FvH4_2g18630

Chaperone protein DNAj

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
15947719 .. 15950491
2773 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18630.t2

Sequence Viewer

Length: 1329 bp
ATGGTTGGCTCCAATGGCGTCAGGATCGTCCGCTCCCTCGCTCGTCGCTCTCTCTCCTCCTCCTCCAAAACCCTCCAAAACCCTAAACCTTCCTCCTCCGTATACACCAGACTCCATGCCCCTGGTGCTTATAGAACCTTCCACTCTGGACTTTGCAGCAATCACAGGGTTTTAGGAAATCATAATGCTTGTAGTAAGAATTGGTTTCTTGGAGGTGTGCATGCTAATTGGACCACAGTGAAGTCGATTCATGGAACTGCATCAGTGGCTGCTTGCGATTACTATGACACACTTGGTGTAAGCAAGACTGCAAGTGTGTCAGAGATAAAGAAAGCCTATTATGGCCTGGCAAAGAAGCTCCATCCAGACACAAATAAAGACGATCCTGATGCTGAAAAGAAGTTTCAAGAAATTCAGAAGGCTTATGAAGTTTTGAAAGACGAGGAGAAGCGTAGAGAGTATGATGAGTACGGCCATGATGGATTTGAACAGAGAGGCAATGGCAACGGCTTTCCTGGTGGTTTCGGCAATCCGTTTGAAGACTTGTTTGGCCGACGGGGTGGTGGACAGGATGTAAATGTAGTTTTGGAGATATCCTTTATGGAAGCTGTTAAGGGATGTGCTAAAACTCTGCAATTTAGAGCTGCAGTTTCCTGTGAAGCTTGTGGTGGAACTGGTGCTCCTCCTGGCACCAAACTTGAATCATGTAAGGGCTGTGGGGGGTTAGGTATGACATCCATGCAAACTGCCCTTGGTTGGATGCATATGCATTGTCCTCAGTGTAAAGGGACTGGCAAAACTTTCCCGATATTGTGCAACTCTTGCAATGGGAAGCGTGTCTTAAATGGAAGCAAGACAGTAAAGTTAGATATAATGGCAGGAATAGACAACAATGATATCATGCGGGTGTTCAGTAACGGTGGAGCTGATCCTGATGGTAATCAACCTGGTGATCTATATGTTACCATTAAGGTTAGGGAAGACCCAGTTTTCCGGAGACAAGGTGCCGACATTCATGTAGATTCCGTTCTGAGTATCTCTCAGGCAATATTGGGAGGAACTATAAAGGTGCCCACTCTCACTGGAGATGTACTCCTAAAGGTCAGCCCTGCCACACAACCTGGTCAAAAGGTAGTCCTGAAGAACAAGGGGATCAAGACAAGGAACTCTTATTCATTGGGTGATCAATATGTGCACTTCAATGTCAGCATCCCAACAAGTCTGTCTCAAAGACAACGTGAAATAATCCAAGAATTTTCCAAAGAAGCTTCTTCTAAAGAAGAACAGGAGGAGGTACACGGTAAGCGTGCTGCTACAGGGGCATCTTGA

Protein Analysis

443

Amino Acids

47.78

Weight (kDa)

