Rorug04G0196600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011771
Physical Location & Seq
Forward (+)
34222226 .. 34223916
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0196600.1

Sequence Viewer

Length: 939 bp
ATGGAACTTGTTCTTAGCAAATGGGTTTGCACATTTCTATTATGCTCTTGGCTCATCTTCTCTCCAGTATACTCAGTGGTGGGATTACATGGTGACTCTAAAGTGAGAGCAGTATATTTGGGAGGGTGGTTGGTAGTGGAAGGTTGGATCAAGCCTTCACTTTTTGATGGCATTCCCAATGGAGATATGCTTGATGGAACAGTGGTACAACTAAAGTCGGTAACTTTGGATAAGTATGTCTTTGCAGAAAATGGGGGAGGGGCCAATGTCTCTGTTAGTAGAGATGTTGCATCTTCATGGGAAACGCTGAGGGATCTGCCACTATACTCAACAGGGCATGATCTGTTTGAGAAACAAGATGGGGTTGTATTGATGGCTACTACTGGAAATCTCAAGCAAATTGATGATGCCTTAAAGTGGCCTGGTCGCATGGATAGAGTATTTCATCTTCAAAGGCCAACTCAAGCAGAAAGGGAGAAGATACTACACATAGCTGCAAAAGAAAAAATGGATAATGAGCTCATTGATTTTGTAGATTGGAGAAAGGTTGCTGAAAAGACTACTCTTTTAAGGCCTATAGAATTAAAGCTGGTACCTGCATCGTTGGAAGGTAGTGCCTTTAGGAGCAAGTTTCTCGATACAAATGAGCTTATGAGCTACAGTAGTTGGTTTGCGACTTTCAGCAGCATTATTCCAAAAGGAGGAGTGCGGAAAACCAAAATTGCAAAGAAGCTAAGCAAAATGCTGGTAAATCATCTGGGGCTAACATTGACTAAAGAAGACCGGCAGAGTGTGGTTGATCTAATGGAGCCATATGGTCAGATAAGCAATGGAATAGAACTTCTAAACCCTCCTCTTGAGGTAATAAGTTATCTTATGCATTTTGGTTGTAAATTAACATTGCTTTACTTGTGTAAAGCTAATACTGTGCATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

312

Amino Acids

35.05

Weight (kDa)

7.69

Isoelectric Point (pI)

