Rorug06G0161800

Cell division control protein 45 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004458
Physical Location & Seq
Reverse (-)
23129817 .. 23140379
10563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0161800.1

Sequence Viewer

Length: 2460 bp
ATGTTGGAGTCAGTGACTTGTTTTGGAAGCTATAAGGGATACGACATTATCAAACAAAAGAGCCCGTTTATGGCTTGCTCCATAGGCACATCACGGTTCTGTGGGCATTCTTTCAGTCCTTATGTTAGTAACCAGCAAGTGCGCTCGTTATCATATGCTAATAAGTACAAGATAAGACATAGTCCTTTTGTTTCAAGAAATTTCAGTCAAGGCAATTCTTCGTTAACTTCCTCTGTACACTGCTGGCGAGGATTTTATTTCTCAAACCATAGACCAGGCCACTCAGCAAGATGGAGGATATATGCAACACTTGATGTTGCCAGCGCTGTTGATGTCATCAATGATTTAGGATTTGATACTTTGACGTTCTTAGCTGTGACTGTTCTGGTTGTTCCTGCATTCAAGATCATCAAAGCTAGCCCTATACTCGGTTTCTTCTTTGCGGGGATTGTACTCAATCAGTTTGGCTTGATTCGGAATCTTACAGATGTGAAAATTTTATCAGAATGGGGGATTCTTTTTTTGCTATTTGAGATGGGATTAGAGCTTTCATTTTCACGTCTAAAGGCTCTTGCAAAATTTGCCTTCGGCATGGGACTAACTCAGGTCGTATTATCTACTCTTGCTTTCACAGCATTTGAACTTCCTCCTAATGGGGCTATTGGAACACAAATTTTGACGTTCCTCTTTAACTCAAGGCCTGATCTGGTCAATATCAGAAGCGTTGATGAAGCAGTAGTGATTGGTGCTGCTCTATCTTTATCTTCCTCAGCTTTTGTACTGCAGCTACTTGCAGAGAAAGGTGAACTCCCTACAAGATTTGGCTCTGCAACTCTTGGGATACTTCTTTTACAGGATATAGCAGTCGTACCTCTCTTAGTCATACTTCCGGTGCTGGAAAGCCAGAACATAGCGGAGGACAGTATATGGCCAATGCTTTTGAAGGAGAGTTTAAAAGCTCTAGGTGGGCTGGGGCTTCTTTCTCTTGGAGGAAAATTAGTTCTTAGGCGAATTTTTGAGTTTGTAGCAGAAGCAAGGAGCTCAGAGGCATTTGTTGCCCTTTGCTTACTGACAGTGGCTGGGACTTCACTTGTCACCCAGAAGTTGGGGTTCAGTGATACGCTTGGAGCATTTTTGGCTGGAGCACTGCTAGCAGAAACAAATTTCCGGACACAAATTGAAGCCGATATAAGGCCATTTAGAGGCTTACTTCTGGGGTTATTTTTTGTAACTACAGGGACGTCCATTGACACGCAGCTTCTTTTTCGAGAGTGGCCGAATGTGCTTTCACTCTTGGCAGGTTTGATTGTCATCAAGACGCTGATAATAACAGCGATAGGCCCTCGTGTTGGACTCACTTTACAAGAAAGTGTAAGAATAGGATTGCTTTTGTCTCAAGGAGGGGAGTTTGGCTTTGTAGTTTTTTCTCTTGCAAACAGGCTTGGTGTGCTACCACTTGAGCTTAACAAGTTGCTCATAATTGTTGTTGTCCTGTCAATGGCATTAACCCCATTGCTTAATGAAGCTGGAAGAAGAGCTGCTGCATATATTGATGACAATTTTGAAGCAGAGGATAAAGTTCCTGATGTGGTGAATTTCAATTCAAGTGAACCTGTTGTTATTCTTGGATTTGGACAAATGGGCCAGGTCCTTGCCAATTTCTTGTCCACTCCATTGGCTTCAGGAATAGATGGAGATGCTCTGGGATGGCCCTATGTAGCTTTTGATCTTGATCCATCTATCGTGAAGGGGTCTAGAAAGCTCGGCTTTCCAATTCTTTACGGGGATGGATCACGTCCTGATGTTTTGCAATCTGCTGGTATATCTCTCCCAAAAGCTGTCTTGGTTATGTACACTGCAAGGGAGAAAACAATTGATGCCGTTCAAAGGCTTCGACTTGCTTTCCCTTCAATCCCTATTTATGCCAGAGCTCTGGACCTGAAGCACCTTTTAGATCTGAAAAAAGCAGGTGCAACAGATGCCATTATGGAAAGTGCAGAGACAAGTTTGCAGTTGGGCTCTAAGCTTTTGAAAGGGTTCGGTGTTATGTCTGATGATGTGAACTTTCTTCGTCAAATTGTTCGTGATTCCATGGAGCTGCAAGCTCAAGAAGTAGTCGGGAAAACTGATGATCAAGACTTGAATAATTTGAAGTCATTGCAGGTGAGAGTTGCTGACTTAATTGATGACCCCTCATCCATTTCATCAACTTCATCGGAAGACAATTCATGGGAGGTAAACAAGGTGGGTGCTTCTTATATCTCGACGTTGCAGGGAGATGTAGCTGAAGCAGAGCATGACAGTGAACTCCAACGGTCTGGGCATGCGGAAGGGGAAGAAGTTTCACATGGCAACTTAGACACAAAGAATGGGTATCGAGTTAAACCGCAAGATGTTGAGGGGGAGATAAATACAGTAGACCCATCAGCCCCCTGTGTAACGACTAAGGACGAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000727 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003688 GO:0003690 GO:0003697 GO:0003824 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005656 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006267 GO:0006270 GO:0006275 GO:0006281 GO:0006302 GO:0006310 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0023052 GO:0031261 GO:0031298 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031570 GO:0031573 GO:0031935 GO:0031938 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0033260 GO:0033262 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0035556 GO:0036387 GO:0036388 GO:0042770 GO:0043138 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044773 GO:0044774 GO:0044786 GO:0045786 GO:0045787 GO:0045930 GO:0045931 GO:0045934 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071163 GO:0071704 GO:0071824 GO:0071840 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072428 GO:0080090 GO:0090068 GO:0090304 GO:0090329 GO:0097159 GO:0140097 GO:1900087 GO:1901360 GO:1901363 GO:1901576 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902275 GO:1902292 GO:1902299 GO:1902315 GO:1902402 GO:1902403 GO:1902576 GO:1902806 GO:1902808 GO:1902969 GO:1902975 GO:1902977 GO:1903047 GO:1903463 GO:1903464 GO:1903506 GO:1990837 GO:2000045 GO:2000104 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 map04110 map04111 map04113
Pfam Domains
Protein Families
CDC45

Protein Analysis

819

Amino Acids

88.78

Weight (kDa)

5.34

