AT5G49400

Zinc finger CCHC domain-containing protein 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007741
Physical Location & Seq
Forward (+)
20030652 .. 20032283
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G49400.1

Sequence Viewer

Length: 828 bp
ATGTCTAATTCAAAGGACGAGAAATCACAAGATGCAGCTGATAGAATCAAGGCTGCAACACTCACTGCTGCTAAAGGTCTAAGCCGTACACAAGCGGAGAGAGCAGCGGCTGCAGCAGCGAGAAACGTTAACGCTTATGGCCAGAAAGAAGAAGGTCCGAGTAGATGGCAGGAGAAAAGAGAATTAAAGAGGCAGATGTATTTGATGAGTACTGAGAAAGCTGTCAGGCTTGGTGAAAGGAAAGATAAAACAATGTCAGCTTCAGCCGTGGGAAGCAGTGCTTCGGCGGCTTCACAGTGTCAGAAATGTTTCCAAGCTGGGCATTGGACTTATGAGTGTAAGAATGAAAGGGTTTATATCTCGAGGCCTTCGAGAACTCAGCAGCTTAAGAATCCTAAACTGAGAACGAAGCCTTCTGTTGATGATCTTGATGGTAGTGATGATGATGATGAAGAAGAAAGGCCTGATGCAACTAATGGGAAAGCAGAAGTTGAGAAGCGATCTAAGAAGAGTAAGCGAAAGCATAGGTCAAAGTCTGATTCTGAAAGTGATAGTGAAGCCTCTGTGTTTGAAACAGATAGTGATGGCTCATCTGGAGAGAGTAGTTCAGAATACAGTTCATCGTCGGACTCAGAGGACGAAAGGAGGAGGAGAAGAAAGGCCAAGAAGAGCAAGAAGAAGCAAAAGCAGAGGAAAGAAAGGCGAAGAAGGTACAGCTCTTCTTCATCGGAGTCATCTGAGTCAGAATCAGCTTCGGACTCAGATTCTGATGAAGATAGAAGCAGAAGAAAGAAGAAGAGCAAGAGGCACAGCAACAAGCGTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC_3

Protein Analysis

275

Amino Acids

31.09

Weight (kDa)

9.77

Isoelectric Point (pI)

