Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007741

Physical Location & Seq

Genomic Coordinates Reverse (-)

9586699 .. 9589044

Gene Structure 2346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G122100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCGGGTAAAAAAGAAGAGAAAGCTCAGGCTGCTGCTGAAAGGATCAAGGCTGCAGCCTTGAGTGCTGCAAAAGGTCTTAGTCGAGCTCAGGCTGAAAGGGCAGCTGCTTCTGCTGCACGCAACGTTAATGCTTATGGGCAGAAGGAAGAAGGACCCAGCAGATGGCAGGAGAAAAGGGAAGCGAAGAGACAGATGTATTTGATGAGTACTGAAAAGGCAGTAAGATTGGGTGAACGAAAAGACCTTAAGTCGAATGTAATTACCATTAGTGGTGCAGCTTCACAATGCCAGAAGTGTTTCCAGCCCGGGCATTGGACATACGAATGCAAGAATGAACGTGTTTACATCTCGCGACCGTCTAGGACCCAACAACTCAAGAATCCTAAACTGAAGATGAAGGTCTCAGTATCTTACGATTTGGATATTCCAGATATTAAGGAAGAGAAGGGTGAACAGCAGTCAAAGAAAAGCAAGAGGAAGCATCGAGCGGCTTCTGATTCTGGCAGTGATAGTGAGGCTTCAGTTTTTGACACTGATAGTGGGGCATCATCAATTACAGGATCTGATTATTCTTCAGAGGAGAGTAGTTCAGATTACAGTTCATCTTCTGATTCAGAGGAGGAAAGGAGGCACAGAAGGAAGAAAAAGAAGCAAAAGATGGGAAGGCGGCAGAGAAGGAACAGTTCATCATCTGAATCTTCTGAGACAGAGTCAGTTTCCGAATCTGATTCTGATGATAGGAGGAGCCGGAGGAAGAGCAGGACACACAGCAGAAAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC_3

Protein Analysis

262

Amino Acids

29.32

Weight (kDa)

9.8

Isoelectric Point (pI)