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 126 - 507 3.7e-67 Sodium/hydrogen exchanger, transmembrane
TrkA_N PF02254 539 - 663 3.2e-15 TrkA-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1958, 2152
AatII GACGTC 1 cut(s) 1244
Acc36I ACCTGC 3 cut(s) 1289, 1958, 2152
AccB7I CCANNNNNTGG 1 cut(s) 1105
AccI GTMKAC 1 cut(s) 2418
AccIII TCCGGA 1 cut(s) 1167
AciI CCGC 4 cut(s) 443, 914, 2327, 2387
AclWI GGATC 2 cut(s) 1727, 1798
AcoI YGGCCR 2 cut(s) 929, 1274
AcsI RAATTY 7 cut(s) 199, 495, 578, 672, 1011, 1162, 1594
AcuI CTGAAG 3 cut(s) 1665, 1961, 2307
AcyI GRCGYC 1 cut(s) 1241
AfaI GTAC 6 cut(s) 167, 237, 453, 780, 870, 1853
AfeI AGCGCT 1 cut(s) 325
AfiI CCNNNNNNNGG 9 cut(s) 70, 428, 653, 1105, 1191, 1202, 1349, 1498, 1887
AjiI CACGTC 2 cut(s) 560, 1796
AjnI CCWGG 2 cut(s) 274, 1644
AloI GAACNNNNNNTCC 2 cut(s) 984, 1016
Alw21I GWGCWC 3 cut(s) 1043, 1147, 1933
Alw26I GTCTC 2 cut(s) 1398, 1994
AlwI GGATC 2 cut(s) 1727, 1798
AlwNI CAGNNNCTG 1 cut(s) 1079
Aor13HI TCCGGA 1 cut(s) 1167
Aor51HI AGCGCT 1 cut(s) 325
AoxI GGCC 8 cut(s) 277, 698, 929, 1193, 1274, 1339, 1642, 1709
ApeKI GCWGC 6 cut(s) 749, 784, 1255, 1538, 1541, 2098
ApoI RAATTY 7 cut(s) 199, 495, 578, 672, 1011, 1162, 1594
Asp700I GAANNNNTTC 1 cut(s) 2036
AspLEI GCGC 2 cut(s) 144, 326
AspS9I GGNCC 5 cut(s) 1340, 1642, 1648, 1710, 1936
AsuHPI GGTGA 4 cut(s) 815, 1087, 1603, 2176
AsuNHI GCTAGC 2 cut(s) 416, 1150
AvaII GGWCC 2 cut(s) 1648, 1936
BalI TGGCCA 1 cut(s) 931
BanII GRGCYC 4 cut(s) 65, 1043, 1933, 2021
BauI CACGAG 1 cut(s) 1344
BbsI GAAGAC 1 cut(s) 2226
Bbv12I GWGCWC 3 cut(s) 1043, 1147, 1933
BbvCI CCTCAGC 1 cut(s) 769
BbvI GCAGC 6 cut(s) 736, 796, 1267, 1525, 1528, 2085
BccI CCATC 7 cut(s) 285, 529, 1685, 1701, 1744, 1781, 2431
BceAI ACGGC 1 cut(s) 1865
BciT130I CCWGG 2 cut(s) 276, 1646
BciVI GTATCC 2 cut(s) 32, 834
BclI TGATCA 1 cut(s) 2131
BcoDI GTCTC 2 cut(s) 1398, 1994
BfaI CTAG 4 cut(s) 417, 962, 1151, 1755
BfmI CTRYAG 2 cut(s) 782, 1233
BfoI RGCGCY 1 cut(s) 327
BfuAI ACCTGC 3 cut(s) 1289, 1958, 2152
BfuI GTATCC 2 cut(s) 32, 834
BglII AGATCT 1 cut(s) 1954
BisI GCNGC 6 cut(s) 750, 785, 1256, 1539, 1542, 2099
BlsI GCNGC 6 cut(s) 751, 786, 1257, 1540, 1543, 2100
