Rorug04G0196700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011771
Physical Location & Seq
Reverse (-)
34231105 .. 34233277
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0196700.1

Sequence Viewer

Length: 1539 bp
ATGACGCAACACCGCTTCATTATGGTAACATTGCCCACTCAAGGCCACATCAATCCTTCCCTCCAATTCGCCAAGCGTCTCATTTGCATCACCGGTGTACATGTAACGTTTGTCACGTCCCTCTCCGCCCACCACCGCATTGGCAATAGCATTAGTACTCCTAGTGGCTTGACCTTCGCCCCCTTTTCCGACGGATATGACCGAGGGTTAAAGTCCGGGGACGATCTTCAGCACTTCATGTCCGAGCTAAAGCGTCGTGGCAAGCAAGCGATCACGGATCTTGTAGTGTCTAGTGCAAGCGAGGGCCACCCTTACACTTGCCTATTGTTCGCCTTACTTCTTCCTTGGGTGGCGGAACTGGCACTAGAAATACCAGGATTGCCGCTAGCGCTGAAGAGCCGCGACCTTCCTTCCTTCATTGTTGCTACGAATCCGTACAACGGAGCTGTCCAATTGTTCGAAGAACAGTTCGAGAAGCTCGGACAAGAAAGCAGGCCAATCATACTAGTGAACACGTTTGATGCACTAGAACCGGACGCGTTAAAAGCAATAGACAGGTACAACTTGATCGGAATCGGGCCTTTGATGCCATCGGCTTTCTTGGACAGCAAGGACCCGTCCGATAAATCATTCGGAGGCGATCTTTTCCAGAAGTCGAAGGAGTCACCGTACCTGGAATGGCTGAACTCAAAGCCAAAAGAGTCTGTCGTCTACGTCTCGTTTGGGAGCATTAATTCCGTCCTGTCCAAGATTCAAATGGAGGAAATTGCAAAAGGGTTGTTGGATTCCGGACGTCCGTTTCTGTGGGTGATTAGAGAAAACCAAAAGAGTGGACAAAGTAAGGAAGAGAAAGAAGACGAGGAGCTGAGTTGCAGAGAGGAACTAGAAGAGCTTGGGATGATAGTCCCGTGGTGTAGTCAAGTGGAGGTTCTTTCGAATCCTTCATTGGGTTGTTTTGTGACACATTGTGGGTGGAATTCAAGCTTGGAGAGTTTGGTTTGTGGGGTACCAGTGGTGGCATTTCCCCAGTGGACAGACCAAGGCACAAATGCCAAGTTGATAGAGGACATTTGGAAAACAGGGGTGAGGGTAGCACCGAATGCGGAGGGTGTTGTTGTGGGTGAGGAGCTCAAGAGGTGTCTGGATTTGGTCATGGGAAGTGAAGAGTTGAGAAGCAATGCTAAGAAATGGAAGGAGTTGGCAAGAGAGGCTGCGGGTTCTGAAGCGGACGTCCGCACTTTGCTAAAGTGCGGACGGCGACGCAGCGGCTGTGTTCCAGGCGGCGACGGCGGCTCGGGGCTTGGCGGACGGAGGCCGGAGGCTTGGCGGACGGTTCTGGGCAGCGTTCGAGGTCGGAGTTGCAGGTTTCTGGGCAGCAAGCTCACCTGCAACTGCAGGTTTCTGGGCAAGGCTGCAACCACGTCGCCGGCGACTCCACCCACTGCAGACCCGTCCGTCCGACCCCTGGCATCCGTCCGGCAAGCTCCGCCGCTCCGTCAAGCCCCGAGCCGAGCTGCTGCATCGACGTCCGCACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

512

Amino Acids

55.79

Weight (kDa)

7.51

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 225 - 394 1.5e-22 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011771)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49350 AT5G49350
fragaria_vesca FvH4_4g19330
malus_domestica MD13G1157600.v1.1 MD16G1158500.v1.1
prunus_persica Prupe.1G123300_v2.0.a1
pyrus_communis pycom13g13490 pycom16g13340
rosa_chinensis RchiOBHm_Chr4g0424351
