxscaffold_7G00184800
rosa_rugosa	Rorug01G0001800 Rorug01G0001800 Rorug06G0161800
rosa_samantha	Rh1AG012700 Rh1BG004300 Rh1CG011200 Rh1DG006000 Rh6AG274600 Rh6BG275100 Rh6CG064000 Rh6CG276800 Rh6DG061100 Rh6DG269400
rosa_wichuraiana	Rw1G000530 Rw6G023620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	557
AccB1I	GGYRCC	2 cut(s)	146, 461
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	2 cut(s)	123, 375
AclWI	GGATC	1 cut(s)	380
AcsI	RAATTY	2 cut(s)	13, 299
AfaI	GTAC	2 cut(s)	552, 571
AfeI	AGCGCT	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	227
AjnI	CCWGG	5 cut(s)	142, 334, 403, 522, 577
AloI	GAACNNNNNNTCC	2 cut(s)	120, 152
AluBI	AGCT	3 cut(s)	65, 383, 624
AluI	AGCT	3 cut(s)	65, 383, 624
Alw21I	GWGCWC	2 cut(s)	626, 654
Alw26I	GTCTC	1 cut(s)	259
Alw44I	GTGCAC	1 cut(s)	650
AlwI	GGATC	1 cut(s)	380
Aor51HI	AGCGCT	1 cut(s)	170
ApaLI	GTGCAC	1 cut(s)	650
ApeKI	GCWGC	2 cut(s)	101, 752
ApoI	RAATTY	2 cut(s)	13, 299
AseI	ATTAAT	1 cut(s)	701
Asp700I	GAANNNNTTC	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	3 cut(s)	206, 526, 559
AsuHPI	GGTGA	1 cut(s)	419
AvaII	GGWCC	3 cut(s)	206, 526, 559
BaeGI	GKGCMC	2 cut(s)	111, 654
BanI	GGYRCC	2 cut(s)	146, 461
BanII	GRGCYC	1 cut(s)	626
BauI	CACGAG	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	2 cut(s)	626, 654
BbvI	GCAGC	2 cut(s)	88, 739
BccI	CCATC	2 cut(s)	386, 452
BciT130I	CCWGG	5 cut(s)	144, 336, 405, 524, 579
BcoDI	GTCTC	1 cut(s)	259
BfmI	CTRYAG	2 cut(s)	102, 753
BfoI	RGCGCY	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	557
BisI	GCNGC	2 cut(s)	102, 753
BlsI	GCNGC	2 cut(s)	103, 754
Bme1390I	CCNGG	5 cut(s)	144, 336, 405, 524, 579
Bme18I	GGWCC	3 cut(s)	206, 526, 559
BmgT120I	GGNCC	3 cut(s)	206, 526, 559
BmiI	GGNNCC	3 cut(s)	148, 463, 528
BmrFI	CCNGG	5 cut(s)	144, 336, 405, 524, 579
BmrI	ACTGGG	1 cut(s)	437
BmsI	GCATC	3 cut(s)	207, 469, 675
BmuI	ACTGGG	1 cut(s)	437
BpiI	GAAGAC	1 cut(s)	444
BplI	GAGNNNNNCTC	2 cut(s)	481, 513
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	142
Bse1I	ACTGG	3 cut(s)	208, 253, 443
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	5 cut(s)	144, 336, 405, 524, 579
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	5 cut(s)	80, 222, 463, 550, 666
BseJI	GATNNNNATC	1 cut(s)	396
BseMII	CTCAG	2 cut(s)	479, 512
BseNI	ACTGG	3 cut(s)	208, 253, 443
BseSI	GKGCMC	2 cut(s)	111, 654
BseXI	GCAGC	2 cut(s)	88, 739
BsgI	GTGCAG	1 cut(s)	585
BshNI	GGYRCC	2 cut(s)	146, 461
BsiHKAI	GWGCWC	2 cut(s)	626, 654
BslFI	GGGAC	2 cut(s)	259, 512
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	2 cut(s)	259, 512
Bsp1286I	GDGCHC	3 cut(s)	111, 626, 654
Bsp143I	GATC	3 cut(s)	385, 409, 640
BspACI	CCGC	2 cut(s)	123, 375
BspCNI	CTCAG	2 cut(s)	480, 511
BspLI	GGNNCC	3 cut(s)	148, 463, 528
BspMAI	CTGCAG	2 cut(s)	106, 757
BspMI	ACCTGC	1 cut(s)	557
BspPI	GGATC	1 cut(s)	380
BspT107I	GGYRCC	2 cut(s)	146, 461