Bme1390I CCNGG 2 cut(s) 276, 1646
Bme18I GGWCC 2 cut(s) 1648, 1936
BmgBI CACGTC 2 cut(s) 560, 1796
BmgT120I GGNCC 5 cut(s) 1340, 1642, 1648, 1710, 1936
BmrFI CCNGG 2 cut(s) 276, 1646
BmsI GCATC 3 cut(s) 1687, 1867, 1969
BmtI GCTAGC 2 cut(s) 420, 1154
BpiI GAAGAC 1 cut(s) 2226
BpmI CTGGAG 1 cut(s) 1161
Bpu10I CCTNAGC 1 cut(s) 769
BpuEI CTTGAG 4 cut(s) 679, 1380, 1478, 2091
BsaBI GATNNNNATC 2 cut(s) 1310, 1731
BsaHI GRCGYC 1 cut(s) 1241
BsaJI CCNNGG 1 cut(s) 2091
BsaWI WCCGGW 2 cut(s) 889, 1167
Bsc4I CCNNNNNNNGG 9 cut(s) 70, 428, 653, 1105, 1191, 1202, 1349, 1498, 1887
Bse3DI GCAATG 2 cut(s) 1511, 2156
Bse8I GATNNNNATC 2 cut(s) 1310, 1731
BseAI TCCGGA 1 cut(s) 1167
BseBI CCWGG 2 cut(s) 276, 1646
BseDI CCNNGG 1 cut(s) 2091
BseGI GGATG 3 cut(s) 1712, 1792, 2195
BseJI GATNNNNATC 2 cut(s) 1310, 1731
BseLI CCNNNNNNNGG 9 cut(s) 70, 428, 653, 1105, 1191, 1202, 1349, 1498, 1887
BseMI GCAATG 2 cut(s) 1511, 2156
BseMII CTCAG 4 cut(s) 297, 617, 783, 1056
BseXI GCAGC 6 cut(s) 736, 796, 1267, 1525, 1528, 2085
BseYI CCCAGC 2 cut(s) 970, 1079
BsgI GTGCAG 1 cut(s) 2016
BshFI GGCC 8 cut(s) 279, 700, 931, 1195, 1276, 1341, 1644, 1711
BsiHKAI GWGCWC 3 cut(s) 1043, 1147, 1933
BsiSI CCGG 2 cut(s) 890, 1168
BslFI GGGAC 3 cut(s) 609, 1096, 1252
BslI CCNNNNNNNGG 9 cut(s) 70, 428, 653, 1105, 1191, 1202, 1349, 1498, 1887
BsmAI GTCTC 2 cut(s) 1398, 1994
BsmFI GGGAC 3 cut(s) 609, 1096, 1252
BsmI GAATGC 2 cut(s) 106, 398
BsnI GGCC 8 cut(s) 279, 700, 931, 1195, 1276, 1341, 1644, 1711
Bsp1286I GDGCHC 5 cut(s) 65, 1043, 1147, 1933, 2021
Bsp13I TCCGGA 1 cut(s) 1167
Bsp1407I TGTACA 2 cut(s) 235, 1851
Bsp143I GATC 7 cut(s) 405, 703, 1726, 1732, 1790, 1954, 2131
Bsp19I CCATGG 1 cut(s) 2091
BspACI CCGC 4 cut(s) 443, 914, 2327, 2387
BspANI GGCC 8 cut(s) 279, 700, 931, 1195, 1276, 1341, 1644, 1711
BspCNI CTCAG 4 cut(s) 296, 616, 782, 1055
BspEI TCCGGA 1 cut(s) 1167
BspMAI CTGCAG 1 cut(s) 786
BspMI ACCTGC 3 cut(s) 1289, 1958, 2152
BspOI GCTAGC 2 cut(s) 420, 1154
BspPI GGATC 2 cut(s) 1727, 1798
BspQI GCTCTTC 1 cut(s) 1528
BsrDI GCAATG 2 cut(s) 1511, 2156
BsrGI TGTACA 2 cut(s) 235, 1851
BssECI CCNNGG 1 cut(s) 2091
BssMI GATC 7 cut(s) 405, 703, 1726, 1732, 1790, 1954, 2131
