Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002603.1

Orthogroup ID

OG0007741

Physical Location & Seq

Genomic Coordinates Reverse (-)

80719 .. 81507

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002603.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atgtcgagtaagaaagaagagaaggctcaggctgcagcagaaaggatcaaggctcaggccttgagtgctgccaaaggtcttagtcgagctcaggctgaaagggctgctgctgctgctgcccgaaatgttaatgcttatggtcagaaggaagaaggacccagcagatggcaggagaaaagggaagccaagagacagatgtatttgatgagtactgaaaaggcagtgagactgggtgaaaggaaagacctgaaggctaatgtatctactgttggtagtgcagcttcacaatgccagaagtgtttccaacctgggcattggacatatgaatgtaagaatgaacgtgtatacatctcaagaccctctaggactcagcaactcaaaaatcctaaactgaagatgaaggtgtcactatcctatgatctggatggtccagatccagatactaaaaaggaagagaagagtgaaaagctgtcgaagaaaagcaagaggaaacataggcgaggttctgattctgacagtgatagtgaagcttcagtttttgagactgatagtggggaatcatcagttacaggttctgattattcttctgacgggagtagttcagattacagttcatcatctgattccgaggaggagagaaggcgccggaggaagaagaagaagcaaaagacaagacgtaaaagatactcctcatcatctgaatcttctgattcagaatcagcttctgaatctgattctgatgaaaggagaagccggaagaagagcaagaggcacagcagaaagcgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC_3

Protein Analysis

262

Amino Acids

29.57

Weight (kDa)

9.9

Isoelectric Point (pI)