31.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7910 PF25490 60 - 152 2.6e-16 Domain of unknown function (DUF7910)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011771)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49350 AT5G49350
fragaria_vesca FvH4_4g19330
malus_domestica MD13G1157600.v1.1 MD16G1158500.v1.1
prunus_persica Prupe.1G123300_v2.0.a1
pyrus_communis pycom13g13490 pycom16g13340
rosa_chinensis RchiOBHm_Chr4g0424351
rosa_laevigata RLG00000007482
rosa_multiflora Rmu_sc0005995.1_g000010
rosa_roxburghii Rroxscaffold_5G00366300
rosa_rugosa Rorug04G0196600 Rorug04G0196700
rosa_samantha Rh4AG253000 Rh4BG258400 Rh4CG269400 Rh4DG252800
rosa_wichuraiana Rw4G021820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 604
Acc65I GGTACC 1 cut(s) 592
AccB1I GGYRCC 1 cut(s) 592
AccI GTMKAC 1 cut(s) 69
AciI CCGC 1 cut(s) 709
AclWI GGATC 2 cut(s) 155, 321
AfaI GTAC 2 cut(s) 207, 594
AfiI CCNNNNNNNGG 2 cut(s) 417, 701
AgsI TTSAA 1 cut(s) 452
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 7 cut(s) 494, 520, 589, 649, 657, 733, 920
AluI AGCT 7 cut(s) 494, 520, 589, 649, 657, 733, 920
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 2 cut(s) 155, 321
AoxI GGCC 4 cut(s) 261, 419, 455, 572
ApeKI GCWGC 2 cut(s) 494, 684
Asp700I GAANNNNTTC 1 cut(s) 9
Asp718I GGTACC 1 cut(s) 592
AspS9I GGNCC 1 cut(s) 261
AsuHPI GGTGA 1 cut(s) 104
BanI GGYRCC 1 cut(s) 592
BanII GRGCYC 1 cut(s) 522
BarI GAAGNNNNNNTAC 2 cut(s) 432, 464
BbsI GAAGAC 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 522
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 2 cut(s) 481, 696
BccI CCATC 4 cut(s) 161, 188, 353, 367
BcgI CGANNNNNNTGC 2 cut(s) 616, 650
BciT130I CCWGG 1 cut(s) 423
BcoDI GTCTC 1 cut(s) 274
BfmI CTRYAG 2 cut(s) 576, 658
BfuAI ACCTGC 1 cut(s) 604
BisI GCNGC 2 cut(s) 495, 685
BlpI GCTNAGC 1 cut(s) 734
BlsI GCNGC 2 cut(s) 496, 686
Bme1390I CCNGG 1 cut(s) 423
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 3 cut(s) 262, 594, 810
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 3 cut(s) 299, 397, 608
BpiI GAAGAC 1 cut(s) 786
BpmI CTGGAG 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 308
Bpu1102I GCTNAGC 1 cut(s) 734
BpuEI CTTGAG 3 cut(s) 377, 447, 878
Bsc4I CCNNNNNNNGG 2 cut(s) 417, 701
Bse118I RCCGGY 1 cut(s) 783
Bse1I ACTGG 2 cut(s) 65, 388
Bse3DI GCAATG 2 cut(s) 835, 899
BseBI CCWGG 1 cut(s) 423
BseLI CCNNNNNNNGG 2 cut(s) 417, 701
BseMI GCAATG 2 cut(s) 835, 899
BseMII CTCAG 2 cut(s) 87, 299
BseNI ACTGG 2 cut(s) 65, 388
BseRI GAGGAG 2 cut(s) 717, 843
BseXI GCAGC 2 cut(s) 481, 696
BshFI GGCC 4 cut(s) 263, 421, 457, 574
BshNI GGYRCC 1 cut(s) 592
BsiHKAI GWGCWC 1 cut(s) 522
BsiSI CCGG 1 cut(s) 784
BslI CCNNNNNNNGG 2 cut(s) 417, 701
BsmAI GTCTC 1 cut(s) 274
BsmI GAATGC 1 cut(s) 171
BsnI GGCC 4 cut(s) 263, 421, 457, 574
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 4 cut(s) 147, 313, 340, 799
Bsp1720I GCTNAGC 1 cut(s) 734
BspACI CCGC 1 cut(s) 709
BspANI GGCC 4 cut(s) 263, 421, 457, 574
BspCNI CTCAG 2 cut(s) 86, 300
BspLI GGNNCC 3 cut(s) 262, 594, 810
BspMI ACCTGC 1 cut(s) 604
BspPI GGATC 2 cut(s) 155, 321
BspT107I GGYRCC 1 cut(s) 592
BsrDI GCAATG 2 cut(s) 835, 899
BsrFI RCCGGY 1 cut(s) 783
BsrI ACTGG 2 cut(s) 65, 388
BssAI RCCGGY 1 cut(s) 783
BssMI GATC 4 cut(s) 147, 313, 340, 799
BssNAI GTATAC 1 cut(s) 70
Bst1107I GTATAC 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 3 cut(s) 202, 662, 928
BstDEI CTNAG 4 cut(s) 14, 73, 308, 734
BstKTI GATC 4 cut(s) 150, 316, 343, 802
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 4 cut(s) 147, 313, 340, 799
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 2 cut(s) 576, 658
BstV1I GCAGC 2 cut(s) 481, 696
BstV2I GAAGAC 1 cut(s) 786
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BstZ17I GTATAC 1 cut(s) 70
BsuRI GGCC 4 cut(s) 263, 421, 457, 574
