MD13G1157600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011771
Physical Location & Seq
Forward (+)
12320618 .. 12321766
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1157600.v1.1.491

Sequence Viewer

Length: 540 bp
ATGGCATTAACGATGACCCAACTCTCAGTTTTAGCTGCAGCTTTCATCTGCATTTCTCTTTTCTGCTGCAGAACAGGGATGGCAGATGAATATACACCCGAAAGAGGTGATGAACCAGAAAAGGGCACTGGCACTGAACACCAGGATCCAACTCAAATTGTTGCCAAAGCCTTGCTGTGTTTCAATGACAAATATGTATACAGCAGCTGTGAAGAGTCTTACAGATTGAATGAGAGTGGAGATCTGAAGGTGCCTGCAGAAAAAACTGATGAATACTGCAATGGTCCTTGCATGACGGAGACACAGCTTGTGCTCGATTGTATTGATAACATCATGACCAATTTCCTGTTTTACAACAAGGCCACGATTCAAGACATTCGAGACACGATTCATGCCGGATGTGGCCACGGCAAAGAAAGAGGTAAATTCGACGTGGCTGAACACATCATCAGAGCTGAAGGAAGCAATGCGTACAAGGCTGCAAACCAGATTCTGATTGGGATTGTGCTGATGATTGTGGGGAATGGATTACTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

180

Amino Acids

19.76

Weight (kDa)

4.78

Isoelectric Point (pI)

