Rh4CG269400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011771
Physical Location & Seq
Reverse (-)
52368477 .. 52369496
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG269400.1

Sequence Viewer

Length: 627 bp
ATGGTTGGCATAATTAAGGCTACTCTGCTATACATTTTGCTCCAAGGTGTAGCCATTTTCTCTTCCATATCAGTCATGGCATTAACAAAAACCCAACTCTTAGTTTTAGCTGCAGCTTTGATCTACATCTCTCTTTCCTGCTGCAAAATGGGTTCCGCAGATGAAGATGGGCCTGAAACAGGTTATGTACCACAAACAGGTAATGTACCACAAACAGGTGGTGCTGGGGAATTCGATCCGGCTCAAATTGTTGCCAAAGCCTTGCTGTGTTTCAATAACAACTATGTATACAGCAGCTGCGAACAGTCTTTTAGATTGAATGAGAGTGGAGATCTGAATGTTCCAAAAGACAAAACCGACGAGTTCTGCAATGGTGCTTGCCTCACAGAGACACACCTTGTGCTCAACTGTGTTGATCAAATTTTGGTCAACTTCGTCTTCTACAACAAGGCCACTATAAGAGATGTTAGAGATACTGTTCAGGCCGGATGTGGATCTGGCCCTGAAAGAGGCAACTTCAACGTGGAGGAGCATATGGCTGAGACGAGCAAGGCACGCAAGCCTGCAACTTACCAGATTCTTGTTGGGCTTGTTTTGATGGTTTTGGGAAATGGATTACTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

208

Amino Acids

22.39

Weight (kDa)

