MD16G1157200.v1.1

Zinc finger CCHC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0007741
Physical Location & Seq
Reverse (-)
12580277 .. 12582471
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1157200.v1.1.491

Sequence Viewer

Length: 786 bp
ATGTCGAGTAAGAAAGAAGAGAAAGCTCAAGCTGCAGCGGAGAGGATCAAGGCTGCAGCCATGAGTGCTGCAAAAGGTCTTAGTCGAGCTCAGGCTGAAAGGGCGGCTGCTGCAGCTGCTCGGAATGTTAATGCTTATGGGCAGAAGGAAGAAGGACCCAGCAGATGGCAGGAGAAAAGGGAAGCCAAGAGACAGATGTATTTGATGAGTACTGAAAAGGCTGTGAGATTGGGTGAACGGAAAGACCTCAAGTCAAATGTATCTACTGTTGGTGGTGCAGCTTCACAATGCCAGAAGTGTTACCAACCTGGGCATTGGACATATGAATGCAAGAATGAACGTGTTTACATCTCGCGACCGTCTAGGACCCAGCAACTCAAAAATCCTAAACTGAAGATGAAGGTTGAAATATCGTATGATTTGGACGGTCCAGAAATCAAGGAAGAGAAGAGTGAAAAGCAGCCAAAAATAAGCAAGAGGAAGCATCGGTCAGCTTCTGATTCTGGCAGCGATAGCGAGGCTTCAGTTTTTGAGACTGATAGTGGGGCATCATCAGTTACTGGATCTGACTCTTCTTCGGAGGAGAGTAGTTCAGATTACAGTTCATCTTCTGACTCAGAGGGGGACAGGAGGCGCCAAAGGAAGAAAAAGAAGCAAAAGATGGCAAGGCGTAGAAGAAGGTACAGCTCATCATCTGAATCTTCTGATTCTGAGTCAGTTTCCGAATCTGATTCTGATGATAGGAGGAGCCGGAAGAAGAGCAAGAGGCACAGCAGAAAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC_3

Protein Analysis

262

Amino Acids

29.28

Weight (kDa)

9.88

Isoelectric Point (pI)

