pycom13g13370

Zinc finger CCHC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0007741
Physical Location & Seq
Reverse (-)
9401282 .. 9402067
786 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g13370.1

Sequence Viewer

Length: 786 bp
ATGTCGAGTAAGAAAGAAGAGAAAGCTCAAGCTGCGGCTGAAAGGATCAAGGCAGCAGCCTTGAGTGCTGCGAAAGGTCTTAGTCGAGCTCAGGCTGAAAGGGCAGCTGCTGCAGCTGCTCGGAATGTTAATGCTTATGGGCAGAAGGAAGAAGGACCCAGCAGATGGCAGGAGAAAAGGGAAGCCAAGAGACAGATGTATTTGATGAGTACTGAAAAAGCTGTGAGATTGGGTGAACGGAAAGACCTAAAATCAAATGTATCTACCGTTGGTGGTGCAGCTTCACAATGCCAGAAGTGTTACCAACCTGGGCATTGGACATATGAATGCAAGAATGAACGTGTTTACATCTCGAGACCGTCTAGGACCCAGCAACTCAAAAATCCTAAACTGAAGATGAAGGTTGAAATATCATATGATTTGGACAATCCAGAAATTAAGGAAGAGAAGGAAGAAAAGCAGTCACAGAAAATCAAGAGAAAGCATCGCTCAGCCTCTGATTCTGGAAGTGATAGCGAGGCATCAGTTTTCGAGACTGATAGTGGTGCATCATCAGTTACTGGATCTGAATATTCTTCGGAGGAGAGTAGCTCAGATTACAGCTCATCTACTGACTCAGAGGAGGAGAGGAGGCACCGAAGGAAGAAGAAGAAGCAAAAGATGGCAAGGCGTAGAAGAAGGTACAGCTCATCATCTGAATCAACTGATTCTGAGTCAGCTTCCGAATCTGATTCCGATGATAGGAGGAGCCGGAAGAAGAGCACGAGGCACAGCAGAAAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC_3

Protein Analysis

262

Amino Acids

29.55

Weight (kDa)

9.75

Isoelectric Point (pI)