rosa_laevigata RLG00000007482
rosa_multiflora Rmu_sc0005995.1_g000010
rosa_roxburghii Rroxscaffold_5G00366300
rosa_rugosa Rorug04G0196600 Rorug04G0196700
rosa_samantha Rh4AG253000 Rh4BG258400 Rh4CG269400 Rh4DG252800
rosa_wichuraiana Rw4G021820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1394
AasI GACNNNNNNGTC 1 cut(s) 1454
AatII GACGTC 3 cut(s) 796, 1233, 1529
Acc36I ACCTGC 3 cut(s) 1353, 1386, 1394
Acc65I GGTACC 1 cut(s) 1006
AccB1I GGYRCC 1 cut(s) 1006
AccBSI CCGCTC 1 cut(s) 1492
AccI GTMKAC 1 cut(s) 711
AccII CGCG 2 cut(s) 402, 539
AccIII TCCGGA 1 cut(s) 788
AclI AACGTT 1 cut(s) 107
AclWI GGATC 1 cut(s) 285
AcsI RAATTY 1 cut(s) 976
AcuI CTGAAG 3 cut(s) 212, 413, 1242
AcyI GRCGYC 3 cut(s) 793, 1230, 1526
AdeI CACNNNGTG 1 cut(s) 968
AfaI GTAC 6 cut(s) 99, 157, 437, 560, 671, 1008
AfeI AGCGCT 1 cut(s) 390
AfiI CCNNNNNNNGG 4 cut(s) 41, 440, 947, 1465
AflIII ACRYGT 3 cut(s) 100, 513, 537
AgeI ACCGGT 1 cut(s) 92
AgsI TTSAA 2 cut(s) 755, 981
AhlI ACTAGT 1 cut(s) 505
AjiI CACGTC 2 cut(s) 117, 1422
AjnI CCWGG 4 cut(s) 373, 672, 1276, 1464
AjuI GAANNNNNNNTTGG 4 cut(s) 929, 961, 968, 1000
Alw21I GWGCWC 1 cut(s) 1131
Alw26I GTCTC 2 cut(s) 83, 721
AlwI GGATC 1 cut(s) 285
AlwNI CAGNNNCTG 1 cut(s) 1269
Ama87I CYCGRG 2 cut(s) 1294, 1504
Aor13HI TCCGGA 1 cut(s) 788
Aor51HI AGCGCT 1 cut(s) 390
AoxI GGCC 5 cut(s) 43, 304, 494, 578, 1313
ApeKI GCWGC 7 cut(s) 1211, 1263, 1341, 1374, 1412, 1514, 1517
ApoI RAATTY 1 cut(s) 976
AseI ATTAAT 1 cut(s) 732
AsiGI ACCGGT 1 cut(s) 92
Asp718I GGTACC 1 cut(s) 1006
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 3 cut(s) 304, 578, 613
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 6 cut(s) 82, 657, 820, 1096, 1133, 1375
AsuII TTCGAA 2 cut(s) 459, 935
AsuNHI GCTAGC 1 cut(s) 385
AvaI CYCGRG 2 cut(s) 1294, 1504
AvaII GGWCC 1 cut(s) 613
BanI GGYRCC 1 cut(s) 1006
BanII GRGCYC 1 cut(s) 1131
BbsI GAAGAC 1 cut(s) 861
Bbv12I GWGCWC 1 cut(s) 1131
BbvI GCAGC 7 cut(s) 1198, 1275, 1353, 1386, 1399, 1501, 1504
BccI CCATC 1 cut(s) 598
BceAI ACGGC 2 cut(s) 1271, 1303
BcgI CGANNNNNNTGC 2 cut(s) 1404, 1438
BciT130I CCWGG 4 cut(s) 375, 674, 1278, 1466
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 83, 721
BcuI ACTAGT 1 cut(s) 505
BfaI CTAG 7 cut(s) 162, 291, 365, 386, 506, 527, 884
BfmI CTRYAG 2 cut(s) 1393, 1443