9.05

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 91 - 153 2.3e-27 DnaJ domain
DnaJ_C PF01556 191 - 403 1.2e-40 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 217 - 276 7.1e-10 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 689, 1004, 1069
AccBSI CCGCTC 1 cut(s) 33
AccI GTMKAC 1 cut(s) 102
AccIII TCCGGA 1 cut(s) 993
AciI CCGC 2 cut(s) 31, 904
AclWI GGATC 4 cut(s) 32, 377, 923, 1160
AcoI YGGCCR 2 cut(s) 472, 550
AcsI RAATTY 2 cut(s) 411, 1253
AcuI CTGAAG 1 cut(s) 1160
AcyI GRCGYC 1 cut(s) 18
AdeI CACNNNGTG 1 cut(s) 296
AfaI GTAC 3 cut(s) 470, 1092, 1296
AfiI CCNNNNNNNGG 1 cut(s) 756
AgsI TTSAA 6 cut(s) 407, 436, 488, 539, 701, 1201
AjnI CCWGG 6 cut(s) 121, 345, 514, 685, 946, 1120
AjuI GAANNNNNNNTTGG 2 cut(s) 531, 563
AloI GAACNNNNNNTCC 2 cut(s) 664, 696
AluBI AGCT 6 cut(s) 358, 608, 644, 662, 926, 1268
AluI AGCT 6 cut(s) 358, 608, 644, 662, 926, 1268
Alw21I GWGCWC 2 cut(s) 682, 1197
Alw26I GTCTC 2 cut(s) 991, 1230
Alw44I GTGCAC 1 cut(s) 1193
AlwI GGATC 4 cut(s) 32, 377, 923, 1160
AlwNI CAGNNNCTG 1 cut(s) 269
Aor13HI TCCGGA 1 cut(s) 993
AoxI GGCC 3 cut(s) 343, 472, 550
ApaLI GTGCAC 1 cut(s) 1193
ApeKI GCWGC 4 cut(s) 156, 269, 644, 1310
ApoI RAATTY 2 cut(s) 411, 1253
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 962, 1193
AvaII GGWCC 1 cut(s) 231
BaeGI GKGCMC 2 cut(s) 1074, 1197
BanI GGYRCC 3 cut(s) 689, 1004, 1069
BbsI GAAGAC 2 cut(s) 546, 987
Bbv12I GWGCWC 2 cut(s) 682, 1197
BbvI GCAGC 4 cut(s) 168, 256, 631, 1297
BccI CCATC 3 cut(s) 369, 473, 929
BceAI ACGGC 2 cut(s) 487, 523
BcgI CGANNNNNNTGC 2 cut(s) 371, 405
BciT130I CCWGG 6 cut(s) 123, 347, 516, 687, 948, 1122
BclI TGATCA 1 cut(s) 1183
BcoDI GTCTC 2 cut(s) 991, 1230
BfmI CTRYAG 2 cut(s) 645, 1314
BisI GCNGC 4 cut(s) 157, 270, 645, 1311
BlsI GCNGC 4 cut(s) 158, 271, 646, 1312
Bme1390I CCNGG 6 cut(s) 123, 347, 516, 687, 948, 1122
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 4 cut(s) 10, 691, 1006, 1071
BmrFI CCNGG 6 cut(s) 123, 347, 516, 687, 948, 1122
BmrI ACTGGG 1 cut(s) 980
BmsI GCATC 4 cut(s) 269, 379, 750, 1218
BmuI ACTGGG 1 cut(s) 980
BpiI GAAGAC 2 cut(s) 546, 987
BplI GAGNNNNNCTC 4 cut(s) 1024, 1056, 1077, 1109
BpmI CTGGAG 1 cut(s) 1104
BsaBI GATNNNNATC 1 cut(s) 939
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 2 cut(s) 121, 751
BsaWI WCCGGW 1 cut(s) 993
BsaXI ACNNNNNCTCC 4 cut(s) 664, 694, 988, 1018
Bsc4I CCNNNNNNNGG 1 cut(s) 756
Bse1I ACTGG 4 cut(s) 679, 796, 986, 1087
Bse3DI GCAATG 2 cut(s) 505, 832
Bse8I GATNNNNATC 1 cut(s) 939
