RchiOBHm_Chr4g0424351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0011771
Physical Location & Seq
Reverse (-)
49934467 .. 49934835
369 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39362

Sequence Viewer

Length: 369 bp
ATGATCTCCATTTGGGCAAATTCTCAGGTATACAGCAGCTGCGAACAGTCTTTTAGATTGAATGAGAGTGGAGATCTGAAAGTTCCAAAAGACAAAACCGACGAGTTCTGCAATGGTGCTTGCCTCACAGAGACACACCTTGTGCTCAACTGTGTTGATCACATTTTGGCCAACTTCGTCTTCTACAACAAGGCCACTATAAGAGATGTTAGAGATACTGTTCAGGCCGGATGTGGATCTGGCCCTGAAAGAGGCAACTTCAACGTGGAGGAGCATATGGCTGAGACGAGCAAGGCACGCACGCCTGCAACTTACCAGATTCTTGTTGGGCTTGTTTTGATGGTTTTGGGAAATGGATTACTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

122

Amino Acids

13.48

Weight (kDa)

5.25

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7731 PF24865 6 - 93 1.6e-38 Domain of unknown function (DUF7731)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011771)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49350 AT5G49350
fragaria_vesca FvH4_4g19330
malus_domestica MD13G1157600.v1.1 MD16G1158500.v1.1
prunus_persica Prupe.1G123300_v2.0.a1
pyrus_communis pycom13g13490 pycom16g13340
rosa_chinensis RchiOBHm_Chr4g0424351
rosa_laevigata RLG00000007482
rosa_multiflora Rmu_sc0005995.1_g000010
rosa_roxburghii Rroxscaffold_5G00366300
rosa_rugosa Rorug04G0196600 Rorug04G0196700
rosa_samantha Rh4AG253000 Rh4BG258400 Rh4CG269400 Rh4DG252800
rosa_wichuraiana Rw4G021820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 30
AclWI GGATC 1 cut(s) 244
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 19
AdeI CACNNNGTG 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 2 cut(s) 61, 262
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 2 cut(s) 125, 278
AlwI GGATC 1 cut(s) 244
AlwNI CAGNNNCTG 1 cut(s) 39
AoxI GGCC 4 cut(s) 168, 192, 225, 241
ApeKI GCWGC 2 cut(s) 36, 39
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 242
BalI TGGCCA 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 26, 48
BccI CCATC 1 cut(s) 334
BclI TGATCA 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 125, 278
BglII AGATCT 1 cut(s) 73
BisI GCNGC 2 cut(s) 37, 40
BlsI GCNGC 2 cut(s) 38, 41
BmgT120I GGNCC 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 118
Bse8I GATNNNNATC 1 cut(s) 235
BseGI GGATG 1 cut(s) 236
BseJI GATNNNNATC 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 2 cut(s) 38, 273
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 26, 48
BshFI GGCC 4 cut(s) 170, 194, 227, 243
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 2 cut(s) 125, 278
BsmBI CGTCTC 1 cut(s) 278
BsnI GGCC 4 cut(s) 170, 194, 227, 243
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 4 cut(s) 3, 73, 157, 236
BspANI GGCC 4 cut(s) 170, 194, 227, 243
BspCNI CTCAG 2 cut(s) 37, 274
BspPI GGATC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 118
BssMI GATC 4 cut(s) 3, 73, 157, 236
BssNAI GTATAC 1 cut(s) 31
Bst1107I GTATAC 1 cut(s) 31
Bst4CI ACNGT 4 cut(s) 48, 152, 220, 363
BstC8I GCNNGC 4 cut(s) 121, 298, 302, 306