BfoI RGCGCY 1 cut(s) 392
BfuAI ACCTGC 3 cut(s) 1353, 1386, 1394
BmcAI AGTACT 1 cut(s) 157
Bme1390I CCNGG 5 cut(s) 217, 375, 674, 1278, 1466
Bme18I GGWCC 1 cut(s) 613
BmeT110I CYCGRG 2 cut(s) 1294, 1504
BmgBI CACGTC 2 cut(s) 117, 1422
BmgT120I GGNCC 3 cut(s) 304, 578, 613
BmiI GGNNCC 2 cut(s) 615, 1008
BmrFI CCNGG 5 cut(s) 217, 375, 674, 1278, 1466
BmrI ACTGGG 1 cut(s) 1021
BmsI GCATC 5 cut(s) 96, 511, 576, 1478, 1529
BmtI GCTAGC 1 cut(s) 389
BmuI ACTGGG 1 cut(s) 1021
BpiI GAAGAC 1 cut(s) 861
Bpu14I TTCGAA 2 cut(s) 459, 935
BpuEI CTTGAG 2 cut(s) 24, 1115
BpuMI CCSGG 1 cut(s) 217
BsaBI GATNNNNATC 1 cut(s) 572
BsaHI GRCGYC 3 cut(s) 793, 1230, 1526
BsaJI CCNNGG 6 cut(s) 202, 216, 344, 908, 1039, 1464
BsaWI WCCGGW 3 cut(s) 92, 532, 788
BsaXI ACNNNNNCTCC 2 cut(s) 653, 683
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 440, 947, 1465
Bse118I RCCGGY 2 cut(s) 92, 1426
Bse1I ACTGG 3 cut(s) 363, 1010, 1027
Bse3DI GCAATG 2 cut(s) 29, 1183
Bse8I GATNNNNATC 1 cut(s) 572
BseAI TCCGGA 1 cut(s) 788
BseBI CCWGG 4 cut(s) 375, 674, 1278, 1466
BseDI CCNNGG 6 cut(s) 202, 216, 344, 908, 1039, 1464
BseGI GGATG 2 cut(s) 903, 1469
BseJI GATNNNNATC 1 cut(s) 572
BseLI CCNNNNNNNGG 4 cut(s) 41, 440, 947, 1465
BseMI GCAATG 2 cut(s) 29, 1183
BseMII CTCAG 1 cut(s) 857
BseNI ACTGG 3 cut(s) 363, 1010, 1027
BseRI GAGGAG 2 cut(s) 875, 1139
BseXI GCAGC 7 cut(s) 1198, 1275, 1353, 1386, 1399, 1501, 1504
Bsh1236I CGCG 2 cut(s) 402, 539
BshFI GGCC 5 cut(s) 45, 306, 496, 580, 1315
BshNI GGYRCC 1 cut(s) 1006
BshTI ACCGGT 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 1131
BsiHKCI CYCGRG 2 cut(s) 1294, 1504
BsiSI CCGG 7 cut(s) 93, 216, 533, 789, 1316, 1427, 1477
BslFI GGGAC 3 cut(s) 103, 233, 890
BslI CCNNNNNNNGG 4 cut(s) 41, 440, 947, 1465
BsmAI GTCTC 2 cut(s) 83, 721
BsmBI CGTCTC 2 cut(s) 83, 721
BsmFI GGGAC 3 cut(s) 103, 233, 890
BsmI GAATGC 1 cut(s) 1105
BsnI GGCC 5 cut(s) 45, 306, 496, 580, 1315
BsoBI CYCGRG 2 cut(s) 1294, 1504
Bsp119I TTCGAA 2 cut(s) 459, 935
Bsp1286I GDGCHC 1 cut(s) 1131
Bsp13I TCCGGA 1 cut(s) 788
Bsp1407I TGTACA 1 cut(s) 97
Bsp143I GATC 5 cut(s) 223, 270, 277, 567, 640
BspANI GGCC 5 cut(s) 45, 306, 496, 580, 1315
BspCNI CTCAG 1 cut(s) 858
BspEI TCCGGA 1 cut(s) 788
BspFNI CGCG 2 cut(s) 402, 539
BspLI GGNNCC 2 cut(s) 615, 1008
