Rroxscaffold_2G00147270

Zinc finger CCHC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007741
Physical Location & Seq
Reverse (-)
85168777 .. 85169410
634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00147270.1

Sequence Viewer

Length: 513 bp
ATGTCGAGTAAGAAAGAAGAGAAGGCTCAGACTGCAGTAGAAAGGATCAAGGCTCAGGCCTTGAGTGCTGCAAAAGGTCTTAGTCGAGCTCAGGCTGAAAGGGCTGCTGCTGCTGCCCGAAATGTTAATGCTTATGGGCAGAAGGAAGAAGGACACAGCAGATGGCAGGAGAAAAGGGAAGCCAAGAGACAGATGTATTTGATGAGTACTGAAAAGGCAGTGAGACTGGGCGAAAGGAAAGATCTGAAGGCTAATGTATCTACTGTTGGTAGTACAGTTTCACAATGCCAGAAGTGTTTCCAACCTGGGCATTGGACGTACGAATATCCAGATACTAAAAAAGAAGAGAATAGTGAAAAGCAATCAAAGAAAAGCGAGAGGAAATATAGGCGAGGTTCTGATTCTGGCAGTGATAGTGAAGCTTCAGTTTTTTATTCTTCTGAAGGGAGTAGTCCAGATTACAGTTCATCATCTGATCCTGTGGAGGAGAGAAGGCGCCGAAGGAAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCHC_3

Protein Analysis

170

Amino Acids

19.22

Weight (kDa)

9.67

Isoelectric Point (pI)