BstDEI CTNAG 2 cut(s) 24, 282
BstENI CCTNNNNNAGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 236
BstKTI GATC 4 cut(s) 6, 76, 160, 239
BstMAI GTCTC 2 cut(s) 125, 278
BstMBI GATC 4 cut(s) 3, 73, 157, 236
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 26, 48
BstV2I GAAGAC 1 cut(s) 172
BstX2I RGATCY 2 cut(s) 73, 236
BstYI RGATCY 2 cut(s) 73, 236
BstZ17I GTATAC 1 cut(s) 31
BsuRI GGCC 4 cut(s) 170, 194, 227, 243
BtsCI GGATG 1 cut(s) 236
Cac8I GCNNGC 4 cut(s) 121, 298, 302, 306
CaiI CAGNNNCTG 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 242
CviJI RGCY 7 cut(s) 39, 170, 194, 227, 243, 281, 331
CviKI_1 RGCY 7 cut(s) 39, 170, 194, 227, 243, 281, 331
DdeI CTNAG 2 cut(s) 24, 282
DpnI GATC 4 cut(s) 5, 75, 159, 238
DpnII GATC 4 cut(s) 3, 73, 157, 236
DraIII CACNNNGTG 1 cut(s) 142
EaeI YGGCCR 1 cut(s) 168
EcoNI CCTNNNNNAGG 1 cut(s) 249
Esp3I CGTCTC 1 cut(s) 278
FaiI YATR 4 cut(s) 31, 200, 276, 278
FauNDI CATATG 1 cut(s) 276
FbaI TGATCA 1 cut(s) 157
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 37, 40
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 2 cut(s) 37, 40
GluI GCNGC 2 cut(s) 37, 40
HaeIII GGCC 4 cut(s) 170, 194, 227, 243
HapII CCGG 1 cut(s) 228
HinfI GANTC 1 cut(s) 319
HpaII CCGG 1 cut(s) 228
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 78, 368
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 1 cut(s) 104
HpyCH4III ACNGT 4 cut(s) 48, 152, 220, 363
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 2 cut(s) 111, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
HpyF3I CTNAG 2 cut(s) 24, 282
HpySE526I ACGT 1 cut(s) 264
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 4 cut(s) 3, 73, 157, 236
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 7 cut(s) 11, 209, 225, 241, 258, 318, 329
Lsp1109I GCAGC 2 cut(s) 26, 48
MaeII ACGT 1 cut(s) 264
MalI GATC 4 cut(s) 5, 75, 159, 238
MboI GATC 4 cut(s) 3, 73, 157, 236
MboII GAAGA 1 cut(s) 172
MflI RGATCY 2 cut(s) 73, 236
MhlI GDGCHC 1 cut(s) 147
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 1 cut(s) 19
MluNI TGGCCA 1 cut(s) 170
MnlI CCTC 3 cut(s) 134, 245, 262
Mox20I TGGCCA 1 cut(s) 170
MscI TGGCCA 1 cut(s) 170
Msp20I TGGCCA 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 39
MspI CCGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 297
NdeI CATATG 1 cut(s) 276
NdeII GATC 4 cut(s) 3, 73, 157, 236
PfeI GAWTC 1 cut(s) 319
PkrI GCNGC 2 cut(s) 38, 41
PspPI GGNCC 1 cut(s) 242
PstNI CAGNNNCTG 1 cut(s) 39
PsuI RGATCY 2 cut(s) 73, 236
PvuII CAGCTG 1 cut(s) 39
SatI GCNGC 2 cut(s) 37, 40
Sau3AI GATC 4 cut(s) 3, 73, 157, 236
Sau96I GGNCC 1 cut(s) 242
SduI GDGCHC 1 cut(s) 147
SetI ASST 4 cut(s) 30, 41, 141, 267
Sse9I AATT 1 cut(s) 19
TaaI ACNGT 4 cut(s) 48, 152, 220, 363
TaiI ACGT 1 cut(s) 267
TasI AATT 1 cut(s) 19
TfiI GAWTC 1 cut(s) 319
TseI GCWGC 2 cut(s) 36, 39
XagI CCTNNNNNAGG 1 cut(s) 249
XapI RAATTY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.