BseAI TCCGGA 1 cut(s) 993
BseBI CCWGG 6 cut(s) 123, 347, 516, 687, 948, 1122
BseDI CCNNGG 2 cut(s) 121, 751
BseGI GGATG 6 cut(s) 361, 577, 623, 734, 765, 1209
BseJI GATNNNNATC 1 cut(s) 939
BseLI CCNNNNNNNGG 1 cut(s) 756
BseMI GCAATG 2 cut(s) 505, 832
BseMII CTCAG 3 cut(s) 791, 1022, 1055
BseNI ACTGG 4 cut(s) 679, 796, 986, 1087
BseRI GAGGAG 7 cut(s) 46, 49, 52, 85, 458, 672, 1304
BseSI GKGCMC 2 cut(s) 1074, 1197
BseXI GCAGC 4 cut(s) 168, 256, 631, 1297
BshFI GGCC 3 cut(s) 345, 474, 552
BshNI GGYRCC 3 cut(s) 689, 1004, 1069
BsiHKAI GWGCWC 2 cut(s) 682, 1197
BsiSI CCGG 1 cut(s) 994
BslFI GGGAC 1 cut(s) 802
BslI CCNNNNNNNGG 1 cut(s) 756
BsmAI GTCTC 2 cut(s) 991, 1230
BsmFI GGGAC 1 cut(s) 802
BsnI GGCC 3 cut(s) 345, 474, 552
Bsp1286I GDGCHC 3 cut(s) 682, 1074, 1197
Bsp13I TCCGGA 1 cut(s) 993
Bsp143I GATC 6 cut(s) 24, 382, 928, 952, 1152, 1183
BspACI CCGC 2 cut(s) 31, 904
BspANI GGCC 3 cut(s) 345, 474, 552
BspCNI CTCAG 3 cut(s) 790, 1023, 1054
BspEI TCCGGA 1 cut(s) 993
BspLI GGNNCC 4 cut(s) 10, 691, 1006, 1071
BspMAI CTGCAG 1 cut(s) 649
BspPI GGATC 4 cut(s) 32, 377, 923, 1160
BspT107I GGYRCC 3 cut(s) 689, 1004, 1069
BsrBI CCGCTC 1 cut(s) 33
BsrDI GCAATG 2 cut(s) 505, 832
BsrI ACTGG 4 cut(s) 679, 796, 986, 1087
BssECI CCNNGG 2 cut(s) 121, 751
BssMI GATC 6 cut(s) 24, 382, 928, 952, 1152, 1183
BssNAI GTATAC 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 751
Bst1107I GTATAC 1 cut(s) 103
Bst2UI CCWGG 6 cut(s) 123, 347, 516, 687, 948, 1122
Bst4CI ACNGT 4 cut(s) 238, 859, 920, 1301
BstACI GRCGYC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 822
BstC8I GCNNGC 3 cut(s) 222, 274, 1308
BstDEI CTNAG 3 cut(s) 777, 1031, 1041
BstF5I GGATG 6 cut(s) 361, 577, 623, 734, 765, 1209
BstKTI GATC 6 cut(s) 27, 385, 931, 955, 1155, 1186
BstMAI GTCTC 2 cut(s) 991, 1230
BstMBI GATC 6 cut(s) 24, 382, 928, 952, 1152, 1183
BstMWI GCNNNNNNNGC 5 cut(s) 15, 125, 266, 822, 1319
BstNI CCWGG 6 cut(s) 123, 347, 516, 687, 948, 1122
BstNSI RCATGY 1 cut(s) 224
BstSCI CCNGG 6 cut(s) 121, 345, 514, 685, 946, 1120
BstSFI CTRYAG 2 cut(s) 645, 1314
BstSLI GKGCMC 2 cut(s) 1074, 1197
BstV1I GCAGC 4 cut(s) 168, 256, 631, 1297
BstV2I GAAGAC 2 cut(s) 546, 987
BstXI CCANNNNNNTGG 1 cut(s) 122
BstZ17I GTATAC 1 cut(s) 103
BsuRI GGCC 3 cut(s) 345, 474, 552
BtsCI GGATG 6 cut(s) 361, 577, 623, 734, 765, 1209
BtsIMutI CAGTG 4 cut(s) 243, 270, 785, 1080
Cac8I GCNNGC 3 cut(s) 222, 274, 1308
CaiI CAGNNNCTG 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 231
CseI GACGC 1 cut(s) 7
CsiI ACCWGGT 2 cut(s) 946, 1120