76.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49400
fragaria_vesca	FvH4_4g19461
malus_domestica	MD13G1156300.v1.1 MD16G1157200.v1.1
prunus_persica	Prupe.1G073200_v2.0.a1 Prupe.1G073200_v2.0.a1 Prupe.1G073200_v2.0.a1 Prupe.1G122100_v2.0.a1
pyrus_communis	pycom13g13370 pycom16g13220
rosa_chinensis	RchiOBHm_Chr4g0424571
rosa_laevigata	RLG00000007456
rosa_multiflora	Rmu_sc0002603.1_g000020 Rmu_sc0003819.1_g000023 Rmu_sc0003942.1_g000010
rosa_roxburghii	Rroxscaffold_2G00147270 Rroxscaffold_5G00366490
rosa_rugosa	Rorug02G0043100 Rorug04G0198000
rosa_samantha	Rh4AG254600 Rh4BG260100 Rh4CG271500 Rh4DG254800
rosa_wichuraiana	Rw4G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	642
AccB7I	CCANNNNNTGG	1 cut(s)	165
AccI	GTMKAC	1 cut(s)	345
AclWI	GGATC	2 cut(s)	53, 428
AcuI	CTGAAG	3 cut(s)	269, 413, 516
AcyI	GRCGYC	1 cut(s)	643
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	165
AflIII	ACRYGT	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	5 cut(s)	89, 281, 469, 530, 722
AluI	AGCT	5 cut(s)	89, 281, 469, 530, 722
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	3 cut(s)	184, 220, 536
AlwI	GGATC	2 cut(s)	53, 428
AlwNI	CAGNNNCTG	2 cut(s)	575, 725
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	9 cut(s)	32, 35, 68, 104, 107, 110, 113, 116, 278
Asp700I	GAANNNNTTC	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	2 cut(s)	155, 428
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	155, 428
BanI	GGYRCC	1 cut(s)	642
BanII	GRGCYC	1 cut(s)	91
BarI	GAAGNNNNNNTAC	2 cut(s)	265, 297
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	9 cut(s)	19, 47, 55, 91, 94, 97, 100, 103, 290
BccI	CCATC	2 cut(s)	159, 419
BciT130I	CCWGG	1 cut(s)	309
BcoDI	GTCTC	3 cut(s)	184, 220, 536
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	646
BisI	GCNGC	9 cut(s)	33, 36, 69, 105, 108, 111, 114, 117, 279
BlsI	GCNGC	9 cut(s)	34, 37, 70, 106, 109, 112, 115, 118, 280
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	2 cut(s)	155, 428
BmgT120I	GGNCC	2 cut(s)	155, 428
BmiI	GGNNCC	2 cut(s)	157, 644
BmrFI	CCNGG	1 cut(s)	309
BmrI	ACTGGG	1 cut(s)	239
BmuI	ACTGGG	1 cut(s)	239
Bpu10I	CCTNAGC	3 cut(s)	27, 54, 90
BpuEI	CTTGAG	2 cut(s)	82, 337
BsaHI	GRCGYC	1 cut(s)	643
BsaJI	CCNNGG	2 cut(s)	308, 627
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	308, 627
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	4 cut(s)	41, 68, 104, 383
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	3 cut(s)	644, 647, 679
BseXI	GCAGC	9 cut(s)	19, 47, 55, 91, 94, 97, 100, 103, 290
BseYI	CCCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	642
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	646, 754
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	3 cut(s)	184, 220, 536
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	3 cut(s)	45, 418, 433
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	4 cut(s)	40, 67, 103, 382
BspLI	GGNNCC	2 cut(s)	157, 644
BspMAI	CTGCAG	1 cut(s)	37
BspPI	GGATC	2 cut(s)	53, 428
BspQI	GCTCTTC	1 cut(s)	755
BspT107I	GGYRCC	1 cut(s)	642
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	2 cut(s)	308, 627
BssMI	GATC	3 cut(s)	45, 418, 433
BssNAI	GTATAC	1 cut(s)	346
BssNI	GRCGYC	1 cut(s)	643
Bst1107I	GTATAC	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	3 cut(s)	268, 518, 611
Bst6I	CTCTTC	4 cut(s)	12, 447, 452, 755
BstACI	GRCGYC	1 cut(s)	643
BstDEI	CTNAG	5 cut(s)	27, 54, 80, 90, 369
BstF5I	GGATG	1 cut(s)	430
BstH2I	RGCGCY	1 cut(s)	646
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	3 cut(s)	48, 421, 436
BstMAI	GTCTC	3 cut(s)	184, 220, 536
BstMBI	GATC	3 cut(s)	45, 418, 433
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 65, 101, 110, 113, 116
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	9 cut(s)	19, 47, 55, 91, 94, 97, 100, 103, 290
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BstZ17I	GTATAC	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	228, 523
CaiI	CAGNNNCTG	2 cut(s)	575, 725
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	2 cut(s)	155, 428
Csp6I	GTAC	1 cut(s)	210
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	5 cut(s)	27, 54, 80, 90, 369
DinI	GGCGCC	1 cut(s)	644
DpnI	GATC	3 cut(s)	47, 420, 435
DpnII	GATC	3 cut(s)	45, 418, 433
Eam1104I	CTCTTC	4 cut(s)	12, 447, 452, 755