72.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 495
AclWI GGATC 2 cut(s) 53, 470
AcuI CTGAAG 3 cut(s) 266, 408, 462
AcyI GRCGYC 1 cut(s) 496
AfaI GTAC 3 cut(s) 208, 274, 320
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 2 cut(s) 89, 422
AluI AGCT 2 cut(s) 89, 422
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 2 cut(s) 181, 217
AlwI GGATC 2 cut(s) 53, 470
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 5 cut(s) 68, 104, 107, 110, 113
Asp700I GAANNNNTTC 1 cut(s) 296
AspLEI GCGC 1 cut(s) 498
BanI GGYRCC 1 cut(s) 495
BanII GRGCYC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 5 cut(s) 55, 91, 94, 97, 100
BccI CCATC 1 cut(s) 156
BciT130I CCWGG 1 cut(s) 306
BcoDI GTCTC 2 cut(s) 181, 217
BfmI CTRYAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 499
BglII AGATCT 1 cut(s) 241
BisI GCNGC 5 cut(s) 69, 105, 108, 111, 114
BlsI GCNGC 5 cut(s) 70, 106, 109, 112, 115
BmcAI AGTACT 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 306
BmiI GGNNCC 1 cut(s) 497
BmrFI CCNGG 1 cut(s) 306
BmrI ACTGGG 1 cut(s) 236
BmuI ACTGGG 1 cut(s) 236
Bpu10I CCTNAGC 2 cut(s) 54, 90
BpuEI CTTGAG 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 496
BsaJI CCNNGG 1 cut(s) 305
Bse1I ACTGG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 305
BseMII CTCAG 3 cut(s) 41, 68, 104
BseNI ACTGG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 5 cut(s) 55, 91, 94, 97, 100
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 495
BsiHKAI GWGCWC 1 cut(s) 91
BsiWI CGTACG 1 cut(s) 318
BsmAI GTCTC 2 cut(s) 181, 217
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 3 cut(s) 45, 241, 475
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 3 cut(s) 40, 67, 103
BspLI GGNNCC 1 cut(s) 497
BspMAI CTGCAG 1 cut(s) 37
BspPI GGATC 2 cut(s) 53, 470
BspT107I GGYRCC 1 cut(s) 495
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 3 cut(s) 45, 241, 475
BssNI GRCGYC 1 cut(s) 496
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 3 cut(s) 265, 277, 464
Bst6I CTCTTC 2 cut(s) 12, 339
BstACI GRCGYC 1 cut(s) 496
BstDEI CTNAG 4 cut(s) 27, 54, 80, 90
BstH2I RGCGCY 1 cut(s) 499
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 3 cut(s) 48, 244, 478
BstMAI GTCTC 2 cut(s) 181, 217
BstMBI GATC 3 cut(s) 45, 241, 475
BstMWI GCNNNNNNNGC 5 cut(s) 32, 65, 101, 110, 113
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 5 cut(s) 55, 91, 94, 97, 100
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 1 cut(s) 59
BtsI GCAGTG 2 cut(s) 225, 415
BtsIMutI CAGTG 2 cut(s) 225, 415
CfoI GCGC 1 cut(s) 498
Csp6I GTAC 3 cut(s) 207, 273, 319
CviJI RGCY 9 cut(s) 26, 53, 59, 89, 95, 104, 182, 251, 422
CviKI_1 RGCY 9 cut(s) 26, 53, 59, 89, 95, 104, 182, 251, 422
CviQI GTAC 3 cut(s) 207, 273, 319
DdeI CTNAG 4 cut(s) 27, 54, 80, 90
DinI GGCGCC 1 cut(s) 497
DpnI GATC 3 cut(s) 47, 243, 477
DpnII GATC 3 cut(s) 45, 241, 475
Eam1104I CTCTTC 2 cut(s) 12, 339
EarI CTCTTC 2 cut(s) 12, 339
Ecl136II GAGCTC 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 3 cut(s) 266, 408, 462
EcoICRI GAGCTC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 91
EgeI GGCGCC 1 cut(s) 497
EheI GGCGCC 1 cut(s) 497
FaiI YATR 2 cut(s) 135, 387
Fnu4HI GCNGC 5 cut(s) 69, 105, 108, 111, 114
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 5 cut(s) 69, 105, 108, 111, 114
GlaI GCGC 1 cut(s) 497
GluI GCNGC 5 cut(s) 69, 105, 108, 111, 114
HaeII RGCGCY 1 cut(s) 499
HaeIII GGCC 1 cut(s) 59
HhaI GCGC 1 cut(s) 498
Hin1I GRCGYC 1 cut(s) 496
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 1 cut(s) 401
Hpy188I TCNGA 5 cut(s) 30, 246, 400, 442, 475
Hpy188III TCNNGA 2 cut(s) 329, 455
HpyAV CCTTC 7 cut(s) 16, 136, 143, 241, 437, 486, 495
HpyCH4III ACNGT 3 cut(s) 265, 277, 464
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 2 cut(s) 35, 71
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 65, 101, 110, 113
HpyF3I CTNAG 4 cut(s) 27, 54, 80, 90
HpySE526I ACGT 1 cut(s) 317
Hsp92I GRCGYC 1 cut(s) 496
HspAI GCGC 1 cut(s) 496
KasI GGCGCC 1 cut(s) 495
Kzo9I GATC 3 cut(s) 45, 241, 475
Lsp1109I GCAGC 5 cut(s) 55, 91, 94, 97, 100
MaeII ACGT 1 cut(s) 317
MalI GATC 3 cut(s) 47, 243, 477
MboI GATC 3 cut(s) 45, 241, 475
MboII GAAGA 4 cut(s) 29, 158, 356, 429
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 1 cut(s) 508
Mly113I GGCGCC 1 cut(s) 496
MmeI TCCRAC 1 cut(s) 325
MnlI CCTC 3 cut(s) 372, 386, 478
MroXI GAANNNNTTC 1 cut(s) 296
MseI TTAA 2 cut(s) 126, 511
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 5 cut(s) 32, 65, 101, 110, 113
NarI GGCGCC 1 cut(s) 496
NdeII GATC 3 cut(s) 45, 241, 475
NlaIV GGNNCC 1 cut(s) 497
PceI AGGCCT 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 401
Pfl23II CGTACG 1 cut(s) 318
PkrI GCNGC 5 cut(s) 70, 106, 109, 112, 115
PluTI GGCGCC 1 cut(s) 499
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspLI CGTACG 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 497
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 3 cut(s) 208, 274, 320
RsaNI GTAC 3 cut(s) 207, 273, 319
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 126, 511
SatI GCNGC 5 cut(s) 69, 105, 108, 111, 114
Sau3AI GATC 3 cut(s) 45, 241, 475
ScaI AGTACT 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 1 cut(s) 91
SetI ASST 6 cut(s) 79, 91, 307, 320, 397, 424
SfcI CTRYAG 1 cut(s) 33
SfoI GGCGCC 1 cut(s) 497
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 1 cut(s) 508
SseBI AGGCCT 1 cut(s) 59
SspDI GGCGCC 1 cut(s) 495
SstI GAGCTC 1 cut(s) 91
StuI AGGCCT 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 304
TaaI ACNGT 3 cut(s) 265, 277, 464
TaiI ACGT 1 cut(s) 320
TaqI TCGA 2 cut(s) 5, 85
TasI AATT 1 cut(s) 508
TatI WGTACW 2 cut(s) 206, 272
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 2 cut(s) 126, 511
Tru9I TTAA 2 cut(s) 126, 511
TscAI CASTG 2 cut(s) 225, 415
TseI GCWGC 5 cut(s) 68, 104, 107, 110, 113
TspDTI ATGAA 1 cut(s) 456
TspRI CASTG 2 cut(s) 225, 415
XmnI GAANNNNTTC 1 cut(s) 296
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.