BssNI GRCGYC 1 cut(s) 1241
BssSI CACGAG 1 cut(s) 1344
BssT1I CCWWGG 1 cut(s) 2091
Bst2BI CACGAG 1 cut(s) 1344
Bst2UI CCWGG 2 cut(s) 276, 1646
Bst4CI ACNGT 8 cut(s) 96, 382, 923, 1075, 2303, 2316, 2416, 2457
Bst6I CTCTTC 1 cut(s) 1528
BstACI GRCGYC 1 cut(s) 1241
BstAPI GCANNNNNTGC 3 cut(s) 581, 1055, 1979
BstAUI TGTACA 2 cut(s) 235, 1851
BstC8I GCNNGC 7 cut(s) 76, 245, 322, 418, 1152, 2103, 2325
BstDSI CCRYGG 1 cut(s) 2091
BstF5I GGATG 3 cut(s) 1712, 1792, 2195
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 2 cut(s) 144, 326
BstKTI GATC 7 cut(s) 408, 706, 1729, 1735, 1793, 1957, 2134
BstMAI GTCTC 2 cut(s) 1398, 1994
BstMBI GATC 7 cut(s) 405, 703, 1726, 1732, 1790, 1954, 2131
BstMWI GCNNNNNNNGC 9 cut(s) 84, 581, 632, 1055, 1136, 1151, 1282, 1447, 1979
BstNI CCWGG 2 cut(s) 276, 1646
BstNSI RCATGY 1 cut(s) 2327
BstSCI CCNGG 2 cut(s) 274, 1644
BstSFI CTRYAG 2 cut(s) 782, 1233
BstV1I GCAGC 6 cut(s) 736, 796, 1267, 1525, 1528, 2085
BstV2I GAAGAC 1 cut(s) 2226
BstX2I RGATCY 1 cut(s) 1954
BstXI CCANNNNNNTGG 3 cut(s) 1675, 1933, 2318
BstYI RGATCY 1 cut(s) 1954
BsuI GTATCC 2 cut(s) 32, 834
BsuRI GGCC 8 cut(s) 279, 700, 931, 1195, 1276, 1341, 1644, 1711
BtgI CCRYGG 1 cut(s) 2091
BtrI CACGTC 2 cut(s) 560, 1796
BtsCI GGATG 3 cut(s) 1712, 1792, 2195
BtsI GCAGTG 3 cut(s) 238, 1145, 1854
BtsIMutI CAGTG 7 cut(s) 18, 238, 1080, 1120, 1145, 1854, 2308
BveI ACCTGC 3 cut(s) 1289, 1958, 2152
Cac8I GCNNGC 7 cut(s) 76, 245, 322, 418, 1152, 2103, 2325
CaiI CAGNNNCTG 1 cut(s) 1079
CfoI GCGC 2 cut(s) 144, 326
Cfr13I GGNCC 5 cut(s) 1340, 1642, 1648, 1710, 1936
CseI GACGC 1 cut(s) 1327
Csp6I GTAC 6 cut(s) 166, 236, 452, 779, 869, 1852
CviAII CATG 6 cut(s) 592, 2092, 2229, 2297, 2324, 2348
CviQI GTAC 6 cut(s) 166, 236, 452, 779, 869, 1852
DpnI GATC 7 cut(s) 407, 705, 1728, 1734, 1792, 1956, 2133
DpnII GATC 7 cut(s) 405, 703, 1726, 1732, 1790, 1954, 2131
DraI TTTAAA 1 cut(s) 954
EaeI YGGCCR 2 cut(s) 929, 1274
Eam1104I CTCTTC 1 cut(s) 1528
EarI CTCTTC 1 cut(s) 1528
Ecl136II GAGCTC 2 cut(s) 1041, 1931
Eco130I CCWWGG 1 cut(s) 2091
Eco147I AGGCCT 1 cut(s) 700
Eco24I GRGCYC 4 cut(s) 65, 1043, 1933, 2021
Eco47I GGWCC 2 cut(s) 1648, 1936