77.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49400
fragaria_vesca	FvH4_4g19461
malus_domestica	MD13G1156300.v1.1 MD16G1157200.v1.1
prunus_persica	Prupe.1G073200_v2.0.a1 Prupe.1G073200_v2.0.a1 Prupe.1G073200_v2.0.a1 Prupe.1G122100_v2.0.a1
pyrus_communis	pycom13g13370 pycom16g13220
rosa_chinensis	RchiOBHm_Chr4g0424571
rosa_laevigata	RLG00000007456
rosa_multiflora	Rmu_sc0002603.1_g000020 Rmu_sc0003819.1_g000023 Rmu_sc0003942.1_g000010
rosa_roxburghii	Rroxscaffold_2G00147270 Rroxscaffold_5G00366490
rosa_rugosa	Rorug02G0043100 Rorug04G0198000
rosa_samantha	Rh4AG254600 Rh4BG260100 Rh4CG271500 Rh4DG254800
rosa_wichuraiana	Rw4G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	165
AccBSI	CCGCTC	1 cut(s)	491
AccII	CGCG	1 cut(s)	355
AciI	CCGC	2 cut(s)	491, 670
AclI	AACGTT	1 cut(s)	126
AclWI	GGATC	2 cut(s)	53, 571
AcuI	CTGAAG	3 cut(s)	413, 507, 561
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	2 cut(s)	165, 315
AflII	CTTAAG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	340
AhdI	GACNNNNNGTC	1 cut(s)	250
AluBI	AGCT	4 cut(s)	26, 89, 107, 281
AluI	AGCT	4 cut(s)	26, 89, 107, 281
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	3 cut(s)	184, 409, 701
AlwI	GGATC	2 cut(s)	53, 571
AlwNI	CAGNNNCTG	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	308
ApeKI	GCWGC	9 cut(s)	32, 35, 53, 56, 68, 104, 107, 116, 278
Asp700I	GAANNNNTTC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	155, 366
AsuC2I	CCSGG	2 cut(s)	309, 310
AsuHPI	GGTGA	2 cut(s)	245, 464
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	2 cut(s)	155, 366
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	9 cut(s)	19, 22, 40, 55, 68, 94, 103, 116, 290
BccI	CCATC	2 cut(s)	159, 655
BcnI	CCSGG	2 cut(s)	309, 310
BcoDI	GTCTC	3 cut(s)	184, 409, 701
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	54
BfrI	CTTAAG	1 cut(s)	248
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	2 cut(s)	309, 310
Bme18I	GGWCC	2 cut(s)	155, 366
BmeRI	GACNNNNNGTC	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	155, 366
BmiI	GGNNCC	3 cut(s)	157, 368, 749
BmrFI	CCNGG	2 cut(s)	309, 310
BmsI	GCATC	2 cut(s)	493, 557
Bpu10I	CCTNAGC	2 cut(s)	27, 90
BpuEI	CTTGAG	2 cut(s)	82, 362
BpuMI	CCSGG	2 cut(s)	309, 310
BsaI	GGTCTC	1 cut(s)	409
BsaJI	CCNNGG	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 315
BseDI	CCNNGG	1 cut(s)	308
BseLI	CCNNNNNNNGG	2 cut(s)	165, 315
BseMII	CTCAG	4 cut(s)	41, 104, 420, 696
BseRI	GAGGAG	3 cut(s)	596, 635, 760
BseXI	GCAGC	9 cut(s)	19, 22, 40, 55, 68, 94, 103, 116, 290
BseYI	CCCAGC	1 cut(s)	158
BsgI	GTGCAG	2 cut(s)	102, 297
Bsh1236I	CGCG	1 cut(s)	355
Bsh1285I	CGRYCG	1 cut(s)	359
BsiEI	CGRYCG	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	309, 751
BslI	CCNNNNNNNGG	2 cut(s)	165, 315
BsmAI	GTCTC	3 cut(s)	184, 409, 701
BsmI	GAATGC	1 cut(s)	332
Bso31I	GGTCTC	1 cut(s)	409
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	45, 563
Bsp68I	TCGCGA	1 cut(s)	355
BspACI	CCGC	2 cut(s)	491, 670
BspCNI	CTCAG	4 cut(s)	40, 103, 419, 697
BspFNI	CGCG	1 cut(s)	355
BspLI	GGNNCC	3 cut(s)	157, 368, 749
BspMAI	CTGCAG	1 cut(s)	58
BspPI	GGATC	2 cut(s)	53, 571
BspQI	GCTCTTC	1 cut(s)	752
BspTI	CTTAAG	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	409
BsrBI	CCGCTC	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	2 cut(s)	45, 563
Bst4CI	ACNGT	3 cut(s)	360, 602, 686
Bst6I	CTCTTC	4 cut(s)	12, 182, 438, 752
BstAFI	CTTAAG	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	5 cut(s)	27, 80, 90, 406, 705
BstFNI	CGCG	1 cut(s)	355
BstKTI	GATC	2 cut(s)	48, 566
BstMAI	GTCTC	3 cut(s)	184, 409, 701
BstMBI	GATC	2 cut(s)	45, 563
BstMCI	CGRYCG	1 cut(s)	359
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 65, 101, 113, 116
BstSCI	CCNGG	2 cut(s)	307, 308
BstSFI	CTRYAG	1 cut(s)	54
BstUI	CGCG	1 cut(s)	355
BstV1I	GCAGC	9 cut(s)	19, 22, 40, 55, 68, 94, 103, 116, 290
BstX2I	RGATCY	1 cut(s)	563
BstYI	RGATCY	1 cut(s)	563
BtsI	GCAGTG	1 cut(s)	514
BtsIMutI	CAGTG	2 cut(s)	514, 534
BtuMI	TCGCGA	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	566
Cfr13I	GGNCC	2 cut(s)	155, 366
Cfr9I	CCCGGG	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	210
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	5 cut(s)	27, 80, 90, 406, 705
DpnI	GATC	2 cut(s)	47, 565
DpnII	GATC	2 cut(s)	45, 563
DriI	GACNNNNNGTC	1 cut(s)	250