EarI	CTCTTC	4 cut(s)	12, 447, 452, 755
Ecl136II	GAGCTC	1 cut(s)	89
Eco147I	AGGCCT	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	155, 428
Eco53kI	GAGCTC	1 cut(s)	89
Eco57I	CTGAAG	3 cut(s)	269, 413, 516
EcoICRI	GAGCTC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	91
EgeI	GGCGCC	1 cut(s)	644
EheI	GGCGCC	1 cut(s)	644
FaiI	YATR	6 cut(s)	138, 322, 324, 346, 417, 495
FauNDI	CATATG	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	9 cut(s)	33, 36, 69, 105, 108, 111, 114, 117, 279
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	9 cut(s)	33, 36, 69, 105, 108, 111, 114, 117, 279
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	9 cut(s)	33, 36, 69, 105, 108, 111, 114, 117, 279
GsaI	CCCAGC	1 cut(s)	162
HaeII	RGCGCY	1 cut(s)	646
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	2 cut(s)	646, 754
HhaI	GCGC	1 cut(s)	645
Hin1I	GRCGYC	1 cut(s)	643
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HindIII	AAGCTT	1 cut(s)	528
HinfI	GANTC	9 cut(s)	367, 509, 557, 623, 701, 710, 716, 728, 734
HpaII	CCGG	2 cut(s)	646, 754
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188III	TCNNGA	4 cut(s)	354, 422, 431, 437
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	6 cut(s)	16, 139, 146, 244, 394, 633
HpyCH4III	ACNGT	3 cut(s)	268, 518, 611
HpyCH4IV	ACGT	2 cut(s)	340, 676
HpyCH4V	TGCA	2 cut(s)	35, 278
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 65, 101, 110, 113, 116
HpyF3I	CTNAG	5 cut(s)	27, 54, 80, 90, 369
HpySE526I	ACGT	2 cut(s)	340, 676
Hsp92I	GRCGYC	1 cut(s)	643
HspAI	GCGC	1 cut(s)	643
KasI	GGCGCC	1 cut(s)	642
Kzo9I	GATC	3 cut(s)	45, 418, 433
LguI	GCTCTTC	1 cut(s)	755
Lsp1109I	GCAGC	9 cut(s)	19, 47, 55, 91, 94, 97, 100, 103, 290
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	2 cut(s)	340, 676
MaeIII	GTNAC	2 cut(s)	405, 565
MalI	GATC	3 cut(s)	47, 420, 435
MboI	GATC	3 cut(s)	45, 418, 433
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	91
Mly113I	GGCGCC	1 cut(s)	643
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	8 cut(s)	370, 480, 494, 622, 625, 642, 700, 762
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	2 cut(s)	129, 787
MslI	CAYNNNNRTG	1 cut(s)	325
MspI	CCGG	2 cut(s)	646, 754
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	6 cut(s)	32, 65, 101, 110, 113, 116
NarI	GGCGCC	1 cut(s)	643
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	3 cut(s)	45, 418, 433
NlaIV	GGNNCC	2 cut(s)	157, 644
NmuCI	GTSAC	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	755
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	8 cut(s)	509, 557, 623, 701, 710, 716, 728, 734
PflMI	CCANNNNNTGG	1 cut(s)	165
PkrI	GCNGC	9 cut(s)	34, 37, 70, 106, 109, 112, 115, 118, 280
PleI	GAGTC	1 cut(s)	361
PluTI	GGCGCC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	361
PpuMI	RGGWCCY	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	307
PspFI	CCCAGC	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	157, 644
PspPI	GGNCC	2 cut(s)	155, 428
PspPPI	RGGWCCY	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	37
PstNI	CAGNNNCTG	2 cut(s)	575, 725
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	755
SaqAI	TTAA	2 cut(s)	129, 787
SatI	GCNGC	9 cut(s)	33, 36, 69, 105, 108, 111, 114, 117, 279
Sau3AI	GATC	3 cut(s)	45, 418, 433
Sau96I	GGNCC	2 cut(s)	155, 428
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	91
SfcI	CTRYAG	1 cut(s)	33
SfoI	GGCGCC	1 cut(s)	644
SinI	GGWCC	2 cut(s)	155, 428
SmiMI	CAYNNNNRTG	1 cut(s)	325
SmlI	CTYRAG	2 cut(s)	61, 352
SmoI	CTYRAG	2 cut(s)	61, 352
SseBI	AGGCCT	1 cut(s)	59
SspDI	GGCGCC	1 cut(s)	642
SspMI	CTAG	1 cut(s)	363
SstI	GAGCTC	1 cut(s)	91
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	3 cut(s)	268, 518, 611
TaiI	ACGT	2 cut(s)	343, 679
TaqI	TCGA	3 cut(s)	5, 85, 473
TatI	WGTACW	1 cut(s)	209
TfiI	GAWTC	8 cut(s)	509, 557, 623, 701, 710, 716, 728, 734
Tru1I	TTAA	2 cut(s)	129, 787
Tru9I	TTAA	2 cut(s)	129, 787
TscAI	CASTG	2 cut(s)	228, 523
TseFI	GTSAC	1 cut(s)	405
TseI	GCWGC	9 cut(s)	32, 35, 68, 104, 107, 110, 113, 116, 278
Tsp45I	GTSAC	1 cut(s)	405
TspDTI	ATGAA	5 cut(s)	339, 351, 413, 603, 756
TspRI	CASTG	2 cut(s)	228, 523
Van91I	CCANNNNNTGG	1 cut(s)	165
VpaK11BI	GGWCC	2 cut(s)	155, 428
XmiI	GTMKAC	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.