20.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7731 PF24865 50 - 149 1.6e-46 Domain of unknown function (DUF7731)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011771)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49350 AT5G49350
fragaria_vesca FvH4_4g19330
malus_domestica MD13G1157600.v1.1 MD16G1158500.v1.1
prunus_persica Prupe.1G123300_v2.0.a1
pyrus_communis pycom13g13490 pycom16g13340
rosa_chinensis RchiOBHm_Chr4g0424351
rosa_laevigata RLG00000007482
rosa_multiflora Rmu_sc0005995.1_g000010
rosa_roxburghii Rroxscaffold_5G00366300
rosa_rugosa Rorug04G0196600 Rorug04G0196700
rosa_samantha Rh4AG253000 Rh4BG258400 Rh4CG269400 Rh4DG252800
rosa_wichuraiana Rw4G021820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AccI GTMKAC 1 cut(s) 198
AclWI GGATC 2 cut(s) 140, 153
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 1 cut(s) 425
AcuI CTGAAG 2 cut(s) 266, 477
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 2 cut(s) 104, 122
AgsI TTSAA 3 cut(s) 184, 229, 371
AjiI CACGTC 1 cut(s) 433
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 5 cut(s) 35, 41, 207, 307, 455
AluI AGCT 5 cut(s) 35, 41, 207, 307, 455
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 293, 375
AlwI GGATC 2 cut(s) 140, 153
AlwNI CAGNNNCTG 2 cut(s) 207, 493
AoxI GGCC 2 cut(s) 360, 403
ApeKI GCWGC 5 cut(s) 35, 38, 66, 204, 479
ApoI RAATTY 1 cut(s) 425
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 128
BalI TGGCCA 1 cut(s) 405
BamHI GGATCC 1 cut(s) 145
BanI GGYRCC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 5 cut(s) 22, 50, 53, 216, 466
BccI CCATC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 424
BciT130I CCWGG 1 cut(s) 143
BcoDI GTCTC 2 cut(s) 293, 375
BfmI CTRYAG 3 cut(s) 36, 67, 255
BglII AGATCT 1 cut(s) 241
BisI GCNGC 5 cut(s) 36, 39, 67, 205, 480
BlsI GCNGC 5 cut(s) 37, 40, 68, 206, 481
Bme1390I CCNGG 1 cut(s) 143
Bme18I GGWCC 1 cut(s) 284
BmgBI CACGTC 1 cut(s) 433
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 147, 252
BmrFI CCNGG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 406
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 122
Bse1I ACTGG 1 cut(s) 133
Bse3DI GCAATG 2 cut(s) 286, 472
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 2 cut(s) 84, 404
BseLI CCNNNNNNNGG 2 cut(s) 104, 122
BseMI GCAATG 2 cut(s) 286, 472
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 133
BseSI GKGCMC 1 cut(s) 128
BseXI GCAGC 5 cut(s) 22, 50, 53, 216, 466
BshFI GGCC 2 cut(s) 362, 405
BshNI GGYRCC 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 1 cut(s) 396
BslI CCNNNNNNNGG 2 cut(s) 104, 122
BsmAI GTCTC 2 cut(s) 293, 375
BsnI GGCC 2 cut(s) 362, 405
Bsp1286I GDGCHC 2 cut(s) 128, 315
Bsp143I GATC 2 cut(s) 145, 241
BspANI GGCC 2 cut(s) 362, 405
BspCNI CTCAG 1 cut(s) 38
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 2 cut(s) 147, 252
BspMAI CTGCAG 3 cut(s) 40, 71, 259
BspPI GGATC 2 cut(s) 140, 153
BspT107I GGYRCC 1 cut(s) 250
BsrDI GCAATG 2 cut(s) 286, 472
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 2 cut(s) 145, 241
BssNAI GTATAC 1 cut(s) 199
Bst1107I GTATAC 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 534
Bst6I CTCTTC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 25
BstDSI CCRYGG 1 cut(s) 406
BstF5I GGATG 2 cut(s) 84, 404
BstKTI GATC 2 cut(s) 148, 244
BstMAI GTCTC 2 cut(s) 293, 375
BstMBI GATC 2 cut(s) 145, 241
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 3 cut(s) 36, 67, 255
BstSLI GKGCMC 1 cut(s) 128
BstV1I GCAGC 5 cut(s) 22, 50, 53, 216, 466
BstX2I RGATCY 2 cut(s) 145, 241
BstYI RGATCY 2 cut(s) 145, 241
BstZ17I GTATAC 1 cut(s) 199
BsuRI GGCC 2 cut(s) 362, 405
BtgI CCRYGG 1 cut(s) 406
BtrI CACGTC 1 cut(s) 433
BtsCI GGATG 2 cut(s) 84, 404
BtsIMutI CAGTG 2 cut(s) 126, 132
Cac8I GCNNGC 1 cut(s) 255
CaiI CAGNNNCTG 2 cut(s) 207, 493
CciI TCATGA 1 cut(s) 333
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 472
CviAII CATG 3 cut(s) 292, 334, 392
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 1 cut(s) 25
DpnI GATC 2 cut(s) 147, 243
DpnII GATC 2 cut(s) 145, 241
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 2 cut(s) 266, 477
EcoRII CCWGG 1 cut(s) 141
FaeI CATG 3 cut(s) 295, 337, 395
FaiI YATR 6 cut(s) 93, 195, 199, 293, 335, 393
FatI CATG 3 cut(s) 291, 333, 391
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 5 cut(s) 36, 39, 67, 205, 480
FokI GGATG 2 cut(s) 91, 411
Fsp4HI GCNGC 5 cut(s) 36, 39, 67, 205, 480
GluI GCNGC 5 cut(s) 36, 39, 67, 205, 480
HaeIII GGCC 2 cut(s) 362, 405
HapII CCGG 1 cut(s) 396
Hin1II CATG 3 cut(s) 295, 337, 395
HinfI GANTC 4 cut(s) 215, 367, 388, 490
HpaII CCGG 1 cut(s) 396
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 3 cut(s) 246, 452, 495
Hpy188III TCNNGA 3 cut(s) 334, 371, 380
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 2 cut(s) 241, 452
HpyCH4III ACNGT 1 cut(s) 534
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 7 cut(s) 38, 51, 69, 257, 279, 291, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 432
Hsp92II CATG 3 cut(s) 295, 337, 395
Kzo9I GATC 2 cut(s) 145, 241
LpnPI CCDG 9 cut(s) 60, 114, 128, 129, 155, 267, 359, 409, 500
Lsp1109I GCAGC 5 cut(s) 22, 50, 53, 216, 466
MaeII ACGT 1 cut(s) 432
MalI GATC 2 cut(s) 147, 243
MboI GATC 2 cut(s) 145, 241
MboII GAAGA 1 cut(s) 224
MflI RGATCY 2 cut(s) 145, 241
MhlI GDGCHC 2 cut(s) 128, 315
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 3 cut(s) 156, 340, 425
MluNI TGGCCA 1 cut(s) 405
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 2 cut(s) 98, 413
Mox20I TGGCCA 1 cut(s) 405
MscI TGGCCA 1 cut(s) 405
MseI TTAA 1 cut(s) 8
Msp20I TGGCCA 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 476
NdeII GATC 2 cut(s) 145, 241
NlaIII CATG 3 cut(s) 295, 337, 395
NlaIV GGNNCC 2 cut(s) 147, 252
PagI TCATGA 1 cut(s) 333
PfeI GAWTC 3 cut(s) 367, 388, 490
PkrI GCNGC 5 cut(s) 37, 40, 68, 206, 481
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 147, 252
PspPI GGNCC 1 cut(s) 284
PstI CTGCAG 3 cut(s) 40, 71, 259
PstNI CAGNNNCTG 2 cut(s) 207, 493
PsuI RGATCY 2 cut(s) 145, 241
PvuII CAGCTG 1 cut(s) 207
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 5 cut(s) 36, 39, 67, 205, 480
Sau3AI GATC 2 cut(s) 145, 241
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 2 cut(s) 128, 315
SetI ASST 9 cut(s) 37, 43, 109, 209, 252, 309, 424, 435, 457
SfcI CTRYAG 3 cut(s) 36, 67, 255
SinI GGWCC 1 cut(s) 284
Sse9I AATT 3 cut(s) 156, 340, 425
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 534
TaiI ACGT 1 cut(s) 435
TaqI TCGA 3 cut(s) 315, 379, 429
TasI AATT 3 cut(s) 156, 340, 425
TfiI GAWTC 3 cut(s) 367, 388, 490
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 2 cut(s) 133, 139
TseI GCWGC 5 cut(s) 35, 38, 66, 204, 479
TspDTI ATGAA 5 cut(s) 34, 102, 126, 285, 380
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 2 cut(s) 133, 139
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 1 cut(s) 425
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.