4.88

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7731 PF24865 80 - 179 4.4e-44 Domain of unknown function (DUF7731)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011771)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49350 AT5G49350
fragaria_vesca FvH4_4g19330
malus_domestica MD13G1157600.v1.1 MD16G1158500.v1.1
prunus_persica Prupe.1G123300_v2.0.a1
pyrus_communis pycom13g13490 pycom16g13340
rosa_chinensis RchiOBHm_Chr4g0424351
rosa_laevigata RLG00000007482
rosa_multiflora Rmu_sc0005995.1_g000010
rosa_roxburghii Rroxscaffold_5G00366300
rosa_rugosa Rorug04G0196600 Rorug04G0196700
rosa_samantha Rh4AG253000 Rh4BG258400 Rh4CG269400 Rh4DG252800
rosa_wichuraiana Rw4G021820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 288
AciI CCGC 1 cut(s) 156
AclWI GGATC 2 cut(s) 230, 502
AcsI RAATTY 2 cut(s) 230, 420
AdeI CACNNNGTG 1 cut(s) 400
AfaI GTAC 2 cut(s) 189, 207
AfiI CCNNNNNNNGG 4 cut(s) 179, 197, 215, 509
AgsI TTSAA 3 cut(s) 274, 319, 520
AluBI AGCT 3 cut(s) 110, 116, 297
AluI AGCT 3 cut(s) 110, 116, 297
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 2 cut(s) 383, 536
AlwI GGATC 2 cut(s) 230, 502
AlwNI CAGNNNCTG 1 cut(s) 297
AoxI GGCC 4 cut(s) 170, 450, 483, 499
ApeKI GCWGC 5 cut(s) 110, 113, 141, 294, 297
ApoI RAATTY 2 cut(s) 230, 420
AspS9I GGNCC 2 cut(s) 170, 500
BbsI GAAGAC 1 cut(s) 430
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 5 cut(s) 97, 125, 128, 284, 306
BccI CCATC 2 cut(s) 161, 592
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 2 cut(s) 383, 536
BfmI CTRYAG 1 cut(s) 111
BglII AGATCT 1 cut(s) 331
BisI GCNGC 5 cut(s) 111, 114, 142, 295, 298
BlsI GCNGC 5 cut(s) 112, 115, 143, 296, 299
BmgT120I GGNCC 2 cut(s) 170, 500
BmiI GGNNCC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 430
BsaBI GATNNNNATC 2 cut(s) 125, 493
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 4 cut(s) 179, 197, 215, 509
Bse3DI GCAATG 1 cut(s) 376
Bse8I GATNNNNATC 2 cut(s) 125, 493
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 494
BseJI GATNNNNATC 2 cut(s) 125, 493
BseLI CCNNNNNNNGG 4 cut(s) 179, 197, 215, 509
BseMI GCAATG 1 cut(s) 376
BseMII CTCAG 1 cut(s) 531
BseRI GAGGAG 1 cut(s) 542
BseXI GCAGC 5 cut(s) 97, 125, 128, 284, 306
BseYI CCCAGC 1 cut(s) 224
BshFI GGCC 4 cut(s) 172, 452, 485, 501
BsiHKAI GWGCWC 1 cut(s) 405
BsiSI CCGG 2 cut(s) 239, 486
BslI CCNNNNNNNGG 4 cut(s) 179, 197, 215, 509
BsmAI GTCTC 2 cut(s) 383, 536
BsmBI CGTCTC 1 cut(s) 536
BsnI GGCC 4 cut(s) 172, 452, 485, 501
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 5 cut(s) 120, 235, 331, 415, 494
BspACI CCGC 1 cut(s) 156
BspANI GGCC 4 cut(s) 172, 452, 485, 501
BspCNI CTCAG 1 cut(s) 532
BspLI GGNNCC 1 cut(s) 154
BspMAI CTGCAG 1 cut(s) 115
BspPI GGATC 2 cut(s) 230, 502
BsrDI GCAATG 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 5 cut(s) 120, 235, 331, 415, 494
BssNAI GTATAC 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 43
Bst1107I GTATAC 1 cut(s) 289
Bst4CI ACNGT 4 cut(s) 306, 410, 478, 621
Bst6I CTCTTC 1 cut(s) 67
BstC8I GCNNGC 4 cut(s) 379, 556, 560, 564
BstDEI CTNAG 2 cut(s) 100, 540
BstENI CCTNNNNNAGG 2 cut(s) 177, 507
BstF5I GGATG 1 cut(s) 494
BstKTI GATC 5 cut(s) 123, 238, 334, 418, 497
BstMAI GTCTC 2 cut(s) 383, 536
BstMBI GATC 5 cut(s) 120, 235, 331, 415, 494
BstMWI GCNNNNNNNGC 1 cut(s) 555
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 5 cut(s) 97, 125, 128, 284, 306