BspMAI CTGCAG 2 cut(s) 1397, 1447
BspMI ACCTGC 3 cut(s) 1353, 1386, 1394
BspOI GCTAGC 1 cut(s) 389
BspPI GGATC 1 cut(s) 285
BspQI GCTCTTC 2 cut(s) 389, 882
BspT104I TTCGAA 2 cut(s) 459, 935
BspT107I GGYRCC 1 cut(s) 1006
BsrBI CCGCTC 1 cut(s) 1492
BsrDI GCAATG 2 cut(s) 29, 1183
BsrFI RCCGGY 2 cut(s) 92, 1426
BsrGI TGTACA 1 cut(s) 97
BsrI ACTGG 3 cut(s) 363, 1010, 1027
BssAI RCCGGY 2 cut(s) 92, 1426
BssECI CCNNGG 6 cut(s) 202, 216, 344, 908, 1039, 1464
BssMI GATC 5 cut(s) 223, 270, 277, 567, 640
BssNI GRCGYC 3 cut(s) 793, 1230, 1526
BssT1I CCWWGG 2 cut(s) 344, 1039
Bst2UI CCWGG 4 cut(s) 375, 674, 1278, 1466
Bst4CI ACNGT 3 cut(s) 468, 669, 1333
Bst6I CTCTTC 4 cut(s) 389, 840, 882, 1158
BstACI GRCGYC 3 cut(s) 793, 1230, 1526
BstAPI GCANNNNNTGC 1 cut(s) 1100
BstAUI TGTACA 1 cut(s) 97
BstBI TTCGAA 2 cut(s) 459, 935
BstC8I GCNNGC 8 cut(s) 263, 267, 298, 387, 494, 1379, 1428, 1482
BstDEI CTNAG 2 cut(s) 866, 1182
BstDSI CCRYGG 1 cut(s) 908
BstF5I GGATG 2 cut(s) 903, 1469
BstFNI CGCG 2 cut(s) 402, 539
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 5 cut(s) 226, 273, 280, 570, 643
BstMAI GTCTC 2 cut(s) 83, 721
BstMBI GATC 5 cut(s) 223, 270, 277, 567, 640
BstMWI GCNNNNNNNGC 9 cut(s) 359, 388, 545, 586, 1100, 1208, 1287, 1290, 1486
BstNI CCWGG 4 cut(s) 375, 674, 1278, 1466
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 5 cut(s) 215, 373, 672, 1276, 1464
BstSFI CTRYAG 2 cut(s) 1393, 1443
BstUI CGCG 2 cut(s) 402, 539
BstV1I GCAGC 7 cut(s) 1198, 1275, 1353, 1386, 1399, 1501, 1504
BstV2I GAAGAC 1 cut(s) 861
BstX2I RGATCY 1 cut(s) 277
BstXI CCANNNNNNTGG 2 cut(s) 140, 830
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 5 cut(s) 45, 306, 496, 580, 1315
BtgI CCRYGG 1 cut(s) 908
BtrI CACGTC 2 cut(s) 117, 1422
BtsCI GGATG 2 cut(s) 903, 1469
BtsI GCAGTG 1 cut(s) 1440
BtsIMutI CAGTG 3 cut(s) 1017, 1034, 1440
BveI ACCTGC 3 cut(s) 1353, 1386, 1394
Cac8I GCNNGC 8 cut(s) 263, 267, 298, 387, 494, 1379, 1428, 1482
CaiI CAGNNNCTG 1 cut(s) 1269
CfoI GCGC 1 cut(s) 391
Cfr10I RCCGGY 2 cut(s) 92, 1426
Cfr13I GGNCC 3 cut(s) 304, 578, 613
CseI GACGC 5 cut(s) 13, 65, 242, 545, 1269
Csp6I GTAC 6 cut(s) 98, 156, 436, 559, 670, 1007
CspAI ACCGGT 1 cut(s) 92
CviAII CATG 3 cut(s) 101, 238, 1153
CviQI GTAC 6 cut(s) 98, 156, 436, 559, 670, 1007
