AT5G49350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011771
Physical Location & Seq
Reverse (-)
20009520 .. 20011099
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G49350.1

Sequence Viewer

Length: 909 bp
ATGGCGTTTTCATTCAACAGAGAGCTCCGGATCTCAGTCACCATTGTCACTTTTTTCTTCCTCTTAGTTTCCTTTCCAGGGAACACTTATAGTGAAGAAGACGATTCAGAGGTAGGAGGTGAAGGTGGAGGAATTGGAGGTGGCGGCACAGGATTTGGCGGTGGTGGGACTGGTGTGGGAGGCGGAGGGACAGGTTTTGGCGGAGGAGGATTGGGTGCTGGTGGCAGTGGTGGAGGAGGAGCAGGAGGATTAGGCAGTGGTGGGACTGGTGTGGGAGGCGGAGGAGGATTGGGTGCTGGTGGCAGTGGTGGAGGAGGAGCAGGAGGATTAGGCGGTGGTGGGACTGGTGTGGGAGGCGGAGGGACAGGTGGTGGTACTGGATTTAACGGCGGAGGGACAGGTTTTGGGCCTTTTGGCGGAGGAGGGTTGGGTACTGGTGGAGGCGGAGCAGGAGGATTAGGTGGGGGTGGGGGTAATGGAGGTTTCGGAGGAGGAGGATTAGGCGGCGGGGGATTAGGTGGGGAAGATCCACCGGAGATAGTTGCCAAAGCTTTGGAATGCTTAAATGAGAAACACATATACAGAGAGTGTGATGAATCATGGAGGCTAACGTTAAACGGAGACCTAAATATTCCGCTGGGGAGGACAGAAGAGTTCTGTGAAGGACCATGCTTCTCAGAAACACATTTGGCTTTGAATTGCATTGAAGAAATTATTCACCACTACAGATTCTTTAACAGAGCCACCATTCACGACATCCGTGAAACCCTCAAGTCTGGCTGCAGCTACGGACCTGAACGAGGTGTTTTCAACGTCTTGGAGCATATTGAAGATGAAGAAGAAAATGCAAGTGAGAAGATAAAGTCAAGATTTGGGCCGTTGCTATTCATTATTGCCTTGCTTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

302

Amino Acids

28.91

Weight (kDa)

