RchiOBHm_Chr4g0424571

Zinc finger CCHC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007741
Physical Location & Seq
Reverse (-)
50153400 .. 50155355
1956 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39383

Sequence Viewer

Length: 789 bp
ATGTCGAGTAAGAAAGAAGAGAAGGCTCAGGCTGCAGCAGAAAGGATCAAGGCTCAGGCCTTGAGTGCTGCCAAAGGTCTTAGTCGAGCTCAGGCTGAAAGGGCTGCTGCTGCTGCTGCCCGAAATGTTAATGCTTATGGTCAGAAGGAAGAAGGACCCAGCAGATGGCAGGAGAAAAGGGAAGCCAAGAGACAGATGTATTTGATGAGTACTGAAAAGGCAGTGAGACTGGGTGAAAGGAAAGACCTGAAGGCTAATGTATCTACTGTTGGTAGTGCAGCTTCACAATGCCAGAAGTGTTTCCAGCCTGGGCATTGGACATATGAATGTAAGAATGAACGTGTATACATCTCAAGGCCCTCTAGGACTCAGCAACTCAAAAATCCTAAACTGAAGATGAAGGTGTCACTATCCTACGATCTGGATGGTCCAGATCCAGATACTAAAAAGGAAGAGAAGAGTGAAAAGCTGTCGAAGAAAAGCAAGAGGAAACATAGGCGAGGTTCTGATTCTGACAGTGATAGTGAAGCTTCAGTTTTTGAGACTGATAGTGGGGAATCATCAGTTACAGGTTCTGATTATTCTTCTGAAGGGAGTAGTTCGGACTACAGTTCATCATCTGATTCCGAGGAGGAGAGAAGGCGCCGGAGGAAGAAGAAGAAGCAAAAGACAAGACGTAAAAGATACTCCTCATCATCTGAATCTTCTGATTCAGAATCAGCTTCTGAATCTGATTCTGATGAAAGGAGAAGCCGGAAGAAGAGCAAGAGGCACAGCAGAAAGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC_3

Protein Analysis

262

Amino Acids

29.59

Weight (kDa)

9.9

Isoelectric Point (pI)