DdeI CTNAG 2 cut(s) 866, 1182
DpnI GATC 5 cut(s) 225, 272, 279, 569, 642
DpnII GATC 5 cut(s) 223, 270, 277, 567, 640
DraIII CACNNNGTG 1 cut(s) 968
DrdI GACNNNNNNGTC 1 cut(s) 1454
DseDI GACNNNNNNGTC 1 cut(s) 1454
Eam1104I CTCTTC 4 cut(s) 389, 840, 882, 1158
EarI CTCTTC 4 cut(s) 389, 840, 882, 1158
EciI GGCGGA 5 cut(s) 115, 368, 1320, 1342, 1476
Ecl136II GAGCTC 1 cut(s) 1129
Eco130I CCWWGG 2 cut(s) 344, 1039
Eco24I GRGCYC 1 cut(s) 1131
Eco47I GGWCC 1 cut(s) 613
Eco47III AGCGCT 1 cut(s) 390
Eco53kI GAGCTC 1 cut(s) 1129
Eco57I CTGAAG 3 cut(s) 212, 413, 1242
Eco88I CYCGRG 2 cut(s) 1294, 1504
EcoICRI GAGCTC 1 cut(s) 1129
EcoO109I RGGNCCY 1 cut(s) 613
EcoRI GAATTC 1 cut(s) 976
EcoRII CCWGG 4 cut(s) 373, 672, 1276, 1464
EcoT14I CCWWGG 2 cut(s) 344, 1039
EcoT38I GRGCYC 1 cut(s) 1131
ErhI CCWWGG 2 cut(s) 344, 1039
Esp3I CGTCTC 2 cut(s) 83, 721
FaeI CATG 3 cut(s) 104, 241, 1156
FaiI YATR 6 cut(s) 23, 102, 198, 239, 503, 1154
FaqI GGGAC 3 cut(s) 103, 233, 890
FatI CATG 3 cut(s) 100, 237, 1152
FauI CCCGC 1 cut(s) 1207
FblI GTMKAC 1 cut(s) 711
FokI GGATG 2 cut(s) 910, 1456
FriOI GRGCYC 1 cut(s) 1131
FspBI CTAG 7 cut(s) 162, 291, 365, 386, 506, 527, 884
GlaI GCGC 1 cut(s) 390
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 5 cut(s) 45, 306, 496, 580, 1315
HapII CCGG 7 cut(s) 93, 216, 533, 789, 1316, 1427, 1477
HgaI GACGC 5 cut(s) 13, 65, 242, 545, 1269
HhaI GCGC 1 cut(s) 391
Hin1I GRCGYC 3 cut(s) 793, 1230, 1526
Hin1II CATG 3 cut(s) 104, 241, 1156
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HindIII AAGCTT 1 cut(s) 982
HinfI GANTC 8 cut(s) 430, 573, 662, 701, 751, 785, 937, 1432
HpaII CCGG 7 cut(s) 93, 216, 533, 789, 1316, 1427, 1477
HphI GGTGA 6 cut(s) 82, 657, 820, 1096, 1133, 1375
Hpy166II GTNNAC 5 cut(s) 98, 511, 712, 833, 1032
Hpy188I TCNGA 9 cut(s) 190, 244, 482, 572, 622, 635, 1222, 1356, 1460
Hpy188III TCNNGA 5 cut(s) 472, 649, 789, 1132, 1142
Hpy8I GTNNAC 5 cut(s) 98, 511, 712, 833, 1032
Hpy99I CGWCG 6 cut(s) 194, 258, 1263, 1289, 1426, 1528
HpyAV CCTTC 8 cut(s) 66, 184, 416, 420, 424, 652, 951, 1186
HpyCH4III ACNGT 3 cut(s) 468, 669, 1333
HpyCH4IV ACGT 8 cut(s) 107, 116, 515, 714, 793, 1230, 1421, 1526
HpyF10VI GCNNNNNNNGC 9 cut(s) 359, 388, 545, 586, 1100, 1208, 1287, 1290, 1486
HpyF3I CTNAG 2 cut(s) 866, 1182