4.64

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7731 PF24865 178 - 276 2.6e-38 Domain of unknown function (DUF7731)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011771)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49350 AT5G49350
fragaria_vesca FvH4_4g19330
malus_domestica MD13G1157600.v1.1 MD16G1158500.v1.1
prunus_persica Prupe.1G123300_v2.0.a1
pyrus_communis pycom13g13490 pycom16g13340
rosa_chinensis RchiOBHm_Chr4g0424351
rosa_laevigata RLG00000007482
rosa_multiflora Rmu_sc0005995.1_g000010
rosa_roxburghii Rroxscaffold_5G00366300
rosa_rugosa Rorug04G0196600 Rorug04G0196700
rosa_samantha Rh4AG253000 Rh4BG258400 Rh4CG269400 Rh4DG252800
rosa_wichuraiana Rw4G021820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 27
AclI AACGTT 1 cut(s) 611
AclWI GGATC 2 cut(s) 38, 521
AfaI GTAC 2 cut(s) 376, 433
AfiI CCNNNNNNNGG 3 cut(s) 78, 416, 800
AgsI TTSAA 5 cut(s) 16, 697, 707, 811, 830
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 3 cut(s) 25, 551, 786
AluI AGCT 3 cut(s) 25, 551, 786
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 615
AlwI GGATC 2 cut(s) 38, 521
Aor13HI TCCGGA 1 cut(s) 27
AoxI GGCC 2 cut(s) 407, 875
ApeKI GCWGC 2 cut(s) 780, 783
Asp700I GAANNNNTTC 1 cut(s) 714
AspS9I GGNCC 4 cut(s) 407, 665, 791, 875
AsuHPI GGTGA 3 cut(s) 31, 131, 710
AvaII GGWCC 2 cut(s) 665, 791
BanII GRGCYC 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 767, 795
BceAI ACGGC 2 cut(s) 403, 862
BciT130I CCWGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 615
BfmI CTRYAG 2 cut(s) 724, 781
BisI GCNGC 4 cut(s) 145, 505, 781, 784
BlsI GCNGC 4 cut(s) 146, 506, 782, 785
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 2 cut(s) 665, 791
BmgT120I GGNCC 4 cut(s) 407, 665, 791, 875
BmrFI CCNGG 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 755
BsaI GGTCTC 1 cut(s) 615
BsaJI CCNNGG 1 cut(s) 77
BsaWI WCCGGW 2 cut(s) 27, 532
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 416, 800
Bse1I ACTGG 5 cut(s) 175, 271, 349, 382, 439
BseAI TCCGGA 1 cut(s) 27
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 1 cut(s) 756
BseLI CCNNNNNNNGG 3 cut(s) 78, 416, 800
BseMII CTCAG 2 cut(s) 48, 690
BseNI ACTGG 5 cut(s) 175, 271, 349, 382, 439
BseRI GAGGAG 9 cut(s) 219, 249, 252, 297, 327, 330, 435, 504, 507
BseXI GCAGC 2 cut(s) 767, 795
BseYI CCCAGC 1 cut(s) 637
BshFI GGCC 2 cut(s) 409, 877
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 28, 533
BslFI GGGAC 6 cut(s) 181, 202, 277, 355, 376, 409
BslI CCNNNNNNNGG 3 cut(s) 78, 416, 800
BsmAI GTCTC 1 cut(s) 615
BsmFI GGGAC 6 cut(s) 181, 202, 277, 355, 376, 409
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 2 cut(s) 409, 877
Bso31I GGTCTC 1 cut(s) 615
Bsp1286I GDGCHC 1 cut(s) 27
Bsp13I TCCGGA 1 cut(s) 27
Bsp143I GATC 2 cut(s) 30, 526
BspANI GGCC 2 cut(s) 409, 877
BspCNI CTCAG 2 cut(s) 47, 689
BspEI TCCGGA 1 cut(s) 27
BspMAI CTGCAG 1 cut(s) 785
BspPI GGATC 2 cut(s) 38, 521
BspTNI GGTCTC 1 cut(s) 615
BsrI ACTGG 5 cut(s) 175, 271, 349, 382, 439
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 2 cut(s) 30, 526
Bst2UI CCWGG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 645
BstDEI CTNAG 3 cut(s) 34, 64, 676
BstENI CCTNNNNNAGG 1 cut(s) 798
BstF5I GGATG 1 cut(s) 756
BstKTI GATC 2 cut(s) 33, 529
BstMAI GTCTC 1 cut(s) 615
BstMBI GATC 2 cut(s) 30, 526
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 2 cut(s) 724, 781
BstV1I GCAGC 2 cut(s) 767, 795
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 2 cut(s) 30, 526
BstXI CCANNNNNNTGG 1 cut(s) 553
BstYI RGATCY 2 cut(s) 30, 526
BsuRI GGCC 2 cut(s) 409, 877
BtsCI GGATG 1 cut(s) 756
BtsI GCAGTG 3 cut(s) 232, 262, 310
BtsIMutI CAGTG 3 cut(s) 232, 262, 310
Cfr13I GGNCC 4 cut(s) 407, 665, 791, 875