BsrI	ACTGG	3 cut(s)	208, 253, 443
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	3 cut(s)	385, 409, 640
BssSI	CACGAG	1 cut(s)	262
Bst2BI	CACGAG	1 cut(s)	262
Bst2UI	CCWGG	5 cut(s)	144, 336, 405, 524, 579
Bst4CI	ACNGT	2 cut(s)	88, 740
Bst6I	CTCTTC	1 cut(s)	702
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	488, 498
BstF5I	GGATG	5 cut(s)	80, 222, 463, 550, 666
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	3 cut(s)	388, 412, 643
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	3 cut(s)	385, 409, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNI	CCWGG	5 cut(s)	144, 336, 405, 524, 579
BstNSI	RCATGY	2 cut(s)	123, 231
BstSCI	CCNGG	5 cut(s)	142, 334, 403, 522, 577
BstSFI	CTRYAG	2 cut(s)	102, 753
BstSLI	GKGCMC	2 cut(s)	111, 654
BstV1I	GCAGC	2 cut(s)	88, 739
BstV2I	GAAGAC	1 cut(s)	444
BtsCI	GGATG	5 cut(s)	80, 222, 463, 550, 666
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	3 cut(s)	206, 526, 559
Csp6I	GTAC	2 cut(s)	551, 570
CviAII	CATG	9 cut(s)	58, 120, 162, 187, 196, 228, 279, 331, 473
CviJI	RGCY	6 cut(s)	65, 101, 383, 403, 624, 752
CviKI_1	RGCY	6 cut(s)	65, 101, 383, 403, 624, 752
CviQI	GTAC	2 cut(s)	551, 570
DdeI	CTNAG	2 cut(s)	488, 498
DpnI	GATC	3 cut(s)	387, 411, 642
DpnII	GATC	3 cut(s)	385, 409, 640
Eam1104I	CTCTTC	1 cut(s)	702
EarI	CTCTTC	1 cut(s)	702
Ecl136II	GAGCTC	1 cut(s)	624
Eco24I	GRGCYC	1 cut(s)	626
Eco32I	GATATC	2 cut(s)	31, 328
Eco47I	GGWCC	3 cut(s)	206, 526, 559
Eco47III	AGCGCT	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	624
EcoICRI	GAGCTC	1 cut(s)	624
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRII	CCWGG	5 cut(s)	142, 334, 403, 522, 577
EcoRV	GATATC	2 cut(s)	31, 328
EcoT38I	GRGCYC	1 cut(s)	626
FaeI	CATG	9 cut(s)	61, 123, 165, 190, 199, 231, 282, 334, 476
FalI	AAGNNNNNCTT	4 cut(s)	578, 610, 610, 642
FaqI	GGGAC	2 cut(s)	259, 512
FatI	CATG	9 cut(s)	57, 119, 161, 186, 195, 227, 278, 330, 472
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	102, 753
FokI	GGATG	5 cut(s)	87, 229, 470, 557, 653
FriOI	GRGCYC	1 cut(s)	626
Fsp4HI	GCNGC	2 cut(s)	102, 753
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	2 cut(s)	102, 753
HaeII	RGCGCY	1 cut(s)	172
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	9 cut(s)	61, 123, 165, 190, 199, 231, 282, 334, 476
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	5 cut(s)	158, 275, 609, 676, 682
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	2 cut(s)	343, 652
Hpy188I	TCNGA	2 cut(s)	12, 681
Hpy188III	TCNNGA	5 cut(s)	26, 389, 487, 613, 765
Hpy8I	GTNNAC	2 cut(s)	343, 652
HpyAV	CCTTC	2 cut(s)	64, 580
HpyCH4III	ACNGT	2 cut(s)	88, 740
HpyCH4IV	ACGT	1 cut(s)	694
HpyCH4V	TGCA	6 cut(s)	104, 199, 220, 566, 652, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpyF3I	CTNAG	2 cut(s)	488, 498
HpySE526I	ACGT	1 cut(s)	694
Hsp92II	CATG	9 cut(s)	61, 123, 165, 190, 199, 231, 282, 334, 476