BstV2I GAAGAC 1 cut(s) 430
BstX2I RGATCY 2 cut(s) 331, 494
BstYI RGATCY 2 cut(s) 331, 494
BstZ17I GTATAC 1 cut(s) 289
BsuRI GGCC 4 cut(s) 172, 452, 485, 501
BtsCI GGATG 1 cut(s) 494
Cac8I GCNNGC 4 cut(s) 379, 556, 560, 564
CaiI CAGNNNCTG 1 cut(s) 297
Cfr13I GGNCC 2 cut(s) 170, 500
Csp6I GTAC 2 cut(s) 188, 206
CviAII CATG 1 cut(s) 76
CviQI GTAC 2 cut(s) 188, 206
DdeI CTNAG 2 cut(s) 100, 540
DpnI GATC 5 cut(s) 122, 237, 333, 417, 496
DpnII GATC 5 cut(s) 120, 235, 331, 415, 494
DraIII CACNNNGTG 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 43
EcoNI CCTNNNNNAGG 2 cut(s) 177, 507
EcoRI GAATTC 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
Esp3I CGTCTC 1 cut(s) 536
FaeI CATG 1 cut(s) 79
FatI CATG 1 cut(s) 75
FauNDI CATATG 1 cut(s) 534
FbaI TGATCA 1 cut(s) 415
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 5 cut(s) 111, 114, 142, 295, 298
FokI GGATG 1 cut(s) 501
Fsp4HI GCNGC 5 cut(s) 111, 114, 142, 295, 298
GluI GCNGC 5 cut(s) 111, 114, 142, 295, 298
GsaI CCCAGC 1 cut(s) 228
HaeIII GGCC 4 cut(s) 172, 452, 485, 501
HapII CCGG 2 cut(s) 239, 486
Hin1II CATG 1 cut(s) 79
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 1 cut(s) 577
HpaII CCGG 2 cut(s) 239, 486
Hpy166II GTNNAC 2 cut(s) 289, 430
Hpy188I TCNGA 2 cut(s) 336, 626
Hpy8I GTNNAC 2 cut(s) 289, 430
Hpy99I CGWCG 1 cut(s) 362
HpyCH4III ACNGT 4 cut(s) 306, 410, 478, 621
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 4 cut(s) 113, 144, 369, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 555
HpyF3I CTNAG 2 cut(s) 100, 540
HpySE526I ACGT 1 cut(s) 522
Hsp92II CATG 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 5 cut(s) 120, 235, 331, 415, 494
LmnI GCTCC 2 cut(s) 45, 529
Lsp1109I GCAGC 5 cut(s) 97, 125, 128, 284, 306
MaeII ACGT 1 cut(s) 522
MalI GATC 5 cut(s) 122, 237, 333, 417, 496
MboI GATC 5 cut(s) 120, 235, 331, 415, 494
MboII GAAGA 3 cut(s) 54, 176, 430
MflI RGATCY 2 cut(s) 331, 494
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 4 cut(s) 12, 230, 246, 420
MnlI CCTC 3 cut(s) 392, 503, 520
MseI TTAA 2 cut(s) 15, 83
MspA1I CMGCKG 1 cut(s) 297
MspI CCGG 2 cut(s) 239, 486
MwoI GCNNNNNNNGC 1 cut(s) 555
NdeI CATATG 1 cut(s) 534
NdeII GATC 5 cut(s) 120, 235, 331, 415, 494
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 577
PkrI GCNGC 5 cut(s) 112, 115, 143, 296, 299
PspFI CCCAGC 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 170, 500
PstI CTGCAG 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 297
PsuI RGATCY 2 cut(s) 331, 494
PvuII CAGCTG 1 cut(s) 297
RsaI GTAC 2 cut(s) 189, 207
RsaNI GTAC 2 cut(s) 188, 206
SaqAI TTAA 2 cut(s) 15, 83
SatI GCNGC 5 cut(s) 111, 114, 142, 295, 298
Sau3AI GATC 5 cut(s) 120, 235, 331, 415, 494
Sau96I GGNCC 2 cut(s) 170, 500
SduI GDGCHC 1 cut(s) 405
SetI ASST 9 cut(s) 49, 112, 118, 184, 202, 220, 299, 399, 525
SfcI CTRYAG 1 cut(s) 111
Sse9I AATT 4 cut(s) 12, 230, 246, 420
SsiI CCGC 1 cut(s) 156
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 4 cut(s) 306, 410, 478, 621
TaiI ACGT 1 cut(s) 525
TaqI TCGA 1 cut(s) 234
TasI AATT 4 cut(s) 12, 230, 246, 420
TfiI GAWTC 1 cut(s) 577
Tru1I TTAA 2 cut(s) 15, 83
Tru9I TTAA 2 cut(s) 15, 83
TseI GCWGC 5 cut(s) 110, 113, 141, 294, 297
TspDTI ATGAA 1 cut(s) 177
XagI CCTNNNNNAGG 2 cut(s) 177, 507
XapI RAATTY 2 cut(s) 230, 420
XcmI CCANNNNNNNNNTGG 2 cut(s) 73, 581
XmiI GTMKAC 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.