85.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_3 PF13917 93 - 129 1.2e-21 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 633
AccB7I CCANNNNNTGG 1 cut(s) 165
AccII CGCG 1 cut(s) 355
AciI CCGC 2 cut(s) 38, 104
AclWI GGATC 2 cut(s) 53, 571
AcuI CTGAAG 2 cut(s) 413, 507
AcyI GRCGYC 1 cut(s) 634
AfaI GTAC 2 cut(s) 211, 683
AfiI CCNNNNNNNGG 1 cut(s) 165
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 1 cut(s) 407
AhdI GACNNNNNGTC 1 cut(s) 250
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 7 cut(s) 26, 32, 89, 116, 281, 494, 687
AluI AGCT 7 cut(s) 26, 32, 89, 116, 281, 494, 687
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 2 cut(s) 184, 527
AlwI GGATC 2 cut(s) 53, 571
AlwNI CAGNNNCTG 2 cut(s) 497, 560
AspLEI GCGC 1 cut(s) 636
AspS9I GGNCC 3 cut(s) 155, 366, 428
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 3 cut(s) 155, 366, 428
BanI GGYRCC 1 cut(s) 633
BanII GRGCYC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 91
BccI CCATC 2 cut(s) 159, 655
BciT130I CCWGG 1 cut(s) 309
BcoDI GTCTC 2 cut(s) 184, 527
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 3 cut(s) 33, 54, 111
BfoI RGCGCY 1 cut(s) 637
BmcAI AGTACT 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 3 cut(s) 155, 366, 428
BmeRI GACNNNNNGTC 1 cut(s) 250
BmgT120I GGNCC 3 cut(s) 155, 366, 428
BmiI GGNNCC 4 cut(s) 157, 368, 635, 749
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 2 cut(s) 493, 557
Bpu10I CCTNAGC 1 cut(s) 90
BpuEI CTTGAG 2 cut(s) 12, 233
BsaHI GRCGYC 1 cut(s) 634
BsaJI CCNNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 565
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 308
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMII CTCAG 3 cut(s) 104, 630, 702
BseNI ACTGG 1 cut(s) 565
BseRI GAGGAG 2 cut(s) 596, 760
BseYI CCCAGC 2 cut(s) 158, 369
BsgI GTGCAG 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 355
Bsh1285I CGRYCG 1 cut(s) 359
BshNI GGYRCC 1 cut(s) 633
BsiEI CGRYCG 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 751
BslFI GGGAC 1 cut(s) 638
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 2 cut(s) 184, 527
BsmFI GGGAC 1 cut(s) 638
BsmI GAATGC 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 2 cut(s) 45, 563
Bsp68I TCGCGA 1 cut(s) 355
BspACI CCGC 2 cut(s) 38, 104
BspCNI CTCAG 3 cut(s) 103, 629, 703
BspFNI CGCG 1 cut(s) 355
BspLI GGNNCC 4 cut(s) 157, 368, 635, 749
BspMAI CTGCAG 3 cut(s) 37, 58, 115
BspPI GGATC 2 cut(s) 53, 571
BspQI GCTCTTC 1 cut(s) 752
BspT107I GGYRCC 1 cut(s) 633
BsrI ACTGG 1 cut(s) 565
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 2 cut(s) 45, 563
BssNI GRCGYC 1 cut(s) 634
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 4 cut(s) 268, 360, 428, 602
Bst6I CTCTTC 5 cut(s) 12, 438, 443, 577, 752
BstACI GRCGYC 1 cut(s) 634
BstDEI CTNAG 4 cut(s) 80, 90, 616, 711
BstFNI CGCG 1 cut(s) 355
BstH2I RGCGCY 1 cut(s) 637
BstHHI GCGC 1 cut(s) 636
BstKTI GATC 2 cut(s) 48, 566
BstMAI GTCTC 2 cut(s) 184, 527
BstMBI GATC 2 cut(s) 45, 563
BstMCI CGRYCG 1 cut(s) 359
BstMWI GCNNNNNNNGC 7 cut(s) 32, 65, 101, 110, 113, 116, 513
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 3 cut(s) 33, 54, 111
BstUI CGCG 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 563
BstYI RGATCY 1 cut(s) 563
BtuMI TCGCGA 1 cut(s) 355
CaiI CAGNNNCTG 2 cut(s) 497, 560
CfoI GCGC 1 cut(s) 636
Cfr13I GGNCC 3 cut(s) 155, 366, 428
Csp6I GTAC 2 cut(s) 210, 682
CviAII CATG 1 cut(s) 61
CviQI GTAC 2 cut(s) 210, 682
DdeI CTNAG 4 cut(s) 80, 90, 616, 711
DinI GGCGCC 1 cut(s) 635
DpnI GATC 2 cut(s) 47, 565
DpnII GATC 2 cut(s) 45, 563
DriI GACNNNNNGTC 1 cut(s) 250
Eam1104I CTCTTC 5 cut(s) 12, 438, 443, 577, 752
Eam1105I GACNNNNNGTC 1 cut(s) 250
EarI CTCTTC 5 cut(s) 12, 438, 443, 577, 752
Ecl136II GAGCTC 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 3 cut(s) 155, 366, 428
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 2 cut(s) 413, 507
EcoICRI GAGCTC 1 cut(s) 89
EcoO109I RGGNCCY 2 cut(s) 155, 366