84.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_3 PF13917 93 - 129 1.2e-21 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 633
AccB7I CCANNNNNTGG 1 cut(s) 165
AciI CCGC 1 cut(s) 35
AclWI GGATC 2 cut(s) 53, 571
AcuI CTGAAG 1 cut(s) 413
AfaI GTAC 2 cut(s) 211, 683
AfiI CCNNNNNNNGG 2 cut(s) 165, 741
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 1 cut(s) 407
AjnI CCWGG 1 cut(s) 307
Alw21I GWGCWC 2 cut(s) 91, 764
Alw26I GTCTC 3 cut(s) 184, 349, 527
AlwI GGATC 2 cut(s) 53, 571
AlwNI CAGNNNCTG 3 cut(s) 110, 497, 560
Ama87I CYCGRG 1 cut(s) 352
AspS9I GGNCC 2 cut(s) 155, 366
AsuHPI GGTGA 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 352
AvaII GGWCC 2 cut(s) 155, 366
BanI GGYRCC 1 cut(s) 633
BanII GRGCYC 1 cut(s) 91
BauI CACGAG 1 cut(s) 763
Bbv12I GWGCWC 2 cut(s) 91, 764
BccI CCATC 2 cut(s) 159, 655
BciT130I CCWGG 1 cut(s) 309
BcoDI GTCTC 3 cut(s) 184, 349, 527
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 111
BlpI GCTNAGC 1 cut(s) 490
BmcAI AGTACT 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 2 cut(s) 155, 366
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 155, 366
BmiI GGNNCC 4 cut(s) 157, 368, 635, 749
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 3 cut(s) 493, 530, 557
BplI GAGNNNNNCTC 2 cut(s) 575, 607
Bpu10I CCTNAGC 1 cut(s) 90
Bpu1102I GCTNAGC 1 cut(s) 490
BpuEI CTTGAG 2 cut(s) 12, 82
BsaI GGTCTC 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 741
Bse1I ACTGG 1 cut(s) 565
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 308
BseLI CCNNNNNNNGG 2 cut(s) 165, 741
BseMII CTCAG 5 cut(s) 104, 504, 606, 630, 702
BseNI ACTGG 1 cut(s) 565
BseRI GAGGAG 5 cut(s) 596, 635, 638, 643, 760
BseYI CCCAGC 2 cut(s) 158, 369
BsgI GTGCAG 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 633
BsiHKAI GWGCWC 2 cut(s) 91, 764
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 1 cut(s) 751
BslI CCNNNNNNNGG 2 cut(s) 165, 741
BsmAI GTCTC 3 cut(s) 184, 349, 527
BsmI GAATGC 1 cut(s) 332
Bso31I GGTCTC 1 cut(s) 349
BsoBI CYCGRG 1 cut(s) 352
Bsp1286I GDGCHC 2 cut(s) 91, 764
Bsp143I GATC 2 cut(s) 45, 563
Bsp1720I GCTNAGC 1 cut(s) 490
BspACI CCGC 1 cut(s) 35
BspCNI CTCAG 5 cut(s) 103, 503, 605, 629, 703
BspLI GGNNCC 4 cut(s) 157, 368, 635, 749
BspMAI CTGCAG 1 cut(s) 115
BspPI GGATC 2 cut(s) 53, 571
BspQI GCTCTTC 1 cut(s) 752
BspT107I GGYRCC 1 cut(s) 633
BspTNI GGTCTC 1 cut(s) 349
BsrI ACTGG 1 cut(s) 565
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 2 cut(s) 45, 563
BssSI CACGAG 1 cut(s) 763
Bst2BI CACGAG 1 cut(s) 763
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 2 cut(s) 268, 360
Bst6I CTCTTC 3 cut(s) 12, 438, 752
BstAPI GCANNNNNTGC 1 cut(s) 110
BstDEI CTNAG 6 cut(s) 80, 90, 490, 592, 616, 711
BstKTI GATC 2 cut(s) 48, 566
BstMAI GTCTC 3 cut(s) 184, 349, 527
BstMBI GATC 2 cut(s) 45, 563
BstMWI GCNNNNNNNGC 6 cut(s) 32, 65, 101, 110, 113, 116
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 563
BstYI RGATCY 1 cut(s) 563
BtgZI GCGATG 1 cut(s) 470
CaiI CAGNNNCTG 3 cut(s) 110, 497, 560
Cfr13I GGNCC 2 cut(s) 155, 366
Csp6I GTAC 2 cut(s) 210, 682
CviQI GTAC 2 cut(s) 210, 682
DdeI CTNAG 6 cut(s) 80, 90, 490, 592, 616, 711
DpnI GATC 2 cut(s) 47, 565
DpnII GATC 2 cut(s) 45, 563
Eam1104I CTCTTC 3 cut(s) 12, 438, 752
EarI CTCTTC 3 cut(s) 12, 438, 752
Ecl136II GAGCTC 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 91
Eco31I GGTCTC 1 cut(s) 349
Eco47I GGWCC 2 cut(s) 155, 366
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 413
Eco88I CYCGRG 1 cut(s) 352
EcoICRI GAGCTC 1 cut(s) 89
EcoO109I RGGNCCY 2 cut(s) 155, 366