Csp6I GTAC 3 cut(s) 469, 1091, 1295
CviAII CATG 8 cut(s) 116, 221, 251, 476, 705, 739, 901, 1016
CviQI GTAC 3 cut(s) 469, 1091, 1295
DdeI CTNAG 3 cut(s) 777, 1031, 1041
DpnI GATC 6 cut(s) 26, 384, 930, 954, 1154, 1185
DpnII GATC 6 cut(s) 24, 382, 928, 952, 1152, 1183
DraIII CACNNNGTG 1 cut(s) 296
EaeI YGGCCR 2 cut(s) 472, 550
Eco130I CCWWGG 1 cut(s) 751
Eco32I GATATC 2 cut(s) 594, 898
Eco47I GGWCC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 1160
EcoRII CCWGG 6 cut(s) 121, 345, 514, 685, 946, 1120
EcoRV GATATC 2 cut(s) 594, 898
EcoT14I CCWWGG 1 cut(s) 751
EcoT22I ATGCAT 2 cut(s) 765, 771
ErhI CCWWGG 1 cut(s) 751
FaeI CATG 8 cut(s) 119, 224, 254, 479, 708, 742, 904, 1019
FalI AAGNNNNNCTT 4 cut(s) 824, 856, 1153, 1185
FaqI GGGAC 1 cut(s) 802
FatI CATG 8 cut(s) 115, 220, 250, 475, 704, 738, 900, 1015
FauI CCCGC 1 cut(s) 897
FauNDI CATATG 1 cut(s) 765
FbaI TGATCA 1 cut(s) 1183
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 4 cut(s) 157, 270, 645, 1311
FokI GGATG 6 cut(s) 348, 584, 630, 721, 772, 1196
Fsp4HI GCNGC 4 cut(s) 157, 270, 645, 1311
GluI GCNGC 4 cut(s) 157, 270, 645, 1311
GsuI CTGGAG 1 cut(s) 1104
HaeIII GGCC 3 cut(s) 345, 474, 552
HapII CCGG 1 cut(s) 994
HgaI GACGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 8 cut(s) 119, 224, 254, 479, 708, 742, 904, 1019
HindIII AAGCTT 2 cut(s) 660, 1266
HinfI GANTC 4 cut(s) 111, 247, 701, 1022
HpaII CCGG 1 cut(s) 994
HphI GGTGA 2 cut(s) 962, 1193
Hpy166II GTNNAC 4 cut(s) 103, 566, 1195, 1297
Hpy188I TCNGA 3 cut(s) 322, 417, 1032
Hpy8I GTNNAC 4 cut(s) 103, 566, 1195, 1297
Hpy99I CGWCG 2 cut(s) 48, 558
HpyAV CCTTC 3 cut(s) 99, 148, 412
HpyCH4III ACNGT 4 cut(s) 238, 859, 920, 1301
HpyCH4IV ACGT 1 cut(s) 1237
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 125, 266, 822, 1319
HpyF3I CTNAG 3 cut(s) 777, 1031, 1041
HpySE526I ACGT 1 cut(s) 1237
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 8 cut(s) 119, 224, 254, 479, 708, 742, 904, 1019
Kpn2I TCCGGA 1 cut(s) 993
Ksp22I TGATCA 1 cut(s) 1183
Kzo9I GATC 6 cut(s) 24, 382, 928, 952, 1152, 1183
LmnI GCTCC 5 cut(s) 14, 38, 363, 685, 923
Lsp1109I GCAGC 4 cut(s) 168, 256, 631, 1297
LweI GCATC 4 cut(s) 269, 379, 750, 1218
MabI ACCWGGT 2 cut(s) 946, 1120
MaeII ACGT 1 cut(s) 1237
MaeIII GTNAC 2 cut(s) 914, 961
MalI GATC 6 cut(s) 26, 384, 930, 954, 1154, 1185
MbiI CCGCTC 1 cut(s) 33
MboI GATC 6 cut(s) 24, 382, 928, 952, 1152, 1183
MboII GAAGA 5 cut(s) 551, 992, 1153, 1263, 1292
MhlI GDGCHC 3 cut(s) 682, 1074, 1197