EcoRII CCWGG 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 91
EgeI GGCGCC 1 cut(s) 635
EheI GGCGCC 1 cut(s) 635
FaeI CATG 1 cut(s) 64
FaiI YATR 5 cut(s) 62, 138, 322, 324, 417
FaqI GGGAC 1 cut(s) 638
FatI CATG 1 cut(s) 60
FauNDI CATATG 1 cut(s) 322
FriOI GRGCYC 1 cut(s) 91
FspBI CTAG 1 cut(s) 363
GlaI GCGC 1 cut(s) 635
GsaI CCCAGC 2 cut(s) 162, 373
HaeII RGCGCY 1 cut(s) 637
HapII CCGG 1 cut(s) 751
HhaI GCGC 1 cut(s) 636
Hin1I GRCGYC 1 cut(s) 634
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 634
HinP1I GCGC 1 cut(s) 634
HinfI GANTC 8 cut(s) 500, 569, 614, 698, 707, 713, 725, 731
HpaII CCGG 1 cut(s) 751
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 236, 346
Hpy188III TCNNGA 2 cut(s) 354, 431
Hpy8I GTNNAC 2 cut(s) 236, 346
HpyAV CCTTC 4 cut(s) 139, 146, 394, 672
HpyCH4III ACNGT 4 cut(s) 268, 360, 428, 602
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 6 cut(s) 35, 56, 71, 113, 278, 330
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 65, 101, 110, 113, 116, 513
HpyF3I CTNAG 4 cut(s) 80, 90, 616, 711
HpySE526I ACGT 1 cut(s) 340
Hsp92I GRCGYC 1 cut(s) 634
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 634
KasI GGCGCC 1 cut(s) 633
Kzo9I GATC 2 cut(s) 45, 563
LguI GCTCTTC 1 cut(s) 752
LmnI GCTCC 1 cut(s) 747
LweI GCATC 2 cut(s) 493, 557
MaeI CTAG 1 cut(s) 363
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 2 cut(s) 299, 556
MalI GATC 2 cut(s) 47, 565
MboI GATC 2 cut(s) 45, 563
MflI RGATCY 1 cut(s) 563
MhlI GDGCHC 1 cut(s) 91
Mly113I GGCGCC 1 cut(s) 634
MlyI GAGTC 3 cut(s) 563, 608, 722
MnlI CCTC 9 cut(s) 36, 257, 471, 511, 574, 613, 624, 738, 759
MseI TTAA 2 cut(s) 129, 784
MslI CAYNNNNRTG 1 cut(s) 325
MspA1I CMGCKG 2 cut(s) 38, 116
MspI CCGG 1 cut(s) 751
MspR9I CCNGG 1 cut(s) 309
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 1 cut(s) 309
MvnI CGCG 1 cut(s) 355
MwoI GCNNNNNNNGC 7 cut(s) 32, 65, 101, 110, 113, 116, 513
NarI GGCGCC 1 cut(s) 634
NdeI CATATG 1 cut(s) 322
NdeII GATC 2 cut(s) 45, 563
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 4 cut(s) 157, 368, 635, 749
NruI TCGCGA 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 752
PctI GAATGC 1 cut(s) 332
PfeI GAWTC 5 cut(s) 500, 698, 707, 725, 731
PflMI CCANNNNNTGG 1 cut(s) 165
PleI GAGTC 3 cut(s) 563, 608, 721
PluTI GGCGCC 1 cut(s) 637
PpsI GAGTC 3 cut(s) 563, 608, 721
PpuMI RGGWCCY 2 cut(s) 155, 366
Psp124BI GAGCTC 1 cut(s) 91
Psp5II RGGWCCY 2 cut(s) 155, 366
Psp6I CCWGG 1 cut(s) 307
PspFI CCCAGC 2 cut(s) 158, 369
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 4 cut(s) 157, 368, 635, 749
PspPI GGNCC 3 cut(s) 155, 366, 428
PspPPI RGGWCCY 2 cut(s) 155, 366
PstI CTGCAG 3 cut(s) 37, 58, 115
PstNI CAGNNNCTG 2 cut(s) 497, 560
PsuI RGATCY 1 cut(s) 563
PvuII CAGCTG 1 cut(s) 116
RruI TCGCGA 1 cut(s) 355
RsaI GTAC 2 cut(s) 211, 683
RsaNI GTAC 2 cut(s) 210, 682
RseI CAYNNNNRTG 1 cut(s) 325
SacI GAGCTC 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 752
SaqAI TTAA 2 cut(s) 129, 784
Sau3AI GATC 2 cut(s) 45, 563
Sau96I GGNCC 3 cut(s) 155, 366, 428
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 3 cut(s) 563, 608, 722
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 91
SfaNI GCATC 2 cut(s) 493, 557
SfcI CTRYAG 3 cut(s) 33, 54, 111
SfoI GGCGCC 1 cut(s) 635
SinI GGWCC 3 cut(s) 155, 366, 428
SmiMI CAYNNNNRTG 1 cut(s) 325
SmlI CTYRAG 2 cut(s) 27, 248
SmoI CTYRAG 2 cut(s) 27, 248
SsiI CCGC 2 cut(s) 38, 104
SspDI GGCGCC 1 cut(s) 633
SspMI CTAG 1 cut(s) 363
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 4 cut(s) 268, 360, 428, 602
TaiI ACGT 1 cut(s) 343
TaqI TCGA 2 cut(s) 5, 85
TaqII GACCGA 1 cut(s) 477
TatI WGTACW 1 cut(s) 209
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 5 cut(s) 500, 698, 707, 725, 731
Tru1I TTAA 2 cut(s) 129, 784
Tru9I TTAA 2 cut(s) 129, 784
TspDTI ATGAA 4 cut(s) 339, 351, 413, 594
TspGWI ACGGA 1 cut(s) 253
Van91I CCANNNNNTGG 1 cut(s) 165
VpaK11BI GGWCC 3 cut(s) 155, 366, 428
XspI CTAG 1 cut(s) 363
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.