Eco47III AGCGCT 1 cut(s) 325
Eco53kI GAGCTC 2 cut(s) 1041, 1931
Eco57I CTGAAG 3 cut(s) 1665, 1961, 2307
EcoICRI GAGCTC 2 cut(s) 1041, 1931
EcoO109I RGGNCCY 2 cut(s) 1340, 1648
EcoRII CCWGG 2 cut(s) 274, 1644
EcoT14I CCWWGG 1 cut(s) 2091
EcoT38I GRGCYC 4 cut(s) 65, 1043, 1933, 2021
ErhI CCWWGG 1 cut(s) 2091
FaeI CATG 6 cut(s) 595, 2095, 2232, 2300, 2327, 2351
FalI AAGNNNNNCTT 2 cut(s) 1751, 1783
FaqI GGGAC 3 cut(s) 609, 1096, 1252
FatI CATG 6 cut(s) 591, 2091, 2228, 2296, 2323, 2347
FauI CCCGC 1 cut(s) 436
FauNDI CATATG 1 cut(s) 154
FbaI TGATCA 1 cut(s) 2131
FblI GTMKAC 1 cut(s) 2418
Fnu4HI GCNGC 6 cut(s) 750, 785, 1256, 1539, 1542, 2099
FokI GGATG 3 cut(s) 1719, 1799, 2182
FriOI GRGCYC 4 cut(s) 65, 1043, 1933, 2021
Fsp4HI GCNGC 6 cut(s) 750, 785, 1256, 1539, 1542, 2099
FspBI CTAG 4 cut(s) 417, 962, 1151, 1755
GlaI GCGC 2 cut(s) 143, 325
GluI GCNGC 6 cut(s) 750, 785, 1256, 1539, 1542, 2099
GsaI CCCAGC 2 cut(s) 974, 1083
GsuI CTGGAG 1 cut(s) 1161
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 8 cut(s) 279, 700, 931, 1195, 1276, 1341, 1644, 1711
HapII CCGG 2 cut(s) 890, 1168
HgaI GACGC 1 cut(s) 1327
HhaI GCGC 2 cut(s) 144, 326
Hin1I GRCGYC 1 cut(s) 1241
Hin1II CATG 6 cut(s) 595, 2095, 2232, 2300, 2327, 2351
Hin6I GCGC 2 cut(s) 142, 324
HinP1I GCGC 2 cut(s) 142, 324
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HindIII AAGCTT 1 cut(s) 2024
HinfI GANTC 6 cut(s) 8, 472, 478, 514, 1353, 2087
HpaI GTTAAC 1 cut(s) 225
HpaII CCGG 2 cut(s) 890, 1168
HphI GGTGA 4 cut(s) 815, 1087, 1603, 2176
Hpy188I TCNGA 7 cut(s) 477, 505, 719, 1045, 1959, 2053, 2218
Hpy99I CGWCG 1 cut(s) 2269
HpyAV CCTTC 5 cut(s) 595, 937, 1741, 1917, 2324
HpyCH4III ACNGT 8 cut(s) 96, 382, 923, 1075, 2303, 2316, 2416, 2457
HpyCH4IV ACGT 6 cut(s) 365, 559, 680, 1241, 1795, 2267
HpyF10VI GCNNNNNNNGC 9 cut(s) 84, 581, 632, 1055, 1136, 1151, 1282, 1447, 1979
HpySE526I ACGT 6 cut(s) 365, 559, 680, 1241, 1795, 2267
Hsp92I GRCGYC 1 cut(s) 1241
Hsp92II CATG 6 cut(s) 595, 2095, 2232, 2300, 2327, 2351
HspAI GCGC 2 cut(s) 142, 324
Kpn2I TCCGGA 1 cut(s) 1167
Ksp22I TGATCA 1 cut(s) 2131
KspAI GTTAAC 1 cut(s) 225