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	385, 409, 640
LmnI	GCTCC	3 cut(s)	380, 621, 758
Lsp1109I	GCAGC	2 cut(s)	88, 739
LweI	GCATC	3 cut(s)	207, 469, 675
MaeII	ACGT	1 cut(s)	694
MaeIII	GTNAC	2 cut(s)	88, 418
MalI	GATC	3 cut(s)	387, 411, 642
MboI	GATC	3 cut(s)	385, 409, 640
MboII	GAAGA	3 cut(s)	449, 613, 719
MhlI	GDGCHC	3 cut(s)	111, 626, 654
MluCI	AATT	5 cut(s)	13, 256, 299, 504, 698
MlyI	GAGTC	2 cut(s)	269, 676
MnlI	CCTC	3 cut(s)	506, 715, 742
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	4 cut(s)	426, 596, 657, 701
MslI	CAYNNNNRTG	2 cut(s)	477, 657
MspR9I	CCNGG	5 cut(s)	144, 336, 405, 524, 579
MvaI	CCWGG	5 cut(s)	144, 336, 405, 524, 579
MwoI	GCNNNNNNNGC	1 cut(s)	758
NdeII	GATC	3 cut(s)	385, 409, 640
NlaIII	CATG	9 cut(s)	61, 123, 165, 190, 199, 231, 282, 334, 476
NlaIV	GGNNCC	3 cut(s)	148, 463, 528
NmuCI	GTSAC	1 cut(s)	88
NspI	RCATGY	2 cut(s)	123, 231
PaeI	GCATGC	1 cut(s)	123
PciI	ACATGT	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	3 cut(s)	158, 609, 676
PkrI	GCNGC	2 cut(s)	103, 754
PleI	GAGTC	2 cut(s)	269, 676
PpsI	GAGTC	2 cut(s)	269, 676
PpuMI	RGGWCCY	1 cut(s)	526
PscI	ACATGT	1 cut(s)	227
PshBI	ATTAAT	1 cut(s)	701
Psp124BI	GAGCTC	1 cut(s)	626
Psp5II	RGGWCCY	1 cut(s)	526
Psp6I	CCWGG	5 cut(s)	142, 334, 403, 522, 577
PspGI	CCWGG	5 cut(s)	142, 334, 403, 522, 577
PspN4I	GGNNCC	3 cut(s)	148, 463, 528
PspPI	GGNCC	3 cut(s)	206, 526, 559
PspPPI	RGGWCCY	1 cut(s)	526
PstI	CTGCAG	2 cut(s)	106, 757
RsaI	GTAC	2 cut(s)	552, 571
RsaNI	GTAC	2 cut(s)	551, 570
RseI	CAYNNNNRTG	2 cut(s)	477, 657
SacI	GAGCTC	1 cut(s)	626
SaqAI	TTAA	4 cut(s)	426, 596, 657, 701
SatI	GCNGC	2 cut(s)	102, 753
Sau3AI	GATC	3 cut(s)	385, 409, 640
Sau96I	GGNCC	3 cut(s)	206, 526, 559
SchI	GAGTC	2 cut(s)	269, 676
ScrFI	CCNGG	5 cut(s)	144, 336, 405, 524, 579
SduI	GDGCHC	3 cut(s)	111, 626, 654
SfaNI	GCATC	3 cut(s)	207, 469, 675
SfcI	CTRYAG	2 cut(s)	102, 753
SinI	GGWCC	3 cut(s)	206, 526, 559
SmiMI	CAYNNNNRTG	2 cut(s)	477, 657
SphI	GCATGC	1 cut(s)	123
Sse9I	AATT	5 cut(s)	13, 256, 299, 504, 698
SsiI	CCGC	2 cut(s)	123, 375
SstI	GAGCTC	1 cut(s)	626
StyD4I	CCNGG	5 cut(s)	142, 334, 403, 522, 577
TaaI	ACNGT	2 cut(s)	88, 740
TaiI	ACGT	1 cut(s)	697
TaqI	TCGA	1 cut(s)	705
TasI	AATT	5 cut(s)	13, 256, 299, 504, 698
TatI	WGTACW	1 cut(s)	550
TfiI	GAWTC	3 cut(s)	158, 609, 676
Tru1I	TTAA	4 cut(s)	426, 596, 657, 701
Tru9I	TTAA	4 cut(s)	426, 596, 657, 701
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	2 cut(s)	101, 752
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	5 cut(s)	46, 184, 323, 366, 461
TspGWI	ACGGA	2 cut(s)	440, 551
TspRI	CASTG	1 cut(s)	111
VneI	GTGCAC	1 cut(s)	650
VpaK11BI	GGWCC	3 cut(s)	206, 526, 559
VspI	ATTAAT	1 cut(s)	701
XapI	RAATTY	2 cut(s)	13, 299
XceI	RCATGY	2 cut(s)	123, 231
XmiI	GTMKAC	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.