HpySE526I ACGT 8 cut(s) 107, 116, 515, 714, 793, 1230, 1421, 1526
Hsp92I GRCGYC 3 cut(s) 793, 1230, 1526
Hsp92II CATG 3 cut(s) 104, 241, 1156
HspAI GCGC 1 cut(s) 389
Kpn2I TCCGGA 1 cut(s) 788
KpnI GGTACC 1 cut(s) 1010
KroI GCCGGC 1 cut(s) 1426
KroNI GCCGGC 1 cut(s) 1428
Kzo9I GATC 5 cut(s) 223, 270, 277, 567, 640
LguI GCTCTTC 2 cut(s) 389, 882
LmnI GCTCC 6 cut(s) 443, 726, 862, 1126, 1489, 1497
Lsp1109I GCAGC 7 cut(s) 1198, 1275, 1353, 1386, 1399, 1501, 1504
LweI GCATC 5 cut(s) 96, 511, 576, 1478, 1529
MaeI CTAG 7 cut(s) 162, 291, 365, 386, 506, 527, 884
MaeII ACGT 8 cut(s) 107, 116, 515, 714, 793, 1230, 1421, 1526
MaeIII GTNAC 5 cut(s) 25, 103, 112, 663, 958
MalI GATC 5 cut(s) 225, 272, 279, 569, 642
MbiI CCGCTC 1 cut(s) 1492
MboI GATC 5 cut(s) 223, 270, 277, 567, 640
MboII GAAGA 8 cut(s) 218, 332, 406, 473, 857, 866, 899, 1175
MfeI CAATTG 1 cut(s) 452
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 1131
MluCI AATT 5 cut(s) 65, 452, 733, 765, 976
MluI ACGCGT 1 cut(s) 537
MlyI GAGTC 3 cut(s) 671, 710, 1426
MmeI TCCRAC 4 cut(s) 213, 762, 1334, 1483
MreI CGCCGGCG 1 cut(s) 1426
MroI TCCGGA 1 cut(s) 788
MroNI GCCGGC 1 cut(s) 1426
MseI TTAA 3 cut(s) 209, 542, 732
MslI CAYNNNNRTG 1 cut(s) 506
MspA1I CMGCKG 1 cut(s) 1266
MspI CCGG 7 cut(s) 93, 216, 533, 789, 1316, 1427, 1477
MspR9I CCNGG 5 cut(s) 217, 375, 674, 1278, 1466
MunI CAATTG 1 cut(s) 452
Mva1269I GAATGC 1 cut(s) 1105
MvaI CCWGG 4 cut(s) 375, 674, 1278, 1466
MvnI CGCG 2 cut(s) 402, 539
MwoI GCNNNNNNNGC 9 cut(s) 359, 388, 545, 586, 1100, 1208, 1287, 1290, 1486
NaeI GCCGGC 1 cut(s) 1428
NciI CCSGG 1 cut(s) 217
NdeII GATC 5 cut(s) 223, 270, 277, 567, 640
NgoMIV GCCGGC 1 cut(s) 1426
NheI GCTAGC 1 cut(s) 385
NlaIII CATG 3 cut(s) 104, 241, 1156
NlaIV GGNNCC 2 cut(s) 615, 1008
NmeAIII GCCGAG 1 cut(s) 1535
NmuCI GTSAC 3 cut(s) 112, 663, 958
NspI RCATGY 1 cut(s) 104
NspV TTCGAA 2 cut(s) 459, 935
PaqCI CACCTGC 1 cut(s) 1394
PciI ACATGT 1 cut(s) 100
PciSI GCTCTTC 2 cut(s) 389, 882
PcsI WCGNNNNNNNCGW 2 cut(s) 113, 1427
PctI GAATGC 1 cut(s) 1105
PdiI GCCGGC 1 cut(s) 1428
PfeI GAWTC 5 cut(s) 430, 573, 751, 785, 937
PinAI ACCGGT 1 cut(s) 92
PleI GAGTC 3 cut(s) 670, 709, 1426
PpsI GAGTC 3 cut(s) 670, 709, 1426
PpuMI RGGWCCY 1 cut(s) 613
PscI ACATGT 1 cut(s) 100
PshBI ATTAAT 1 cut(s) 732