BtsIMutI CAGTG 2 cut(s) 81, 207
BveI ACCTGC 1 cut(s) 604
Cfr10I RCCGGY 1 cut(s) 783
Cfr13I GGNCC 1 cut(s) 261
Csp6I GTAC 2 cut(s) 206, 593
CviAII CATG 4 cut(s) 89, 297, 338, 430
CviQI GTAC 2 cut(s) 206, 593
DdeI CTNAG 4 cut(s) 14, 73, 308, 734
DpnI GATC 4 cut(s) 149, 315, 342, 801
DpnII GATC 4 cut(s) 147, 313, 340, 799
Ecl136II GAGCTC 1 cut(s) 520
Eco147I AGGCCT 1 cut(s) 574
Eco24I GRGCYC 1 cut(s) 522
Eco53kI GAGCTC 1 cut(s) 520
EcoICRI GAGCTC 1 cut(s) 520
EcoRII CCWGG 1 cut(s) 421
EcoT22I ATGCAT 1 cut(s) 882
EcoT38I GRGCYC 1 cut(s) 522
FaeI CATG 4 cut(s) 92, 300, 341, 433
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FatI CATG 4 cut(s) 88, 296, 337, 429
FauNDI CATATG 1 cut(s) 814
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 495, 685
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 2 cut(s) 495, 685
GluI GCNGC 2 cut(s) 495, 685
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 4 cut(s) 263, 421, 457, 574
HapII CCGG 1 cut(s) 784
Hin1II CATG 4 cut(s) 92, 300, 341, 433
HinfI GANTC 1 cut(s) 95
HpaII CCGG 1 cut(s) 784
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 822
Hpy188III TCNNGA 2 cut(s) 635, 857
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 3 cut(s) 134, 165, 602
HpyCH4III ACNGT 3 cut(s) 202, 662, 928
HpyCH4V TGCA 8 cut(s) 30, 245, 290, 497, 599, 725, 880, 931
HpyF3I CTNAG 4 cut(s) 14, 73, 308, 734
Hsp92II CATG 4 cut(s) 92, 300, 341, 433
KpnI GGTACC 1 cut(s) 596
Kzo9I GATC 4 cut(s) 147, 313, 340, 799
LmnI GCTCC 2 cut(s) 624, 808
Lsp1109I GCAGC 2 cut(s) 481, 696
LweI GCATC 3 cut(s) 299, 397, 608
MaeIII GTNAC 2 cut(s) 92, 220
MalI GATC 4 cut(s) 149, 315, 342, 801
MboI GATC 4 cut(s) 147, 313, 340, 799
MboII GAAGA 5 cut(s) 49, 285, 440, 490, 791
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 4 cut(s) 399, 581, 720, 893
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 125, 585
MnlI CCTC 7 cut(s) 116, 251, 303, 695, 853, 861, 864
Mph1103I ATGCAT 1 cut(s) 882
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 5 cut(s) 413, 569, 584, 896, 937
MslI CAYNNNNRTG 1 cut(s) 295
MspI CCGG 1 cut(s) 784
MspR9I CCNGG 1 cut(s) 423
Mva1269I GAATGC 1 cut(s) 171
MvaI CCWGG 1 cut(s) 423
NdeI CATATG 1 cut(s) 814
NdeII GATC 4 cut(s) 147, 313, 340, 799
NlaIII CATG 4 cut(s) 92, 300, 341, 433
NlaIV GGNNCC 3 cut(s) 262, 594, 810
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 882
PceI AGGCCT 1 cut(s) 574
PctI GAATGC 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 9
PkrI GCNGC 2 cut(s) 496, 686
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 522
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 3 cut(s) 262, 594, 810
PspPI GGNCC 1 cut(s) 261
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 2 cut(s) 207, 594
RsaNI GTAC 2 cut(s) 206, 593
RseI CAYNNNNRTG 1 cut(s) 295
SacI GAGCTC 1 cut(s) 522
SaqAI TTAA 5 cut(s) 413, 569, 584, 896, 937
SatI GCNGC 2 cut(s) 495, 685
Sau3AI GATC 4 cut(s) 147, 313, 340, 799
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 423
SduI GDGCHC 1 cut(s) 522
SfaNI GCATC 3 cut(s) 299, 397, 608
SfcI CTRYAG 2 cut(s) 576, 658
SmiMI CAYNNNNRTG 1 cut(s) 295
SmlI CTYRAG 3 cut(s) 392, 462, 857
SmoI CTYRAG 3 cut(s) 392, 462, 857
Sse9I AATT 4 cut(s) 399, 581, 720, 893
SseBI AGGCCT 1 cut(s) 574
SsiI CCGC 1 cut(s) 709
SstI GAGCTC 1 cut(s) 522
StuI AGGCCT 1 cut(s) 574
StyD4I CCNGG 1 cut(s) 421
TaaI ACNGT 3 cut(s) 202, 662, 928
TaqI TCGA 1 cut(s) 636
TasI AATT 4 cut(s) 399, 581, 720, 893
Tru1I TTAA 5 cut(s) 413, 569, 584, 896, 937
Tru9I TTAA 5 cut(s) 413, 569, 584, 896, 937
TscAI CASTG 2 cut(s) 81, 207
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 2 cut(s) 494, 684
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 2 cut(s) 285, 434
TspRI CASTG 2 cut(s) 81, 207
XmiI GTMKAC 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.