77.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_3 PF13917 93 - 129 1.5e-22 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 642
AccB7I CCANNNNNTGG 1 cut(s) 165
AccI GTMKAC 1 cut(s) 345
AclWI GGATC 2 cut(s) 53, 428
AcuI CTGAAG 4 cut(s) 269, 413, 516, 609
AcyI GRCGYC 1 cut(s) 643
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 165
AflIII ACRYGT 1 cut(s) 340
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 5 cut(s) 89, 281, 469, 530, 722
AluI AGCT 5 cut(s) 89, 281, 469, 530, 722
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 3 cut(s) 184, 220, 536
AlwI GGATC 2 cut(s) 53, 428
AlwNI CAGNNNCTG 2 cut(s) 575, 725
AoxI GGCC 2 cut(s) 57, 356
ApeKI GCWGC 9 cut(s) 32, 35, 68, 104, 107, 110, 113, 116, 278
Asp700I GAANNNNTTC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 645
AspS9I GGNCC 3 cut(s) 155, 357, 428
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 2 cut(s) 155, 428
BanI GGYRCC 1 cut(s) 642
BanII GRGCYC 1 cut(s) 91
BarI GAAGNNNNNNTAC 2 cut(s) 265, 297
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 9 cut(s) 19, 47, 55, 91, 94, 97, 100, 103, 290
BccI CCATC 2 cut(s) 159, 419
BciT130I CCWGG 1 cut(s) 309
BcoDI GTCTC 3 cut(s) 184, 220, 536
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 2 cut(s) 33, 607
BfoI RGCGCY 1 cut(s) 646
BisI GCNGC 9 cut(s) 33, 36, 69, 105, 108, 111, 114, 117, 279
BlsI GCNGC 9 cut(s) 34, 37, 70, 106, 109, 112, 115, 118, 280
BmcAI AGTACT 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 2 cut(s) 155, 428
BmgT120I GGNCC 3 cut(s) 155, 357, 428
BmiI GGNNCC 2 cut(s) 157, 644
BmrFI CCNGG 1 cut(s) 309
BmrI ACTGGG 1 cut(s) 239
BmuI ACTGGG 1 cut(s) 239
Bpu10I CCTNAGC 3 cut(s) 27, 54, 90
BpuEI CTTGAG 2 cut(s) 82, 337
BsaHI GRCGYC 1 cut(s) 643
BsaJI CCNNGG 2 cut(s) 308, 627
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 308, 627
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMII CTCAG 4 cut(s) 41, 68, 104, 383
BseNI ACTGG 1 cut(s) 234
BseRI GAGGAG 3 cut(s) 644, 647, 679
BseXI GCAGC 9 cut(s) 19, 47, 55, 91, 94, 97, 100, 103, 290
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 2 cut(s) 59, 358
BshNI GGYRCC 1 cut(s) 642
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 2 cut(s) 646, 754
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 3 cut(s) 184, 220, 536
BsnI GGCC 2 cut(s) 59, 358
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 3 cut(s) 45, 418, 433
BspANI GGCC 2 cut(s) 59, 358
BspCNI CTCAG 4 cut(s) 40, 67, 103, 382
BspLI GGNNCC 2 cut(s) 157, 644
BspMAI CTGCAG 1 cut(s) 37
BspPI GGATC 2 cut(s) 53, 428
BspQI GCTCTTC 1 cut(s) 755
BspT107I GGYRCC 1 cut(s) 642
BsrI ACTGG 1 cut(s) 234
BssECI CCNNGG 2 cut(s) 308, 627
BssMI GATC 3 cut(s) 45, 418, 433
BssNAI GTATAC 1 cut(s) 346
BssNI GRCGYC 1 cut(s) 643
Bst1107I GTATAC 1 cut(s) 346
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 3 cut(s) 268, 518, 611
Bst6I CTCTTC 4 cut(s) 12, 447, 452, 755
BstACI GRCGYC 1 cut(s) 643
BstDEI CTNAG 5 cut(s) 27, 54, 80, 90, 369
BstF5I GGATG 1 cut(s) 430
BstH2I RGCGCY 1 cut(s) 646
BstHHI GCGC 1 cut(s) 645
BstKTI GATC 3 cut(s) 48, 421, 436
BstMAI GTCTC 3 cut(s) 184, 220, 536
BstMBI GATC 3 cut(s) 45, 418, 433
BstMWI GCNNNNNNNGC 6 cut(s) 32, 65, 101, 110, 113, 116
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 2 cut(s) 33, 607
BstV1I GCAGC 9 cut(s) 19, 47, 55, 91, 94, 97, 100, 103, 290
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BstZ17I GTATAC 1 cut(s) 346
BsuRI GGCC 2 cut(s) 59, 358
BtsCI GGATG 1 cut(s) 430
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 2 cut(s) 228, 523
CaiI CAGNNNCTG 2 cut(s) 575, 725
CfoI GCGC 1 cut(s) 645
Cfr13I GGNCC 3 cut(s) 155, 357, 428
Csp6I GTAC 1 cut(s) 210
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 5 cut(s) 27, 54, 80, 90, 369
DinI GGCGCC 1 cut(s) 644
DpnI GATC 3 cut(s) 47, 420, 435
DpnII GATC 3 cut(s) 45, 418, 433
Eam1104I CTCTTC 4 cut(s) 12, 447, 452, 755
EarI CTCTTC 4 cut(s) 12, 447, 452, 755
Ecl136II GAGCTC 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 155, 428
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 4 cut(s) 269, 413, 516, 609
EcoICRI GAGCTC 1 cut(s) 89