Kzo9I GATC 7 cut(s) 405, 703, 1726, 1732, 1790, 1954, 2131
LguI GCTCTTC 1 cut(s) 1528
LmnI GCTCC 5 cut(s) 83, 1038, 1127, 1142, 2095
Lsp1109I GCAGC 6 cut(s) 736, 796, 1267, 1525, 1528, 2085
LweI GCATC 3 cut(s) 1687, 1867, 1969
MaeI CTAG 4 cut(s) 417, 962, 1151, 1755
MaeII ACGT 6 cut(s) 365, 559, 680, 1241, 1795, 2267
MaeIII GTNAC 6 cut(s) 13, 128, 376, 1093, 1228, 2437
MalI GATC 7 cut(s) 407, 705, 1728, 1734, 1792, 1956, 2133
MboI GATC 7 cut(s) 405, 703, 1726, 1732, 1790, 1954, 2131
MboII GAAGA 8 cut(s) 210, 427, 756, 1542, 1545, 2060, 2231, 2348
MfeI CAATTG 1 cut(s) 1872
MflI RGATCY 1 cut(s) 1954
MhlI GDGCHC 5 cut(s) 65, 1043, 1147, 1933, 2021
MlsI TGGCCA 1 cut(s) 931
MluNI TGGCCA 1 cut(s) 931
MlyI GAGTC 2 cut(s) 17, 1347
MmeI TCCRAC 2 cut(s) 1330, 2335
Mox20I TGGCCA 1 cut(s) 931
MroI TCCGGA 1 cut(s) 1167
MroXI GAANNNNTTC 1 cut(s) 2036
MscI TGGCCA 1 cut(s) 931
MseI TTAA 8 cut(s) 224, 690, 953, 1464, 1505, 1518, 2180, 2382
MslI CAYNNNNRTG 1 cut(s) 2301
Msp20I TGGCCA 1 cut(s) 931
MspI CCGG 2 cut(s) 890, 1168
MspR9I CCNGG 2 cut(s) 276, 1646
MunI CAATTG 1 cut(s) 1872
Mva1269I GAATGC 2 cut(s) 106, 398
MvaI CCWGG 2 cut(s) 276, 1646
MwoI GCNNNNNNNGC 9 cut(s) 84, 581, 632, 1055, 1136, 1151, 1282, 1447, 1979
NcoI CCATGG 1 cut(s) 2091
NdeI CATATG 1 cut(s) 154
NdeII GATC 7 cut(s) 405, 703, 1726, 1732, 1790, 1954, 2131
NheI GCTAGC 2 cut(s) 416, 1150
NlaIII CATG 6 cut(s) 595, 2095, 2232, 2300, 2327, 2351
NmeAIII GCCGAG 1 cut(s) 1743
NmuCI GTSAC 3 cut(s) 13, 376, 1093
NspI RCATGY 1 cut(s) 2327
PaeI GCATGC 1 cut(s) 2327
PaqCI CACCTGC 2 cut(s) 1958, 2152
PceI AGGCCT 1 cut(s) 700
PciSI GCTCTTC 1 cut(s) 1528
PctI GAATGC 2 cut(s) 106, 398
PdmI GAANNNNTTC 1 cut(s) 2036
PfeI GAWTC 4 cut(s) 472, 478, 514, 2087
PflFI GACNNNGTC 1 cut(s) 180
PflMI CCANNNNNTGG 1 cut(s) 1105
PkrI GCNGC 6 cut(s) 751, 786, 1257, 1540, 1543, 2100
PleI GAGTC 2 cut(s) 16, 1347
PpsI GAGTC 2 cut(s) 16, 1347
PpuMI RGGWCCY 1 cut(s) 1648
Psp124BI GAGCTC 2 cut(s) 1043, 1933
Psp5II RGGWCCY 1 cut(s) 1648
Psp6I CCWGG 2 cut(s) 274, 1644
PspFI CCCAGC 2 cut(s) 970, 1079
PspGI CCWGG 2 cut(s) 274, 1644
PspPI GGNCC 5 cut(s) 1340, 1642, 1648, 1710, 1936
PspPPI RGGWCCY 1 cut(s) 1648
PstI CTGCAG 1 cut(s) 786