Csp6I GTAC 2 cut(s) 375, 432
CviAII CATG 2 cut(s) 600, 669
CviJI RGCY 9 cut(s) 25, 409, 551, 607, 692, 743, 780, 786, 877
CviKI_1 RGCY 9 cut(s) 25, 409, 551, 607, 692, 743, 780, 786, 877
CviQI GTAC 2 cut(s) 375, 432
DdeI CTNAG 3 cut(s) 34, 64, 676
DpnI GATC 2 cut(s) 32, 528
DpnII GATC 2 cut(s) 30, 526
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
EciI GGCGGA 7 cut(s) 198, 216, 294, 372, 405, 432, 459
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco31I GGTCTC 1 cut(s) 615
Eco47I GGWCC 2 cut(s) 665, 791
Eco53kI GAGCTC 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 25
EcoNI CCTNNNNNAGG 1 cut(s) 798
EcoRII CCWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 2 cut(s) 603, 672
FaiI YATR 6 cut(s) 90, 578, 580, 601, 670, 825
FaqI GGGAC 6 cut(s) 181, 202, 277, 355, 376, 409
FatI CATG 2 cut(s) 599, 668
FauI CCCGC 1 cut(s) 500
Fnu4HI GCNGC 4 cut(s) 145, 505, 781, 784
FokI GGATG 1 cut(s) 743
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 4 cut(s) 145, 505, 781, 784
GluI GCNGC 4 cut(s) 145, 505, 781, 784
GsaI CCCAGC 1 cut(s) 641
HaeIII GGCC 2 cut(s) 409, 877
HapII CCGG 2 cut(s) 28, 533
Hin1II CATG 2 cut(s) 603, 672
HindIII AAGCTT 1 cut(s) 549
HinfI GANTC 3 cut(s) 104, 596, 729
HpaII CCGG 2 cut(s) 28, 533
HphI GGTGA 3 cut(s) 31, 131, 710
Hpy188I TCNGA 3 cut(s) 109, 488, 679
Hpy188III TCNNGA 3 cut(s) 28, 752, 867
HpyAV CCTTC 2 cut(s) 116, 656
HpyCH4IV ACGT 2 cut(s) 611, 813
HpyCH4V TGCA 3 cut(s) 702, 783, 848
HpyF3I CTNAG 3 cut(s) 34, 64, 676
HpySE526I ACGT 2 cut(s) 611, 813
Hsp92II CATG 2 cut(s) 603, 672
Kpn2I TCCGGA 1 cut(s) 27
Kzo9I GATC 2 cut(s) 30, 526
LmnI GCTCC 5 cut(s) 30, 239, 317, 446, 820
Lsp1109I GCAGC 2 cut(s) 767, 795
MaeII ACGT 2 cut(s) 611, 813
MaeIII GTNAC 2 cut(s) 37, 46
MalI GATC 2 cut(s) 32, 528
MboI GATC 2 cut(s) 30, 526
MflI RGATCY 2 cut(s) 30, 526
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 3 cut(s) 132, 697, 711
MroI TCCGGA 1 cut(s) 27
MroXI GAANNNNTTC 1 cut(s) 714
MseI TTAA 4 cut(s) 384, 563, 614, 735
MspA1I CMGCKG 1 cut(s) 637
MspI CCGG 2 cut(s) 28, 533
MspR9I CCNGG 1 cut(s) 78
Mva1269I GAATGC 1 cut(s) 563
MvaI CCWGG 1 cut(s) 78
NdeII GATC 2 cut(s) 30, 526
NlaIII CATG 2 cut(s) 603, 672
NmuCI GTSAC 2 cut(s) 37, 46
PctI GAATGC 1 cut(s) 563
PdmI GAANNNNTTC 1 cut(s) 714
PfeI GAWTC 3 cut(s) 104, 596, 729
PkrI GCNGC 4 cut(s) 146, 506, 782, 785
Psp124BI GAGCTC 1 cut(s) 27
Psp1406I AACGTT 1 cut(s) 611
Psp6I CCWGG 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 637
PspGI CCWGG 1 cut(s) 76
PspPI GGNCC 4 cut(s) 407, 665, 791, 875
PstI CTGCAG 1 cut(s) 785
PsuI RGATCY 2 cut(s) 30, 526
RsaI GTAC 2 cut(s) 376, 433
RsaNI GTAC 2 cut(s) 375, 432
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 4 cut(s) 384, 563, 614, 735
SatI GCNGC 4 cut(s) 145, 505, 781, 784
Sau3AI GATC 2 cut(s) 30, 526
Sau96I GGNCC 4 cut(s) 407, 665, 791, 875
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 1 cut(s) 27
SfcI CTRYAG 2 cut(s) 724, 781
SinI GGWCC 2 cut(s) 665, 791
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
Sse9I AATT 3 cut(s) 132, 697, 711
SspI AATATT 1 cut(s) 631
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 76
TaiI ACGT 2 cut(s) 614, 816
TasI AATT 3 cut(s) 132, 697, 711
TauI GCSGC 2 cut(s) 147, 507
TfiI GAWTC 3 cut(s) 104, 596, 729
Tru1I TTAA 4 cut(s) 384, 563, 614, 735
Tru9I TTAA 4 cut(s) 384, 563, 614, 735
TscAI CASTG 3 cut(s) 232, 262, 310
TseFI GTSAC 2 cut(s) 37, 46
TseI GCWGC 2 cut(s) 780, 783
Tsp45I GTSAC 2 cut(s) 37, 46
TspDTI ATGAA 3 cut(s) 609, 849, 877
TspGWI ACGGA 3 cut(s) 633, 749, 804
TspRI CASTG 3 cut(s) 232, 262, 310
VpaK11BI GGWCC 2 cut(s) 665, 791
XagI CCTNNNNNAGG 1 cut(s) 798
XmnI GAANNNNTTC 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.