EcoO109I RGGNCCY 2 cut(s) 155, 357
EcoRII CCWGG 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 91
EgeI GGCGCC 1 cut(s) 644
EheI GGCGCC 1 cut(s) 644
FaiI YATR 5 cut(s) 138, 322, 324, 346, 495
FauNDI CATATG 1 cut(s) 322
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 9 cut(s) 33, 36, 69, 105, 108, 111, 114, 117, 279
FokI GGATG 1 cut(s) 437
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 9 cut(s) 33, 36, 69, 105, 108, 111, 114, 117, 279
FspBI CTAG 1 cut(s) 363
GlaI GCGC 1 cut(s) 644
GluI GCNGC 9 cut(s) 33, 36, 69, 105, 108, 111, 114, 117, 279
GsaI CCCAGC 1 cut(s) 162
HaeII RGCGCY 1 cut(s) 646
HaeIII GGCC 2 cut(s) 59, 358
HapII CCGG 2 cut(s) 646, 754
HhaI GCGC 1 cut(s) 645
Hin1I GRCGYC 1 cut(s) 643
Hin6I GCGC 1 cut(s) 643
HinP1I GCGC 1 cut(s) 643
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 9 cut(s) 367, 509, 557, 623, 701, 710, 716, 728, 734
HpaII CCGG 2 cut(s) 646, 754
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 346
Hpy188III TCNNGA 3 cut(s) 422, 431, 437
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 7 cut(s) 16, 139, 146, 244, 394, 584, 633
HpyCH4III ACNGT 3 cut(s) 268, 518, 611
HpyCH4IV ACGT 2 cut(s) 340, 676
HpyCH4V TGCA 2 cut(s) 35, 278
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 65, 101, 110, 113, 116
HpyF3I CTNAG 5 cut(s) 27, 54, 80, 90, 369
HpySE526I ACGT 2 cut(s) 340, 676
Hsp92I GRCGYC 1 cut(s) 643
HspAI GCGC 1 cut(s) 643
KasI GGCGCC 1 cut(s) 642
Kzo9I GATC 3 cut(s) 45, 418, 433
LguI GCTCTTC 1 cut(s) 755
Lsp1109I GCAGC 9 cut(s) 19, 47, 55, 91, 94, 97, 100, 103, 290
MaeI CTAG 1 cut(s) 363
MaeII ACGT 2 cut(s) 340, 676
MaeIII GTNAC 2 cut(s) 405, 565
MalI GATC 3 cut(s) 47, 420, 435
MboI GATC 3 cut(s) 45, 418, 433
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 91
Mly113I GGCGCC 1 cut(s) 643
MlyI GAGTC 1 cut(s) 361
MnlI CCTC 8 cut(s) 370, 480, 494, 622, 625, 642, 700, 762
MroXI GAANNNNTTC 1 cut(s) 299
MseI TTAA 2 cut(s) 129, 787
MslI CAYNNNNRTG 1 cut(s) 325
MspI CCGG 2 cut(s) 646, 754
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 6 cut(s) 32, 65, 101, 110, 113, 116
NarI GGCGCC 1 cut(s) 643
NdeI CATATG 1 cut(s) 322
NdeII GATC 3 cut(s) 45, 418, 433
NlaIV GGNNCC 2 cut(s) 157, 644
NmuCI GTSAC 1 cut(s) 405
PceI AGGCCT 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 755
PdmI GAANNNNTTC 1 cut(s) 299
PfeI GAWTC 8 cut(s) 509, 557, 623, 701, 710, 716, 728, 734
PflMI CCANNNNNTGG 1 cut(s) 165
PkrI GCNGC 9 cut(s) 34, 37, 70, 106, 109, 112, 115, 118, 280
PleI GAGTC 1 cut(s) 361
PluTI GGCGCC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 361
PpuMI RGGWCCY 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 2 cut(s) 157, 644
PspPI GGNCC 3 cut(s) 155, 357, 428
PspPPI RGGWCCY 1 cut(s) 155
PstI CTGCAG 1 cut(s) 37
PstNI CAGNNNCTG 2 cut(s) 575, 725
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 325
SacI GAGCTC 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 755
SaqAI TTAA 2 cut(s) 129, 787
SatI GCNGC 9 cut(s) 33, 36, 69, 105, 108, 111, 114, 117, 279
Sau3AI GATC 3 cut(s) 45, 418, 433
Sau96I GGNCC 3 cut(s) 155, 357, 428
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 91
SfcI CTRYAG 2 cut(s) 33, 607
SfoI GGCGCC 1 cut(s) 644
SinI GGWCC 2 cut(s) 155, 428
SmiMI CAYNNNNRTG 1 cut(s) 325
SmlI CTYRAG 2 cut(s) 61, 352
SmoI CTYRAG 2 cut(s) 61, 352
SseBI AGGCCT 1 cut(s) 59
SspDI GGCGCC 1 cut(s) 642
SspMI CTAG 1 cut(s) 363
SstI GAGCTC 1 cut(s) 91
StuI AGGCCT 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 3 cut(s) 268, 518, 611
TaiI ACGT 2 cut(s) 343, 679
TaqI TCGA 3 cut(s) 5, 85, 473
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 8 cut(s) 509, 557, 623, 701, 710, 716, 728, 734
Tru1I TTAA 2 cut(s) 129, 787
Tru9I TTAA 2 cut(s) 129, 787
TscAI CASTG 2 cut(s) 228, 523
TseFI GTSAC 1 cut(s) 405
TseI GCWGC 9 cut(s) 32, 35, 68, 104, 107, 110, 113, 116, 278
Tsp45I GTSAC 1 cut(s) 405
TspDTI ATGAA 5 cut(s) 339, 351, 413, 603, 756
TspRI CASTG 2 cut(s) 228, 523
Van91I CCANNNNNTGG 1 cut(s) 165
VpaK11BI GGWCC 2 cut(s) 155, 428
XmiI GTMKAC 1 cut(s) 345
XmnI GAANNNNTTC 1 cut(s) 299
XspI CTAG 1 cut(s) 363
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.