EcoRII CCWGG 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 91
FaiI YATR 5 cut(s) 138, 322, 324, 415, 417
FauNDI CATATG 2 cut(s) 322, 415
FriOI GRGCYC 1 cut(s) 91
FspBI CTAG 1 cut(s) 363
GsaI CCCAGC 2 cut(s) 162, 373
HapII CCGG 1 cut(s) 751
HinfI GANTC 7 cut(s) 500, 614, 698, 707, 713, 725, 731
HpaII CCGG 1 cut(s) 751
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 236, 346
Hpy188III TCNNGA 6 cut(s) 352, 354, 431, 475, 504, 532
Hpy8I GTNNAC 2 cut(s) 236, 346
HpyAV CCTTC 6 cut(s) 139, 146, 394, 442, 633, 672
HpyCH4III ACNGT 2 cut(s) 268, 360
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 4 cut(s) 113, 278, 330, 548
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 65, 101, 110, 113, 116
HpyF3I CTNAG 6 cut(s) 80, 90, 490, 592, 616, 711
HpySE526I ACGT 1 cut(s) 340
Kzo9I GATC 2 cut(s) 45, 563
LguI GCTCTTC 1 cut(s) 752
LmnI GCTCC 1 cut(s) 747
LweI GCATC 3 cut(s) 493, 530, 557
MaeI CTAG 1 cut(s) 363
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 3 cut(s) 299, 462, 556
MalI GATC 2 cut(s) 47, 565
MboI GATC 2 cut(s) 45, 563
MflI RGATCY 1 cut(s) 563
MhlI GDGCHC 2 cut(s) 91, 764
MluCI AATT 1 cut(s) 435
MlyI GAGTC 2 cut(s) 608, 722
MnlI CCTC 9 cut(s) 505, 511, 574, 613, 616, 621, 624, 738, 759
MseI TTAA 3 cut(s) 129, 438, 784
MslI CAYNNNNRTG 1 cut(s) 325
MspA1I CMGCKG 2 cut(s) 107, 116
MspI CCGG 1 cut(s) 751
MspR9I CCNGG 1 cut(s) 309
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 6 cut(s) 32, 65, 101, 110, 113, 116
NdeI CATATG 2 cut(s) 322, 415
NdeII GATC 2 cut(s) 45, 563
NlaIV GGNNCC 4 cut(s) 157, 368, 635, 749
NmuCI GTSAC 1 cut(s) 462
PaeR7I CTCGAG 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 752
PctI GAATGC 1 cut(s) 332
PfeI GAWTC 5 cut(s) 500, 698, 707, 725, 731
PflMI CCANNNNNTGG 1 cut(s) 165
PleI GAGTC 2 cut(s) 608, 721
PpsI GAGTC 2 cut(s) 608, 721
PpuMI RGGWCCY 2 cut(s) 155, 366
Psp124BI GAGCTC 1 cut(s) 91
Psp5II RGGWCCY 2 cut(s) 155, 366
Psp6I CCWGG 1 cut(s) 307
PspFI CCCAGC 2 cut(s) 158, 369
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 4 cut(s) 157, 368, 635, 749
PspPI GGNCC 2 cut(s) 155, 366
PspPPI RGGWCCY 2 cut(s) 155, 366
PstI CTGCAG 1 cut(s) 115
PstNI CAGNNNCTG 3 cut(s) 110, 497, 560
PsuI RGATCY 1 cut(s) 563
PvuII CAGCTG 2 cut(s) 107, 116
RsaI GTAC 2 cut(s) 211, 683
RsaNI GTAC 2 cut(s) 210, 682
RseI CAYNNNNRTG 1 cut(s) 325
SacI GAGCTC 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 752
SaqAI TTAA 3 cut(s) 129, 438, 784
Sau3AI GATC 2 cut(s) 45, 563
Sau96I GGNCC 2 cut(s) 155, 366
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 2 cut(s) 608, 722
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 2 cut(s) 91, 764
SfaNI GCATC 3 cut(s) 493, 530, 557
SfcI CTRYAG 1 cut(s) 111
Sfr274I CTCGAG 1 cut(s) 352
SinI GGWCC 2 cut(s) 155, 366
SlaI CTCGAG 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 325
SmlI CTYRAG 3 cut(s) 27, 61, 352
SmoI CTYRAG 3 cut(s) 27, 61, 352
Sse9I AATT 1 cut(s) 435
SsiI CCGC 1 cut(s) 35
SspI AATATT 1 cut(s) 572
SspMI CTAG 1 cut(s) 363
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 2 cut(s) 268, 360
TaiI ACGT 1 cut(s) 343
TaqI TCGA 4 cut(s) 5, 85, 353, 531
TasI AATT 1 cut(s) 435
TatI WGTACW 1 cut(s) 209
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 5 cut(s) 500, 698, 707, 725, 731
Tru1I TTAA 3 cut(s) 129, 438, 784
Tru9I TTAA 3 cut(s) 129, 438, 784
TseFI GTSAC 1 cut(s) 462
Tsp45I GTSAC 1 cut(s) 462
TspDTI ATGAA 3 cut(s) 339, 351, 413
TspGWI ACGGA 1 cut(s) 253
Van91I CCANNNNNTGG 1 cut(s) 165
VpaK11BI GGWCC 2 cut(s) 155, 366
XhoI CTCGAG 1 cut(s) 352
XspI CTAG 1 cut(s) 363
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.