Psp124BI GAGCTC 1 cut(s) 1131
Psp1406I AACGTT 1 cut(s) 107
Psp5II RGGWCCY 1 cut(s) 613
Psp6I CCWGG 4 cut(s) 373, 672, 1276, 1464
PspGI CCWGG 4 cut(s) 373, 672, 1276, 1464
PspN4I GGNNCC 2 cut(s) 615, 1008
PspPI GGNCC 3 cut(s) 304, 578, 613
PspPPI RGGWCCY 1 cut(s) 613
PstI CTGCAG 2 cut(s) 1397, 1447
PstNI CAGNNNCTG 1 cut(s) 1269
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 6 cut(s) 99, 157, 437, 560, 671, 1008
RsaNI GTAC 6 cut(s) 98, 156, 436, 559, 670, 1007
RseI CAYNNNNRTG 1 cut(s) 506
SacI GAGCTC 1 cut(s) 1131
SapI GCTCTTC 2 cut(s) 389, 882
SaqAI TTAA 3 cut(s) 209, 542, 732
Sau3AI GATC 5 cut(s) 223, 270, 277, 567, 640
Sau96I GGNCC 3 cut(s) 304, 578, 613
ScaI AGTACT 1 cut(s) 157
SchI GAGTC 3 cut(s) 671, 710, 1426
ScrFI CCNGG 5 cut(s) 217, 375, 674, 1278, 1466
SduI GDGCHC 1 cut(s) 1131
SfaNI GCATC 5 cut(s) 96, 511, 576, 1478, 1529
SfcI CTRYAG 2 cut(s) 1393, 1443
SfuI TTCGAA 2 cut(s) 459, 935
SgrAI CRCCGGYG 2 cut(s) 92, 1426
SinI GGWCC 1 cut(s) 613
SmiMI CAYNNNNRTG 1 cut(s) 506
SmlI CTYRAG 2 cut(s) 39, 1130
SmoI CTYRAG 2 cut(s) 39, 1130
SpeI ACTAGT 1 cut(s) 505
Sse9I AATT 5 cut(s) 65, 452, 733, 765, 976
SspMI CTAG 7 cut(s) 162, 291, 365, 386, 506, 527, 884
SstI GAGCTC 1 cut(s) 1131
StyD4I CCNGG 5 cut(s) 215, 373, 672, 1276, 1464
StyI CCWWGG 2 cut(s) 344, 1039
TaaI ACNGT 3 cut(s) 468, 669, 1333
TaiI ACGT 8 cut(s) 110, 119, 518, 717, 796, 1233, 1424, 1529
TaqI TCGA 6 cut(s) 459, 471, 656, 935, 1348, 1523
TaqII GACCGA 1 cut(s) 216
TasI AATT 5 cut(s) 65, 452, 733, 765, 976
TatI WGTACW 2 cut(s) 97, 155
TauI GCSGC 6 cut(s) 385, 402, 1269, 1284, 1293, 1492
TfiI GAWTC 5 cut(s) 430, 573, 751, 785, 937
Tru1I TTAA 3 cut(s) 209, 542, 732
Tru9I TTAA 3 cut(s) 209, 542, 732
TscAI CASTG 3 cut(s) 1017, 1034, 1447
TseFI GTSAC 3 cut(s) 112, 663, 958
TseI GCWGC 7 cut(s) 1211, 1263, 1341, 1374, 1412, 1514, 1517
Tsp45I GTSAC 3 cut(s) 112, 663, 958
TspDTI ATGAA 4 cut(s) 7, 226, 406, 933
TspRI CASTG 3 cut(s) 1017, 1034, 1447
VpaK11BI GGWCC 1 cut(s) 613
VspI ATTAAT 1 cut(s) 732
XapI RAATTY 1 cut(s) 976
XceI RCATGY 1 cut(s) 104
XcmI CCANNNNNNNNNTGG 2 cut(s) 137, 754
XmiI GTMKAC 1 cut(s) 711
XspI CTAG 7 cut(s) 162, 291, 365, 386, 506, 527, 884
ZraI GACGTC 3 cut(s) 794, 1231, 1527
ZrmI AGTACT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.