Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007741

Physical Location & Seq

Genomic Coordinates Reverse (-)

23114559 .. 23116579

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g19461.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCGAGTAAGAAAGAAGAGAAGGCTCAGGCTGCAGCAGAAAGGATCAAGGCTCAGGCCTTGAGTGCTGCAAAAGGTCTTAGTCGAGCTCAGGCTGAAAGGGCGGCTGCTGCTGCTGCACGAAATGTTAACGCTTATGGGCAGAAGGAAGAAGGACCCAGCAGATGGCAGGAGAAAAGGGAAGCCAAGAGACAGATGTATTTGATGAGTACTGAAAAAGCAGTGAGACTGGGTGAGAGGAAAGACCTGAAGGCAAATATATCTACTGTTGGTAGTGCAGCTTCACAATGCCAGAAGTGTTTCCAACCTGGGCATTGGACATATGAATGTAAGAATGAACGTGTTTATATCTCAAGGCCATCTAGGACTCAGCAACTGAAAAATCCTAAACTGAAGATGAAGGTGTCACTATCCTATGATCTGGATGTTGCGGATCCAGATACTAAAAAGGAAGAAAAGAGTGAAAAGTCATCGAAGAAAAGCAAGAGGAAACATAGGGGAGGTTCTGATTCTGGCAGTGATAGTGAAGCTTCAGTTTTTGAGACTGATAGTGGGGAATCATCAGTTACAGGTTCTGATTATTCTTCTGAAGGGAGTAGTTCAGATTACAGTTCATCATCTGATTCTGAGGAGGAGAGAAGGCGCAGGAGGAAGAAGAAGAAGCAAAAGATAAGGCGTAAAAGATACTCCTCATCATCTGAGTCTTCTGATTCAGGGTCTTCTGAATCTGATTCTGATGATAGGAGAAGCCGGAAGAAGAGCAAGAGGCACAGCAGAAAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC_3

Protein Analysis

262

Amino Acids

29.29

Weight (kDa)

9.94

Isoelectric Point (pI)