Eam1104I	CTCTTC	4 cut(s)	12, 182, 438, 752
Eam1105I	GACNNNNNGTC	1 cut(s)	250
EarI	CTCTTC	4 cut(s)	12, 182, 438, 752
Ecl136II	GAGCTC	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	91
Eco31I	GGTCTC	1 cut(s)	409
Eco47I	GGWCC	2 cut(s)	155, 366
Eco53kI	GAGCTC	1 cut(s)	89
Eco57I	CTGAAG	3 cut(s)	413, 507, 561
Eco88I	CYCGRG	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	89
EcoO109I	RGGNCCY	2 cut(s)	155, 366
EcoT38I	GRGCYC	1 cut(s)	91
FaiI	YATR	2 cut(s)	138, 322
FriOI	GRGCYC	1 cut(s)	91
FspBI	CTAG	1 cut(s)	363
GsaI	CCCAGC	1 cut(s)	162
HapII	CCGG	2 cut(s)	309, 751
HinfI	GANTC	7 cut(s)	382, 500, 614, 698, 713, 725, 731
HpaII	CCGG	2 cut(s)	309, 751
HphI	GGTGA	2 cut(s)	245, 464
Hpy166II	GTNNAC	3 cut(s)	236, 346, 455
Hpy188III	TCNNGA	3 cut(s)	354, 379, 431
Hpy8I	GTNNAC	3 cut(s)	236, 346, 455
HpyAV	CCTTC	7 cut(s)	139, 146, 394, 442, 633, 660, 672
HpyCH4III	ACNGT	3 cut(s)	360, 602, 686
HpyCH4IV	ACGT	2 cut(s)	126, 340
HpyCH4V	TGCA	5 cut(s)	56, 71, 119, 278, 330
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 65, 101, 113, 116
HpyF3I	CTNAG	5 cut(s)	27, 80, 90, 406, 705
HpySE526I	ACGT	2 cut(s)	126, 340
Kzo9I	GATC	2 cut(s)	45, 563
LguI	GCTCTTC	1 cut(s)	752
LmnI	GCTCC	1 cut(s)	747
Lsp1109I	GCAGC	9 cut(s)	19, 22, 40, 55, 68, 94, 103, 116, 290
LweI	GCATC	2 cut(s)	493, 557
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	2 cut(s)	126, 340
MalI	GATC	2 cut(s)	47, 565
MbiI	CCGCTC	1 cut(s)	491
MboI	GATC	2 cut(s)	45, 563
MflI	RGATCY	1 cut(s)	563
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	2 cut(s)	261, 555
MlyI	GAGTC	1 cut(s)	722
MnlI	CCTC	8 cut(s)	471, 511, 574, 613, 616, 624, 738, 747
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	4 cut(s)	129, 249, 438, 784
MslI	CAYNNNNRTG	1 cut(s)	325
MspA1I	CMGCKG	1 cut(s)	107
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	2 cut(s)	309, 751
MspR9I	CCNGG	2 cut(s)	309, 310
Mva1269I	GAATGC	1 cut(s)	332
MvnI	CGCG	1 cut(s)	355
MwoI	GCNNNNNNNGC	5 cut(s)	32, 65, 101, 113, 116
NciI	CCSGG	2 cut(s)	309, 310
NdeII	GATC	2 cut(s)	45, 563
NlaIV	GGNNCC	3 cut(s)	157, 368, 749
NruI	TCGCGA	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	752
PctI	GAATGC	1 cut(s)	332
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	6 cut(s)	382, 500, 614, 698, 725, 731
PflFI	GACNNNGTC	1 cut(s)	712
PflMI	CCANNNNNTGG	1 cut(s)	165
PleI	GAGTC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	721
PpuMI	RGGWCCY	2 cut(s)	155, 366
Psp124BI	GAGCTC	1 cut(s)	91
Psp1406I	AACGTT	1 cut(s)	126
Psp5II	RGGWCCY	2 cut(s)	155, 366
PspFI	CCCAGC	1 cut(s)	158
PspN4I	GGNNCC	3 cut(s)	157, 368, 749
PspPI	GGNCC	2 cut(s)	155, 366
PspPPI	RGGWCCY	2 cut(s)	155, 366
PstI	CTGCAG	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	563
PsyI	GACNNNGTC	1 cut(s)	712
PvuII	CAGCTG	1 cut(s)	107
RruI	TCGCGA	1 cut(s)	355
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	752
SaqAI	TTAA	4 cut(s)	129, 249, 438, 784
Sau3AI	GATC	2 cut(s)	45, 563
Sau96I	GGNCC	2 cut(s)	155, 366
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	1 cut(s)	722
ScrFI	CCNGG	2 cut(s)	309, 310
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	9 cut(s)	28, 79, 91, 109, 129, 249, 283, 343, 405
SfaNI	GCATC	2 cut(s)	493, 557
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	2 cut(s)	155, 366
SmaI	CCCGGG	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	325
SmlI	CTYRAG	3 cut(s)	61, 248, 377
SmoI	CTYRAG	3 cut(s)	61, 248, 377
SrfI	GCCCGGGC	1 cut(s)	310
Sse9I	AATT	2 cut(s)	261, 555
SsiI	CCGC	2 cut(s)	491, 670
SspMI	CTAG	1 cut(s)	363
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	2 cut(s)	307, 308
TaaI	ACNGT	3 cut(s)	360, 602, 686
TaiI	ACGT	2 cut(s)	129, 343
TaqI	TCGA	3 cut(s)	85, 254, 487
TasI	AATT	2 cut(s)	261, 555
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	2 cut(s)	494, 673
TfiI	GAWTC	6 cut(s)	382, 500, 614, 698, 725, 731
Tru1I	TTAA	4 cut(s)	129, 249, 438, 784
Tru9I	TTAA	4 cut(s)	129, 249, 438, 784
TscAI	CASTG	2 cut(s)	514, 541
TseI	GCWGC	9 cut(s)	32, 35, 53, 56, 68, 104, 107, 116, 278
TspDTI	ATGAA	4 cut(s)	351, 413, 594, 678
TspMI	CCCGGG	1 cut(s)	308
TspRI	CASTG	2 cut(s)	514, 541
Tth111I	GACNNNGTC	1 cut(s)	712
Van91I	CCANNNNNTGG	1 cut(s)	165
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	2 cut(s)	155, 366
XmaI	CCCGGG	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.