MluCI AATT 5 cut(s) 199, 226, 411, 635, 1253
MlyI GAGTC 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 737
Mph1103I ATGCAT 2 cut(s) 765, 771
MroI TCCGGA 1 cut(s) 993
MseI TTAA 3 cut(s) 612, 842, 969
MslI CAYNNNNRTG 2 cut(s) 905, 1200
MspI CCGG 1 cut(s) 994
MspR9I CCNGG 6 cut(s) 123, 347, 516, 687, 948, 1122
MvaI CCWGG 6 cut(s) 123, 347, 516, 687, 948, 1122
MwoI GCNNNNNNNGC 5 cut(s) 15, 125, 266, 822, 1319
NdeI CATATG 1 cut(s) 765
NdeII GATC 6 cut(s) 24, 382, 928, 952, 1152, 1183
NlaIII CATG 8 cut(s) 119, 224, 254, 479, 708, 742, 904, 1019
NlaIV GGNNCC 4 cut(s) 10, 691, 1006, 1071
NsiI ATGCAT 2 cut(s) 765, 771
NspI RCATGY 1 cut(s) 224
PaeI GCATGC 1 cut(s) 224
PfeI GAWTC 3 cut(s) 247, 701, 1022
PkrI GCNGC 4 cut(s) 158, 271, 646, 1312
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
Psp6I CCWGG 6 cut(s) 121, 345, 514, 685, 946, 1120
PspGI CCWGG 6 cut(s) 121, 345, 514, 685, 946, 1120
PspN4I GGNNCC 4 cut(s) 10, 691, 1006, 1071
PspPI GGNCC 1 cut(s) 231
PsrI GAACNNNNNNTAC 2 cut(s) 1011, 1043
PstI CTGCAG 1 cut(s) 649
PstNI CAGNNNCTG 1 cut(s) 269
RsaI GTAC 3 cut(s) 470, 1092, 1296
RsaNI GTAC 3 cut(s) 469, 1091, 1295
RseI CAYNNNNRTG 2 cut(s) 905, 1200
SaqAI TTAA 3 cut(s) 612, 842, 969
SatI GCNGC 4 cut(s) 157, 270, 645, 1311
Sau3AI GATC 6 cut(s) 24, 382, 928, 952, 1152, 1183
Sau96I GGNCC 1 cut(s) 231
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 6 cut(s) 123, 347, 516, 687, 948, 1122
SduI GDGCHC 3 cut(s) 682, 1074, 1197
SexAI ACCWGGT 2 cut(s) 946, 1120
SfaNI GCATC 4 cut(s) 269, 379, 750, 1218
SfcI CTRYAG 2 cut(s) 645, 1314
SinI GGWCC 1 cut(s) 231
SmiMI CAYNNNNRTG 2 cut(s) 905, 1200
SphI GCATGC 1 cut(s) 224
Sse9I AATT 5 cut(s) 199, 226, 411, 635, 1253
SsiI CCGC 2 cut(s) 31, 904
SspI AATATT 1 cut(s) 1050
StyD4I CCNGG 6 cut(s) 121, 345, 514, 685, 946, 1120
StyI CCWWGG 1 cut(s) 751
TaaI ACNGT 4 cut(s) 238, 859, 920, 1301
TaiI ACGT 1 cut(s) 1240
TaqI TCGA 1 cut(s) 245
TasI AATT 5 cut(s) 199, 226, 411, 635, 1253
TatI WGTACW 1 cut(s) 1090
TfiI GAWTC 3 cut(s) 247, 701, 1022
Tru1I TTAA 3 cut(s) 612, 842, 969
Tru9I TTAA 3 cut(s) 612, 842, 969
TscAI CASTG 4 cut(s) 243, 270, 785, 1087
TseI GCWGC 4 cut(s) 156, 269, 644, 1310
TspDTI ATGAA 4 cut(s) 239, 441, 1004, 1164
TspGWI ACGGA 3 cut(s) 88, 522, 1015
TspRI CASTG 4 cut(s) 243, 270, 785, 1087
VneI GTGCAC 1 cut(s) 1193
VpaK11BI GGWCC 1 cut(s) 231
XapI RAATTY 2 cut(s) 411, 1253
XceI RCATGY 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 102
Zsp2I ATGCAT 2 cut(s) 765, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.