76.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC_3	PF13917	93 - 129	1.5e-22	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49400
fragaria_vesca	FvH4_4g19461
malus_domestica	MD13G1156300.v1.1 MD16G1157200.v1.1
prunus_persica	Prupe.1G073200_v2.0.a1 Prupe.1G073200_v2.0.a1 Prupe.1G073200_v2.0.a1 Prupe.1G122100_v2.0.a1
pyrus_communis	pycom13g13370 pycom16g13220
rosa_chinensis	RchiOBHm_Chr4g0424571
rosa_laevigata	RLG00000007456
rosa_multiflora	Rmu_sc0002603.1_g000020 Rmu_sc0003819.1_g000023 Rmu_sc0003942.1_g000010
rosa_roxburghii	Rroxscaffold_2G00147270 Rroxscaffold_5G00366490
rosa_rugosa	Rorug02G0043100 Rorug04G0198000
rosa_samantha	Rh4AG254600 Rh4BG260100 Rh4CG271500 Rh4DG254800
rosa_wichuraiana	Rw4G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	165
AciI	CCGC	2 cut(s)	104, 431
AclWI	GGATC	3 cut(s)	53, 428, 441
AcuI	CTGAAG	4 cut(s)	269, 413, 516, 609
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	165
AflIII	ACRYGT	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	3 cut(s)	89, 281, 530
AluI	AGCT	3 cut(s)	89, 281, 530
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	3 cut(s)	184, 220, 536
AlwI	GGATC	3 cut(s)	53, 428, 441
AlwNI	CAGNNNCTG	2 cut(s)	376, 575
AoxI	GGCC	2 cut(s)	57, 356
ApeKI	GCWGC	8 cut(s)	32, 35, 68, 107, 110, 113, 116, 278
Asp700I	GAANNNNTTC	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	91
BarI	GAAGNNNNNNTAC	2 cut(s)	265, 297
BbsI	GAAGAC	2 cut(s)	696, 711
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	8 cut(s)	19, 47, 55, 94, 97, 100, 103, 290
BccI	CCATC	2 cut(s)	159, 367
BciT130I	CCWGG	1 cut(s)	309
BcoDI	GTCTC	3 cut(s)	184, 220, 536
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	33
BisI	GCNGC	9 cut(s)	33, 36, 69, 105, 108, 111, 114, 117, 279
BlsI	GCNGC	9 cut(s)	34, 37, 70, 106, 109, 112, 115, 118, 280
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	2 cut(s)	157, 435
BmrFI	CCNGG	1 cut(s)	309
BmrI	ACTGGG	1 cut(s)	239
BmuI	ACTGGG	1 cut(s)	239
BpiI	GAAGAC	2 cut(s)	696, 711
Bpu10I	CCTNAGC	3 cut(s)	27, 54, 90
BpuEI	CTTGAG	2 cut(s)	82, 337
BsaJI	CCNNGG	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	6 cut(s)	41, 68, 104, 383, 618, 690
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	3 cut(s)	644, 647, 679
BseXI	GCAGC	8 cut(s)	19, 47, 55, 94, 97, 100, 103, 290
BseYI	CCCAGC	1 cut(s)	158
BsgI	GTGCAG	2 cut(s)	102, 297
BshFI	GGCC	2 cut(s)	59, 358
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	751
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	3 cut(s)	184, 220, 536
BsnI	GGCC	2 cut(s)	59, 358
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	3 cut(s)	45, 418, 433
BspACI	CCGC	2 cut(s)	104, 431
BspANI	GGCC	2 cut(s)	59, 358
BspCNI	CTCAG	6 cut(s)	40, 67, 103, 382, 619, 691
BspLI	GGNNCC	2 cut(s)	157, 435
BspMAI	CTGCAG	1 cut(s)	37
BspPI	GGATC	3 cut(s)	53, 428, 441
BspQI	GCTCTTC	1 cut(s)	752
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	3 cut(s)	45, 418, 433
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	268, 611
Bst6I	CTCTTC	2 cut(s)	12, 752
BstDEI	CTNAG	7 cut(s)	27, 54, 80, 90, 369, 627, 699
BstF5I	GGATG	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	3 cut(s)	48, 421, 436
BstMAI	GTCTC	3 cut(s)	184, 220, 536
BstMBI	GATC	3 cut(s)	45, 418, 433
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 65, 101, 110, 113, 116
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	8 cut(s)	19, 47, 55, 94, 97, 100, 103, 290
BstV2I	GAAGAC	2 cut(s)	696, 711
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	2 cut(s)	59, 358
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	2 cut(s)	228, 523
BtsIMutI	CAGTG	2 cut(s)	228, 523
CaiI	CAGNNNCTG	2 cut(s)	376, 575
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	210
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	7 cut(s)	27, 54, 80, 90, 369, 627, 699
DpnI	GATC	3 cut(s)	47, 420, 435
DpnII	GATC	3 cut(s)	45, 418, 433
Eam1104I	CTCTTC	2 cut(s)	12, 752
EarI	CTCTTC	2 cut(s)	12, 752
Ecl136II	GAGCTC	1 cut(s)	89
Eco147I	AGGCCT	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	89
Eco57I	CTGAAG	4 cut(s)	269, 413, 516, 609
EcoICRI	GAGCTC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	91
FaiI	YATR	7 cut(s)	138, 260, 322, 324, 348, 417, 495
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	9 cut(s)	33, 36, 69, 105, 108, 111, 114, 117, 279
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	9 cut(s)	33, 36, 69, 105, 108, 111, 114, 117, 279
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	9 cut(s)	33, 36, 69, 105, 108, 111, 114, 117, 279
GsaI	CCCAGC	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	59, 358
HapII	CCGG	1 cut(s)	751
HhaI	GCGC	1 cut(s)	645
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	528
HinfI	GANTC	8 cut(s)	367, 509, 557, 623, 701, 710, 725, 731
HpaI	GTTAAC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	751
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	422, 437
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	7 cut(s)	16, 139, 146, 244, 394, 584, 633
HpyCH4III	ACNGT	2 cut(s)	268, 611
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	4 cut(s)	35, 71, 119, 278
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 65, 101, 110, 113, 116
HpyF3I	CTNAG	7 cut(s)	27, 54, 80, 90, 369, 627, 699
HpySE526I	ACGT	1 cut(s)	340
HspAI	GCGC	1 cut(s)	643
KspAI	GTTAAC	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	45, 418, 433
LguI	GCTCTTC	1 cut(s)	752
Lsp1109I	GCAGC	8 cut(s)	19, 47, 55, 94, 97, 100, 103, 290
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	2 cut(s)	405, 565
MalI	GATC	3 cut(s)	47, 420, 435
MboI	GATC	3 cut(s)	45, 418, 433
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	91
MlyI	GAGTC	2 cut(s)	361, 710
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	8 cut(s)	231, 480, 494, 622, 625, 642, 700, 759
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	2 cut(s)	129, 784
MslI	CAYNNNNRTG	1 cut(s)	325
MspI	CCGG	1 cut(s)	751
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	6 cut(s)	32, 65, 101, 110, 113, 116
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	3 cut(s)	45, 418, 433
NlaIV	GGNNCC	2 cut(s)	157, 435
NmuCI	GTSAC	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	752
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	6 cut(s)	509, 557, 623, 710, 725, 731
PflMI	CCANNNNNTGG	1 cut(s)	165
PkrI	GCNGC	9 cut(s)	34, 37, 70, 106, 109, 112, 115, 118, 280
PleI	GAGTC	2 cut(s)	361, 709
PpsI	GAGTC	2 cut(s)	361, 709
PpuMI	RGGWCCY	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	307
PspFI	CCCAGC	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	157, 435
PspPI	GGNCC	1 cut(s)	155
PspPPI	RGGWCCY	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	37
PstNI	CAGNNNCTG	2 cut(s)	376, 575
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	752
SaqAI	TTAA	2 cut(s)	129, 784
SatI	GCNGC	9 cut(s)	33, 36, 69, 105, 108, 111, 114, 117, 279
Sau3AI	GATC	3 cut(s)	45, 418, 433
Sau96I	GGNCC	1 cut(s)	155
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	2 cut(s)	361, 710
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	91
SfcI	CTRYAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	325
SmlI	CTYRAG	2 cut(s)	61, 352
SmoI	CTYRAG	2 cut(s)	61, 352
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	2 cut(s)	104, 431
SspMI	CTAG	1 cut(s)	363
SstI	GAGCTC	1 cut(s)	91
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	2 cut(s)	268, 611
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	3 cut(s)	5, 85, 473
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	6 cut(s)	509, 557, 623, 710, 725, 731
Tru1I	TTAA	2 cut(s)	129, 784
Tru9I	TTAA	2 cut(s)	129, 784
TscAI	CASTG	2 cut(s)	228, 523
TseFI	GTSAC	1 cut(s)	405
TseI	GCWGC	8 cut(s)	32, 35, 68, 107, 110, 113, 116, 278
Tsp45I	GTSAC	1 cut(s)	405
TspDTI	ATGAA	4 cut(s)	339, 351, 413, 603
TspRI	CASTG	2 cut(s)	228, 523
Van91I	CCANNNNNTGG	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.