83.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_3 PF13917 95 - 132 2.8e-22 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 95, 107, 287
AclI AACGTT 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 3 cut(s) 88, 211, 713
AflII CTTAAG 1 cut(s) 386
AgsI TTSAA 2 cut(s) 12, 572
AluBI AGCT 7 cut(s) 38, 221, 260, 317, 385, 717, 752
AluI AGCT 7 cut(s) 38, 221, 260, 317, 385, 717, 752
AlwNI CAGNNNCTG 2 cut(s) 110, 767
Ama87I CYCGRG 1 cut(s) 361
AoxI GGCC 4 cut(s) 139, 365, 461, 660
ApeKI GCWGC 8 cut(s) 35, 53, 68, 104, 110, 113, 116, 382
Asp700I GAANNNNTTC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 361
AvaII GGWCC 1 cut(s) 155
BalI TGGCCA 1 cut(s) 141
BbvI GCAGC 8 cut(s) 40, 47, 55, 97, 116, 125, 128, 394
BccI CCATC 3 cut(s) 159, 425, 578
BceAI ACGGC 2 cut(s) 69, 251
BfmI CTRYAG 1 cut(s) 111
BfrI CTTAAG 1 cut(s) 386
BmcAI AGTACT 1 cut(s) 211
Bme18I GGWCC 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 155
BmsI GCATC 2 cut(s) 22, 457
BpmI CTGGAG 1 cut(s) 615
BsaJI CCNNGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 267
BseMII CTCAG 6 cut(s) 204, 392, 392, 645, 729, 774
BseRI GAGGAG 2 cut(s) 661, 664
BseXI GCAGC 8 cut(s) 40, 47, 55, 97, 116, 125, 128, 394
BseYI CCCAGC 1 cut(s) 317
BshFI GGCC 4 cut(s) 141, 367, 463, 662
BsiHKCI CYCGRG 1 cut(s) 361
BsnI GGCC 4 cut(s) 141, 367, 463, 662
BsoBI CYCGRG 1 cut(s) 361
Bsp143I GATC 2 cut(s) 424, 500
BspACI CCGC 3 cut(s) 95, 107, 287
BspANI GGCC 4 cut(s) 141, 367, 463, 662
BspCNI CTCAG 6 cut(s) 205, 391, 393, 644, 730, 773
BspMAI CTGCAG 1 cut(s) 115
BspQI GCTCTTC 3 cut(s) 662, 724, 791
BspTI CTTAAG 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 2 cut(s) 424, 500
Bst4CI ACNGT 2 cut(s) 297, 617
Bst6I CTCTTC 4 cut(s) 503, 662, 724, 791
BstAFI CTTAAG 1 cut(s) 386
BstAPI GCANNNNNTGC 1 cut(s) 110
BstDEI CTNAG 8 cut(s) 80, 213, 378, 401, 504, 631, 738, 760
BstDSI CCRYGG 1 cut(s) 267
BstKTI GATC 2 cut(s) 427, 503
BstMBI GATC 2 cut(s) 424, 500
BstMWI GCNNNNNNNGC 5 cut(s) 101, 110, 113, 116, 287
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 8 cut(s) 40, 47, 55, 97, 116, 125, 128, 394
BsuRI GGCC 4 cut(s) 141, 367, 463, 662
BtgI CCRYGG 1 cut(s) 267
BtsI GCAGTG 2 cut(s) 63, 283
BtsIMutI CAGTG 3 cut(s) 63, 283, 302
CaiI CAGNNNCTG 2 cut(s) 110, 767
Cfr13I GGNCC 1 cut(s) 155
CseI GACGC 1 cut(s) 809
Csp6I GTAC 3 cut(s) 87, 210, 712
CviQI GTAC 3 cut(s) 87, 210, 712
DdeI CTNAG 8 cut(s) 80, 213, 378, 401, 504, 631, 738, 760
DpnI GATC 2 cut(s) 426, 502
DpnII GATC 2 cut(s) 424, 500
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 4 cut(s) 503, 662, 724, 791
EarI CTCTTC 4 cut(s) 503, 662, 724, 791
Eco147I AGGCCT 2 cut(s) 367, 463
Eco47I GGWCC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 361
FaiI YATR 4 cut(s) 138, 333, 357, 525
FalI AAGNNNNNCTT 2 cut(s) 265, 297
GsaI CCCAGC 1 cut(s) 321
GsuI CTGGAG 1 cut(s) 615
HaeIII GGCC 4 cut(s) 141, 367, 463, 662
HgaI GACGC 1 cut(s) 809
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 9 cut(s) 45, 391, 539, 629, 731, 740, 746, 758, 764
HpaI GTTAAC 1 cut(s) 130
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 89, 130
Hpy188III TCNNGA 4 cut(s) 361, 372, 428, 594
Hpy8I GTNNAC 2 cut(s) 89, 130
Hpy99I CGWCG 2 cut(s) 628, 825
HpyAV CCTTC 4 cut(s) 146, 378, 423, 702
HpyCH4III ACNGT 2 cut(s) 297, 617
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 4 cut(s) 35, 56, 113, 470
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 110, 113, 116, 287
HpyF3I CTNAG 8 cut(s) 80, 213, 378, 401, 504, 631, 738, 760
HpySE526I ACGT 1 cut(s) 126
KspAI GTTAAC 1 cut(s) 130
Kzo9I GATC 2 cut(s) 424, 500
LguI GCTCTTC 3 cut(s) 662, 724, 791
LpnPI CCDG 6 cut(s) 155, 155, 211, 303, 477, 579
Lsp1109I GCAGC 8 cut(s) 40, 47, 55, 97, 116, 125, 128, 394
LweI GCATC 2 cut(s) 22, 457
MaeII ACGT 1 cut(s) 126
MalI GATC 2 cut(s) 426, 502
MboI GATC 2 cut(s) 424, 500
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 2 cut(s) 7, 182
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 4 cut(s) 623, 740, 749, 752
MmeI TCCRAC 1 cut(s) 606
MnlI CCTC 8 cut(s) 183, 357, 571, 628, 639, 642, 684, 798
Mox20I TGGCCA 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 308
MscI TGGCCA 1 cut(s) 141
MseI TTAA 3 cut(s) 129, 185, 387
Msp20I TGGCCA 1 cut(s) 141
MspA1I CMGCKG 2 cut(s) 38, 107
MspCI CTTAAG 1 cut(s) 386
MwoI GCNNNNNNNGC 5 cut(s) 101, 110, 113, 116, 287
NdeII GATC 2 cut(s) 424, 500
PaeR7I CTCGAG 1 cut(s) 361
PceI AGGCCT 2 cut(s) 367, 463
PciSI GCTCTTC 3 cut(s) 662, 724, 791
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 5 cut(s) 45, 391, 539, 746, 764
PleI GAGTC 4 cut(s) 623, 739, 748, 752
PpsI GAGTC 4 cut(s) 623, 739, 748, 752
Psp1406I AACGTT 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 317
PspPI GGNCC 1 cut(s) 155
PstI CTGCAG 1 cut(s) 115
PstNI CAGNNNCTG 2 cut(s) 110, 767
PvuII CAGCTG 1 cut(s) 38
RsaI GTAC 3 cut(s) 88, 211, 713
RsaNI GTAC 3 cut(s) 87, 210, 712
SapI GCTCTTC 3 cut(s) 662, 724, 791
SaqAI TTAA 3 cut(s) 129, 185, 387
Sau3AI GATC 2 cut(s) 424, 500
Sau96I GGNCC 1 cut(s) 155
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 4 cut(s) 623, 740, 749, 752
SfaNI GCATC 2 cut(s) 22, 457
SfcI CTRYAG 1 cut(s) 111
Sfr274I CTCGAG 1 cut(s) 361
SinI GGWCC 1 cut(s) 155
SlaI CTCGAG 1 cut(s) 361
SmlI CTYRAG 2 cut(s) 361, 386
SmoI CTYRAG 2 cut(s) 361, 386
Sse9I AATT 2 cut(s) 7, 182
SseBI AGGCCT 2 cut(s) 367, 463
SsiI CCGC 3 cut(s) 95, 107, 287
StuI AGGCCT 2 cut(s) 367, 463
TaaI ACNGT 2 cut(s) 297, 617
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 362, 371
TasI AATT 2 cut(s) 7, 182
TatI WGTACW 1 cut(s) 209
TauI GCSGC 2 cut(s) 110, 290
TfiI GAWTC 5 cut(s) 45, 391, 539, 746, 764
Tru1I TTAA 3 cut(s) 129, 185, 387
Tru9I TTAA 3 cut(s) 129, 185, 387
TscAI CASTG 3 cut(s) 70, 283, 302
TseI GCWGC 8 cut(s) 35, 53, 68, 104, 110, 113, 116, 382
TspDTI ATGAA 5 cut(s) 360, 465, 609, 714, 786
TspRI CASTG 3 cut(s) 70, 283, 302
Vha464I CTTAAG 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 155
XhoI CTCGAG 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 308
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.