PstNI CAGNNNCTG 1 cut(s) 1079
PsuI RGATCY 1 cut(s) 1954
PsyI GACNNNGTC 1 cut(s) 180
RsaI GTAC 6 cut(s) 167, 237, 453, 780, 870, 1853
RsaNI GTAC 6 cut(s) 166, 236, 452, 779, 869, 1852
RseI CAYNNNNRTG 1 cut(s) 2301
SacI GAGCTC 2 cut(s) 1043, 1933
SapI GCTCTTC 1 cut(s) 1528
SaqAI TTAA 8 cut(s) 224, 690, 953, 1464, 1505, 1518, 2180, 2382
SatI GCNGC 6 cut(s) 750, 785, 1256, 1539, 1542, 2099
Sau3AI GATC 7 cut(s) 405, 703, 1726, 1732, 1790, 1954, 2131
Sau96I GGNCC 5 cut(s) 1340, 1642, 1648, 1710, 1936
SchI GAGTC 2 cut(s) 17, 1347
ScrFI CCNGG 2 cut(s) 276, 1646
SduI GDGCHC 5 cut(s) 65, 1043, 1147, 1933, 2021
SfaNI GCATC 3 cut(s) 1687, 1867, 1969
SfcI CTRYAG 2 cut(s) 782, 1233
SinI GGWCC 2 cut(s) 1648, 1936
SmiMI CAYNNNNRTG 1 cut(s) 2301
SmlI CTYRAG 4 cut(s) 694, 1395, 1457, 2106
SmoI CTYRAG 4 cut(s) 694, 1395, 1457, 2106
SphI GCATGC 1 cut(s) 2327
SseBI AGGCCT 1 cut(s) 700
SsiI CCGC 4 cut(s) 443, 914, 2327, 2387
SspMI CTAG 4 cut(s) 417, 962, 1151, 1755
SstI GAGCTC 2 cut(s) 1043, 1933
StuI AGGCCT 1 cut(s) 700
StyD4I CCNGG 2 cut(s) 274, 1644
StyI CCWWGG 1 cut(s) 2091
TaaI ACNGT 8 cut(s) 96, 382, 923, 1075, 2303, 2316, 2416, 2457
TaiI ACGT 6 cut(s) 368, 562, 683, 1244, 1798, 2270
TaqI TCGA 4 cut(s) 1267, 1894, 2264, 2377
TatI WGTACW 5 cut(s) 165, 235, 451, 778, 1851
TfiI GAWTC 4 cut(s) 472, 478, 514, 2087
Tru1I TTAA 8 cut(s) 224, 690, 953, 1464, 1505, 1518, 2180, 2382
Tru9I TTAA 8 cut(s) 224, 690, 953, 1464, 1505, 1518, 2180, 2382
TscAI CASTG 7 cut(s) 18, 245, 1080, 1120, 1152, 1861, 2308
TseFI GTSAC 3 cut(s) 13, 376, 1093
TseI GCWGC 6 cut(s) 749, 784, 1255, 1538, 1541, 2098
Tsp45I GTSAC 3 cut(s) 13, 376, 1093
TspDTI ATGAA 6 cut(s) 540, 744, 1536, 2193, 2202, 2217
TspRI CASTG 7 cut(s) 18, 245, 1080, 1120, 1152, 1861, 2308
Tth111I GACNNNGTC 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 1105
VpaK11BI GGWCC 2 cut(s) 1648, 1936
XapI RAATTY 7 cut(s) 199, 495, 578, 672, 1011, 1162, 1594
XbaI TCTAGA 1 cut(s) 1754
XceI RCATGY 1 cut(s) 2327
XmiI GTMKAC 1 cut(s) 2418
XmnI GAANNNNTTC 1 cut(s) 2036
XspI CTAG 4 cut(s) 417, 962, 1151, 1755
ZraI GACGTC 1 cut(s) 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.